2003 Bight03 Coastal Ecology Trawl Fish Abundance
Metadata:
- Identification_Information:
-
- Citation:
-
- Citation_Information:
-
- Originator:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Publication_Date: 20040402
- Publication_Time: 20040402
- Title: 2003 Bight03 Coastal Ecology Trawl Fish Abundance
- Edition: 1.0
- Publication_Information:
-
- Publication_Place: Costa Mesa, California
- Publisher:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Online_Linkage:
-
View a Map of this Data [html]
-
Download this Data as an Excel Friendly File [csv]
-
Download this Data with Associated Data Files [zip]
- Online_Linkage: [ENTER MAP LINK HERE]
- Online_Linkage: [ENTER EXCEL LINK HERE]
- Online_Linkage: [ENTER DOWNLOAD LINK HERE]
- Larger_Work_Citation:
-
- Citation_Information:
-
- Originator:
-
Southern California Coastal Water Reserach Project
(SCCWRP)
- Originator:
-
Southern California Coastal Water Reserach Project
(SCCWRP)
- Publication_Date: 20030301
- Title: Demersal Fishes and Megabenthic Invertebrates
- Edition: 1.0
- Publication_Information:
-
- Publication_Place: Costa Mesa, California
- Publisher:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Other_Citation_Details:
-
The proper citation for this report is: Allen, M.
J., T. Mikel, D. Cadien, J. E. Kalman, E. T.
Jarvis, K. C. Schiff, D. W. Diehl, S. L. Moore, S.
Walther, G. Deets, C. Cash, S. Watts, D. J.
Pondella II, V. Raco-Rands, C. Thomas, R. Gartman,
L. Sabin, W. Power, A. K. Groce, and J. L.
Armstrong. 2007. Southern California Bight 2003
Regional Monitoring Program: IV. Demersal Fishes
and Megabenthic Invertebrates. Southern California
Coastal Water Research Project. Costa Mesa, CA.
- Online_Linkage: Add linkage to the report
- Description:
-
- Abstract:
-
The Southern California Bight , an open embayment
in the coast between Point Conception and Cape
Colnett (south of Ensenada), Baja California, is
an important and unique ecological resource. The
SCB is a transitional area that is influenced by
currents from cold, temperate ocean waters from
the north and warm, tropical waters from the
south. In addition, the SCB has a complex
topography, with offshore islands, submarine
canyons, ridges and basins, which provide a
variety of habitats. The mixing of currents and
the diverse habitats in the SCB allow for the
coexistence of a broad spectrum of species,
including more than 500 species of fish and
several thousand species of invertebrates. The
SCB is also a major migration route, with marine
bird and mammal populations ranking among the most
diverse in north temperate waters. The coastal
zone of the SCB is a substantial economic
resource. Los Angeles/Long Beach Harbor is the
largest commercial port in the United States, and
San Diego Harbor is home to one of the largest US
Naval facilities in the country. More than 100
million people visit southern California beaches
and coastal areas annually, bringing an estimated
$9B into the economy. Recreational activities
include diving, swimming, surfing, and boating,
with about 40,000 pleasure boats docked in 13
coastal marinas within the region (NRC 1990).
Recreational fishing brings in more than $500M per
year. The SCB is one of the most densely
populated coastal regions in the country, which
creates stress upon its marine environment.
Nearly 20 million people inhabit coastal Southern
California, a number that is expected to increase
another 20% by 2010 (NRC 1990). Population growth
generally results in conversion of open land into
non-permeable surfaces. More than 75% of southern
Californian bays and estuaries have already been
dredged and filled for conversion into harbors and
marinas (Horn and Allen 1985). This “hardening of
the coast” increases the rate of runoff and can
impact water quality through addition of sediment,
toxic chemicals, pathogens and nutrients to the
ocean. Besides the impacts of land conversion,
the SCB is already home to fifteen municipal
wastewater treatment facilities, eight power
generating stations, 10 industrial treatment
facilities, and 18 oil platforms that discharge to
the open coast. Each year, local, state, and
federal agencies spend in excess of $31M to
monitor the environmental quality of natural
resources in the SCB (Schiff et al 2001). At
least 75% of this monitoring is associated with
National Pollutant Discharge Elimination System
(NPDES) permits and is intended to assess
compliance of waste discharge with the California
Ocean Plan and the federal Clean Water Act, which
set water quality standards for effluent and
receiving waters. Some of this information has
played a significant role in management decisions
in the SCB. While these monitoring programs have
provided important information, they were designed
to evaluate impacts near individual discharges.
Today, resource managers are being encouraged to
develop management strategies for the entire SCB.
To accomplish this task, they need
regionally-based information to assess cumulative
impacts of contaminant inputs and to evaluate
relative risk among different types of stresses.
It is difficult to use existing data to evaluate
regional issues because the monitoring was
designed to be site-specific and is limited to
specific geographic areas. The monitoring
provides substantial data for some areas, but
there is little or no data for the areas in
between. Beyond the spatial limitations, data
from these programs are not easily merged to
examine relative risk. The parameters measured
often differ among programs. Even when the same
parameters are measured, the methodologies used to
collect the data often differ and interlaboratory
quality assurance (QA) exercises to assess data
comparability are rare. Previous Regional
Monitoring Studies To begin addressing these
concerns, there have been two previous regional
monitoring efforts. The first regional monitoring
survey in 1994, called the Southern California
Bight Pilot Project (SCBPP), was a compilation of
12 agencies that cooperatively sampled 261 sites
along the continental shelf between Point
Conception and the United States/Mexico border.
The second regional monitoring survey, called the
Southern California Bight 1998 Regional Monitoring
Project (Bight’98), was comprised of 64 agencies
that cooperatively sampled 416 sites between Point
Conception and Punta Banda, Mexico. In both
surveys, assessments were made of water quality,
sediment contamination, the status of biological
resources and species diversity, and the presence
of marine debris in depths of 10 to 200m, with
some special emphasis in areas of anthropogenic
inputs such as large publicly owned treatment
works (POTWs) or large river and creek mouths.
However, Bight’98 extended what was done in 1994
by adding additional habitats such as offshore
islands and inshore areas like bays/harbors, as
well as additional areas of anthropogenic inputs
such as marinas, ports, and small POTWs.
Moreover, a regional evaluation of shoreline water
quality was added in 1998 that provided our first
evaluation of the swimmability of southern
California beaches during dry and wet weather.
Benefits derived from both the SCBPP and Bight’98
also included the development of new useful
technical tools that could only be developed with
regional data sets and participation by multiple
organizations. For example, the project produced
iron-normalization curves for the SCB, allowing
distinction between natural and anthropogenic
contributions of metals in sediments (Schiff and
Weisberg 1998). A Benthic Response Index was
developed that integrates complex benthic infaunal
data into an easily interpreted form that
describes the degree of perturbation at a site
(Bergen et al. 1998). Newer, cheaper
microbiological methods were tested and evaluated
alongside traditional microbial measurement
methods and now have been accepted by both the
state health agencies for routine shoreline
monitoring (ref). Bight’98 also improved the
comparability among the major laboratories in the
SCB as a result of the quality assurance and
quality control (QA/QC) laboratory
intercalibration exercises for chemistry and
microbiology. The project also produced a series
of manuals containing standardized field,
laboratory and data management activities that
increased continuity of data and data reporting
among participants, even after the regional
monitoring surveys were completed. 2003 Survey
The proposed Southern California Bight 2003
Regional Monitoring Project (Bight’03) is a
continuation of the successful cooperative
regional-scale monitoring begun in southern
California during the 1990’s. Bight’03 builds
upon the previous successes and expands on the
1998 survey by including new participants,
sampling more habitats, and measuring more
parameters or using new methods. [Number]
organizations, including international and
volunteer organizations, have agreed to
participate (Table I-1). The inclusion of
multiple participants, many of them new to
regional monitoring, provides several benefits.
Cooperative interactions among many organizations
with different perspectives and interests,
including a combination of regulators and
dischargers, ensures that an appropriate set of
regional-scale questions will be addressed by the
study. The additional resources brought by
numerous participants also expands the number of
habitats and indicators that will be sampled.
Sampling for Bight’03 will include all of the
areas sampled in 1998, plus a new focus on
nearshore habitats (coastal lagoons) and offshore
habitats (inner continental slopes and basins).
Several new technologies will be brought to bear
in Bight’03 including remote sensing from
satellite, aerial, and land-based platforms, new
microbial genetic and phenotypic source tracking
techniques, and radiodating of sediments to
determine age and accumulation of chemicals in
sediments.
- Purpose:
-
The overall goal of the coastal ecology component
of Bight’03 is to assess the condition of the
bottom environment and the health of the
biological resources in the SCB. To accomplish
this goal, Bight’03 will focus on two primary
objectives: 1.Estimate the extent and
magnitude of ecological change in the SCB,
2.Determine the mass balance of pollutants that
currently reside within the SCB. The first
objective, estimating the amount of area (i.e.,
number of acres) in the SCB that ecological
conditions differ from reference conditions, is a
departure from traditional approaches to
environmental monitoring, which generally focus on
estimating average condition. Estimating the
areal extent of ecological change offers several
advantages. First, it provides a more direct
assessment of status. For instance, identifying
that the average concentration of dissolved oxygen
in the Bight is 6.7 ppm provides less useful
information for environmental managers than does
identifying what percentage of the area in the
Bight fails to meet water quality standards. A
second advantage of estimating areal extent
concerns trend detection. If conditions in the
Bight change over time such that some areas
improve and others worsen, the average condition
might not change. By estimating the areal extent
of alteration, we will be better able to describe
these changes. There are two subobjectives within
the areal extent and magnitude objective. The
first subobjective is to determine if the areal
extent and magnitude vary among geographic
regions. If we answer this question, then managers
can determine if specific areas are in worse
condition than others, such as areas near
anthropogenic inputs versus those areas distant
from inputs. Therefore, Bight’03 will compare
condition among 11 geographic areas of interest
(Table II-1). These subpopulations of our study
area were selected to represent a range of natural
and potentially affected habitats, and include all
of the habitats sampled in 1998. There are three
new habitats to be sampled in Bight’03. The first
two are located offshore of previously sampled
habitats; the upper continental slope (200-500m)
and the lower slope and inner basin (500-1000m).
The break in deep water strata is a reflection of
an ecotone between upper slope and lower slope
biological communities. The third habitat is
inshore of previous sampled habitats and includes
coastal lagoons. Comparison of the relative
condition among strata not only provides
information about the geographic distribution of
impacts, it also allows comparison of relative
risk from a variety of point and non-point source
discharges. Comparison of conditions may be
conducted by comparing the extent of area
exceeding a threshold of concern or by comparison
of mean condition. The second subobjective within
the areal extent and magnitude objective is
assessing the relationship between biological
responses and contaminant exposure. Such
associations provide the information necessary for
risk assessment, and for developing efficient
regional strategies for protecting the environment
by identifying the predominant types of stress in
the SCB ecosystem. Therefore, this subobjective
will be accomplished by simultaneously collecting
numerous measures of biological response,
contaminant exposure and habitat condition (Table
II-2) to better identify when exposure has reached
a level of concern. Measuring multiple indicators
also permits us to identify the most likely type
of exposure leading to biological response. The
second primary objective will create a mass
balance of contaminants in the SCB. This
objective recognizes that local monitoring
programs only address a portion of what is
discharged to the SCB and that contaminant inputs
to the SCB are cumulative both among sources and
over time. Ultimately, both environmental
managers and the public want to know what fraction
of the contaminants that are discharged remain in
the SCB and what fraction leaves the SCB.
Therefore, Bight’03 will create an inventory of
contaminants that reside in the SCB in sediment,
water column, and biological compartments. The
total mass of contaminants in these compartments
will be compared to estimates of mass discharged
from land based activities. Understanding how
much mass is in the SCB will require some new
measurements including measurements of not just
sediment chemistry, but estimates of accumulation
rates in sediments, as well as new measurements in
the water column.
- Supplemental_Information:
-
This metadata is based on the collected data. the
Bight '03 Trawl Report is based on a modified
database as created by the trawl Committee.
Contact Dr. M. James Allen with any questions
regarding thenTrawl report of modify data.The full
text of the Field Methods Document may be obtained
from
http://www.sccwrp.org/regional/03bight/03docs.html
Demersal fish and megabenthic invertebrate
assemblages: Demersal fish and megabenthic
invertebrates are more mobile than the benthic
infauna, but are still closely associated with the
bottom and chronically exposed to sediment
contaminants. Demersal fish and megabenthic
invertebrates will be collected with a semiballoon
otter trawl with 7.6-m headrope length and a 1.3
cm cod-end mesh. Trawls will be towed for 10 min
at 0.8-1.0 m/s along depth isobaths (5 min in
harbors). All fish and most invertebrates will be
identified to species, counted, and weighed.
Gross fish pathology: The presence and extent of
external diseases (e.g. fin rot and tumors) and
anomalies (e.g. skeletal deformities or abnormal
coloration) will be recorded from fish collected
in the trawls for assemblage analysis. Xpecimens
with unusual or unidentified conditions will be
returned to the laboratory for detailed
examination.
- Time_Period_of_Content:
-
- Time_Period_Information:
-
- Range_of_Dates/Times:
-
- Beginning_Date: 20030717
- Ending_Date: 20040903
- Currentness_Reference: ground condition
- Status:
-
- Progress: COMPLETE
- Maintenance_and_Update_Frequency: As Needed
- Spatial_Domain:
-
- Description_of_Geographic_Extent: Southern California Bight
- Bounding_Coordinates:
-
- West_Bounding_Coordinate: -120.458
- East_Bounding_Coordinate: -117.11635
- North_Bounding_Coordinate: 34.46549
- South_Bounding_Coordinate: 32.54554
- Keywords:
-
- Theme:
-
- Theme_Keyword_Thesaurus: None
- Theme_Keyword: Southern California Bight
- Place:
-
- Place_Keyword_Thesaurus: None
- Place_Keyword: Sourthern California Bight
- Place_Keyword: California
- Access_Constraints: None
- Use_Constraints: Dataset credit required
- Point_of_Contact:
-
- Contact_Information:
-
- Contact_Person_Primary:
-
- Contact_Person: Information Systems Manager
- Contact_Organization:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Contact_Position: Information Manager
- Contact_Address:
-
- Address_Type: physical address
- Address: 3535 Harbor Blvd. Suite 110
- City: Costa Mesa
- State_or_Province: California
- Postal_Code: 92626
- Country: USA
- Contact_Voice_Telephone: 714.755.3200
- Contact_Facsimile_Telephone: 714.755.3299
- Contact_Electronic_Mail_Address: im_contact@sccwrp.org
- Hours_of_Service: 8:00 a.m. to 4:00 p.m. Monday Through Friday
- Contact_Instructions: email preferred
- Data_Set_Credit: Bight03 Participants
- Native_Data_Set_Environment: Microsoft Access Version 2000
- Data_Quality_Information:
-
- Attribute_Accuracy:
-
- Attribute_Accuracy_Report: Coordinates accurate to within 100 ft
- Logical_Consistency_Report:
-
The tables may be related by the StationID field
or the SampleID field where applicable.
- Completeness_Report:
-
The following stations were abandoned: StationID
FailureReason Comments 4010 Obstructions Station
is under a marina, we couldn't get within 420 m of
the site. 4016 Comment Required Permission not
granted by Camp Pendleton to trawl in harbor
because of underwater cables 4018 Obstructions
Cannot get within 100 m of site it is located
under the docks in Alamitos Bay 4020 Comment
Required Depth along trawl track >10% 4022 Rocky
Bottom Too rocky to trawl 4023 Rocky Bottom Three
fathometer runs each showed rocky bottom. 4024 No
Failure site was abandoned because near canyon.
The boat bathymetery was up and down. 4044
Obstructions Inside sub base, Can't access 4052
Obstructions Station located on land in Marina.
Can sample benthics within 100 m, however, marina
channel is to narrow to safely trawl. 4059 Torn
Net Torn net due to obstructions on ocean floor.
4067 Torn Net Torn net due to obstructions on
ocean floor. 4069 Kelp Bed Due to kelp beds cannot
approach within 100m of coords 4076 Obstructions
Station within San Diego Yacht Club Marina. Too
narrow to trawl 4084 Obstructions Ships, piers in
navy site, no clear track, moving station 100m,
still no room for trawl 4089 Rocky Bottom Too
rocky to trawl 4093 Not within 10% of Target Site
Depth 10% depth rule could not be met 4103 Rocky
Bottom Three fathometer runs each showed rocky
bottom. 4108 Obstructions Next to Broadway pier.
Not enough room to trawl. No clear trawl track.
Depth near station varies by more than 10% 4111
Rocky Bottom Three fathometer runs each showed
rocky bottom. 4126 No Failure Abandon site due to
coral reef. 4139 Obstructions Site located on the
inside of the south Ventura Harbor jetty.Both
grabs and trawls unsafe due to boat traffic and
public recreation. 4140 Obstructions In the middle
of the Bay Club Hotel Marina 4146 Irregular Bottom
depth differential greater than 10% and hump in
trawl line. 4147 Obstructions Net torn; board
broken on first trawl 4167 Obstructions Doors,
lotek, & net lost due to obstructions on ocean
floor. 4169 Fouled Net Net and boards lost,
snagged on rocks. 4175 Kelp Bed Kelp Bed, heavy
oil slick 4178 Obstructions Station on Beach could
not get within 1.4 km of target 4185 Comment
Required crab traps as cause of failures 4192 No
Failure site is on series of reefs with heavy
kelp. 4195 Rocky Bottom Three fathometer runs each
showed rocky bottom. 4226 Obstructions Hard
bottom, Structure off edge of oil Island- Station
too close to oil Island 4247 Rocky Bottom Reef in
all locations. Past experience with lost trawl
nets on same tracks. Total of 6 grabs attempted
with no luck. 4251 Torn Net Torn net due to
obstructions on ocean floor. 4266 Obstructions
Obstructions/obstacles on trawl route bottom 4278
Rocky Bottom Net snagged on bottom and ripped in
half 4292 Kelp Bed Kelp bed w/in 1/2 mi. radius
around site. Depth 21 m 4297 Fouled Net Floats
crushed. Abandon station. 4301 Comment Required
High relief and crab traps 4332 Obstructions
Station is right in the midst of wreck alley near
an old navy tower. Lg. tower-like obstruction seen
in mulit. Approaches to the station. 4358 Rocky
Bottom Too rocky to trawl 4375 Comment Required 1
hour spent attempting grabs with no luck. Reef
throughout area. No good trawl tracks found. Nets
lost in area on previous surveys. 4378 Rocky
Bottom Unable to locate trawlable track free of
rocky outcropping. 4379 Rocky Bottom Three
fathometer runs each showed rocky bottom. 4382
Comment Required Based on investigation of site
during benthic sampling, it was determined that
site is outside depth limit of stratum. Unable to
locate trawl track within 100 m of target
coordinates and within 10% of the 500 m stratum
depth limit. 4386 Obstructions Station is
proximate to the dock, could get to within 90 m
but with SW wind and boat traffic was unsafe. The
captain made the decision that it was not safe to
trawl this site. 4388 Rocky Bottom Rocky bottom
4424 Obstructions On beach- couldn't get within
240 m of target, also vessel was directly offshore
of Alamitos Bay fuel dock. 4425 Rocky Bottom Three
fathometer runs each showed rocky bottom. 4442
Comment Required Station depth during a 1.3 m tide
is 2.1 m. Unable to find a 3.0 m depth within 100
m of station. Also, station is located 50 m into a
No Powerboat Zone. 4510 No Failure " bottom was
full of metal debris which ripped up the net."
4512 Rocky Bottom Too rocky to trawl 4575 Rocky
Bottom Snagged and tore net 1ft diameter rocks in
net
- Lineage:
-
- Methodology:
-
- Methodology_Type: Field
- Methodology_Description:
-
Identification The goal is to provide
Xpecies-level identifications for all fish and
invertebrates captured in the trawl. Most, if not
all, of the trawl-caught organisms should be
identifiable to Xpecies in the field using the
recommended taxonomic keys and field guides.
Xpecies of fish and invertebrates that cannot be
reliably identified to Xpecies in the field should
be returned to the laboratory for further
identification. In these instances, it is better
that the field crew recognize their taxonomic
limitations, record "FID" (further identification)
on the field sheet and include descriptions of any
attributes that may later aid in the
identification of that xpecimen. Under no
circumstances should an organism be discarded if
the identity is in question. When the FID
organisms have finally been identified, the
correct identity of the Xpecies should be recorded
on the original data sheet. If the laboratory
identity differs from that recorded in the field,
the original name should be crossed out with a
single line only; do not erase the original name.
If a xpecimen cannot be identified by the sampling
organization, it will be sent to SCCWRP for
further analysis. Although all fish collected
during Bight’03 will be identified to the lowest
possible taxon (either in the field or in the
laboratory), only certain trawl-caught
invertebrates meeting very specific criteria will
need to be identified to that level. There are
likely to be many small infaunal and pelagic
Xpecies that will be taken incidental to the trawl
catch. These need not be processed or
documented. Only epibenthic invertebrate
organisms greater than 1 cm in any dimension will
be included in the data. Colonial and pelagic
organisms will be noted, but do not need to be
enumerated. The presence of obvious fish
parasites, such as leeches or cymothoid isopods,
should be noted. A recommended list of field
guides and taxonomic aids for identifying fish and
invertebrates will be distributed to all of the
participating organizations prior to the survey.
The most basic and comprehensive guides for fish
are Miller and Lea (1972) and Eschmeyer et al.
(1983). Allen (1977) provides information for
identifying juvenile rockfishes (Sebastes spp.),
while Orr et al. (2000) and Love et al. (2002)
provide keys to larger rockfishes. Kramer et al.
(1995) provides information for identifying
flatfishes. Generally, there are no widely
comprehensive guides to the epibenthic
invertebrates. Either common or scientific
names of fish may be used in the field, however,
in the case of invertebrates, only scientific
names are permissible. Use standard common and
scientific names of fishes and scientific names of
invertebrates given in a list of trawl-caught
Xpecies of fishes and invertebrates in southern
California that have been distributed to
organizations prior to the survey. For Xpecies
not in these lists, use only standard common and
scientific names of fishes given in Robins et al.
(1991), or scientific names of fishes from
Eschmeyer (1998), and common names of
invertebrates from SCAMIT (2001). For every
Xpecies caught, each organization will provide at
least one representative of that Xpecies to the
Bight'03 voucher collection (see Voucher
Collection) Each organization should have a kit
containing a variety of tools which will aid in
field identification. The kit should include
forceps (small with sharp points and large with
blunt points), a hand lens, dividers or calipers,
dissecting needles, scalpels with scalpel blades,
probes, and plastic rulers (marked in
millimeters). Length Measurement All fish
Xpecies will either be measured on measuring
boards or, for very large xpecimens, by a meter
stick or tape measure. A measuring board
typically consists of either a flat or trough
shaped board with a part of a meter stick running
down the middle. A smaller board (cross board) is
attached across the zero-end of the meter stick.
Centimeter size-xlasses are marked along the side
of the measuring board with the number of the size
xlass marked next to the appropriate centimeter.
When measuring a fish, the head should be pushed
against the cross board at the zero-end of the
measuring board. Standard length in bony fishes
is obtained by measuring from the anterior tip of
the head to the posterior end of the caudal
peduncle, located slightly anterior of the
externally visible origin of the caudal fin rays.
Bending the tail laterally upwards and noting the
point of sharp flexure can most closely
approximate where standard length is measured
(Figure 7). Total length will be measured for all
cartilaginous fishes. Wingspan will be measured
in addition to total length for stingrays because
the tips of their tails are frequently broken off
(Figure 8). The length of all fish xpecimens
will be reported in size xlasses of 1 cm intervals
(Mearns and Allen 1978). The first centimeter
size xlass (size xlass number 1) extends from >0
to 1.0 cm; size xlass 2 extends from >1.0 to 2.0
cm, and so forth (Figure 9). All Xpecies will be
recorded on the Trawl Fish Xpecies Data Sheet, or
Trawl Invertebrate Xpecies Data Sheet (Appendix
6). For fish Xpecies with 10 or fewer
individuals, each size xlass measurement will be
recorded on the Trawl Fish Xpecies Data Sheet,
separated by commas. For Xpecies with more than
10 individuals, the Xpecies identifications and
totals are listed on the data sheet, but the
individual sizes are tallied on a separate Fish
Size-Xlass Data Sheet (Appendix 6). An attempt
should be made to size-xlass all fish. For the
rare occasions when size xlassing is not possible
(e.g., a huge catch of a single Xpecies), a
subsample of several hundred fish should be
measured. When this occurs, the reason should be
noted on the data sheet. (Note: Catches of
greater than 2,300 individuals of a single Xpecies
have been measured in past surveys). FIGURE 7.
Endpoints for Standard Length (SL) and Total
Length (TL) for bony fish. FIGURE 8.
Endpoints for Wingspan (WS), Standard Length (SL),
and Total Length for measuring the length of
bony and cartilaginous fishes.
FIGURE 9.
Relationship of centimeter size xlasses to
millimeter values using centimeter and
millimeter marks on a meter stick where size xlass
20 is defined as 19.1 to 20.0 mm. Weighing
Weight data collected from fish and invertebrate
Xpecies will be used to estimate the total biomass
of the catch and for each Xpecies where practical.
Each organization should have a range of spring
scales that are capable of weighing to the nearest
0.1 kg. The scales should be calibrated at the
start of each trawling day using a standard set of
at least three weights. Weighing will be done
using a pre-weighed tare bucket, or another
suitable container (e.g., plastic net bags). If a
tare bucket is used, the bottom should have many
holes drilled through it to allow any excess
liquid to drain off before the weight is recorded.
Tare buckets should be washed periodically to
remove the accumulated slime. The total biomass
of each Xpecies will be measured with a spring
scale. Xpecies with a biomass greater than 0.1 kg
will be recorded to the nearest 0.1 kg. The tare
container weight will be subtracted from the gross
weight (Xpecies plus tare container) to give the
weight of the Xpecies (net weight). Tare and
gross weight can be recorded on the data sheet but
are not required. Small Xpecies weighing less
than 0.1 kg will be recorded as <0.1 kg. These
will be set aside and weighed together to provide
a composite weight. Composite weights greater
than 0.1 kg will be recorded to the nearest 0.1
kg. Composite weights of less than 0.1 kg will
not be rounded; they are to be recorded as <0.1
kg. There will be one composite weight for fish
and one composite weight for invertebrates. These
weights will assist in calculating the total
biomass of the catch. Large organisms may be
weighed individually. Individual weights of
smaller xpecimens may also be collected using a
range of scales capable of weighing to the nearest
0.1 g. Enumeration Fish are enumerated while
measuring them. The total number of each Xpecies
(including size-xlassed Xpecies) should be
recorded on not only the Fish Xpecies Data Sheet,
but also the Fish Size-Xlass Data Sheets for
Xpecies represented by more than 10 individuals.
Most invertebrates will be enumerated following
identification. However, the number of
individuals in particularly abundant Xpecies may
be estimated from the total biomass of the Xpecies
at a later time. First, the number of individuals
that comprise a minimal weight can be used to
provide a "number of individuals per kilogram"
coefficient. The total biomass of a Xpecies
divided by the number of individuals per kilogram
yields the total number of individuals in the
sample. The aliquot of xpecimens that will be
used to determine weight for a Xpecies should be
sufficiently large (e.g., several kilograms) so
that it falls within the mid to upper range of the
spring scale being used; this prevents the
inherent inaccuracy of the spring scale at the low
end from being multiplied throughout the entire
biomass calculation. Examination for Gross
Pathology During the identification and
measurement procedures, fish and invertebrates
will be examined for gross pathology. This
entails a scan of an individual organism for
anomalies and noting the type of pathology (by
abbreviation) next to the length of organisms (for
fish) during measurement on the appropriate data
sheet. The following anomalies will be noted for
fish: 1) fin erosion 2) tail erosion 3)
tumors 4) external parasites (e.g., copepods,
isopods, leeches) 5) eye parasites (i.e.
Phrixocephalus) 6) color anomalies
(ambicoloration, albinism) (Mearns and Haaker
1973) 7) skeletal deformities (Valentine 1975) 8)
lesions 9) other anomalies An observation
should be noted next to the individual length on
the Fish Xpecies Data Sheet and described in the
comments section. For invertebrates, burnspots,
parasites, and other anomalies will be noted in
the comment section of the Trawl Invertebrate
Xpecies Sheet (Appendix 6). Fin erosion can be
found on the dorsal, anal, and caudal fins of
flatfishes, and on the lower caudal fin and pelvic
fins of bilaterally symmetrical fishes. Tail
erosion occurs on the top and bottom of the caudal
fin or along the entire posterior caudal fin of
bilaterally symmetrical fishes. Tumors can be
smooth and rounded (angioepithelial nodules) or
furrowed (epidermal papillomas). Externally
obvious copepod parasites occur on the eye, fins,
or body of fish. Cymothoid isopods occur in the
gill cavities of fish or on the body; they often
fall off. Leeches occur on the body of some
flatfishes. Skeletal deformities include crooked
backs, snub noses, or bent fin rays. Lesions
include sores that do not appear to be caused by
net damage. Burnspot disease is found on crabs
and some shrimps; its lesions resemble cigarette
burns. Parasites of invertebrates include bopyrid
isopod parasites of shrimp. Representatives of
fish and invertebrates exhibiting each new
instance of disease or which have a different
parasite should be returned to the laboratory and
vouchered. Processing Stage Monitoring
Accidental omissions can occasionally be made if a
bucket of organisms is not processed. This can be
avoided by attaching a colored rubber tag (made of
a square with a slit in one side) to the handle of
each bucket to indicate a particular stage of
processing. For instance, different tags can
represent that the bucket is ready for
identification, measurement, weighing,
preservation, or discarding. As the bucket
progresses to the next stage, the current tag can
be pulled off and a new tag can be added. This
procedure is not necessary for small catches but
may be helpful when catches are large. Tags with
commonly caught Xpecies names can also be
temporarily attached to buckets to facilitate
sorting and processing. Safe Handling of
Organisms Field personnel are likely to encounter
a variety of organisms that are potentially
harmful. California scorpionfish (Scorpaena
guttata) have venomous fin spines that can cause
severe pain. This Xpecies should be handled with
leather gloves and/or pliers. Hot water, meat
tenderizer or ammonia should be applied to any
puncture wound inflicted by this fish; heat is
useful in breaking down the protein in the venom.
Several Xpecies of rockfishes and the spotted
ratfish (Hydrolagus colliei) also have mildly
venomous spines which can cause a burning
sensation. The round sting ray (Urobatis
halleri), the California butterfly ray (Gymnura
marmorata), and the bat ray (Myliobatis
californica) all have venomous spines on their
tails. The Pacific electric ray (Torpedo
californica) can emit a very strong electric
shock. If you must handle this Xpecies, wear
rubber gloves and hold it by the tail. Do not
grasp the disk with both hands! Pacific angel
sharks (Squatina californica), spiny dogfish
(Squalus acanthias), spotted ratfish, Pacific
electric rays, and California halibut
(Paralichthys californicus) all have sharp teeth
that can result in painful bites if they are not
handled properly. Care must also be taken in
handling the blueleg mantis shrimp (Hemisquilla
ensigera). This Xpecies is capable of severely
cutting a person with its raptorial appendages.
Care should also be taken in handling any of the
large crabs and octopus. Preservation of
Xpecimens Voucher xpecimens, incompletely
identified fish and invertebrate xpecimens, and
those with diseases that require further
examination should be returned to the laboratory.
Fish and invertebrate xpecimens may be preserved
or documented for QC or identification purposes in
one of three ways: 1) fixing in buffered
formalin-seawater; 2) freezing; 3)
photographing. However, all such xpecimens
should be fixed in buffered formalin-seawater
unless they are absolutely too large for
preservation in this manner in the field. The
preferred method for preserving small xpecimens is
to fix them in 10% buffered formalin-seawater.
Xpecimens with fin erosion, tumors, or lesions
will be fixed in this manner. Buffered formalin
is made by mixing 50 g Na2B4O7 (sodium borate) per
liter of formaldehyde or 5 g per liter of 10%
formalin. The body cavities of fish greater than
60 mm in length should be slit with a scalpel on
the right (for most bilaterally symmetrical fish),
the blind side (for flatfish), or ventral side
(for dorsoventrally flattened fish, such as rays)
before the xpecimen is placed in formalin. The
slit allows preservative to enter the body cavity
and preserve the internal organs. Note that by
convention, bilaterally symmetrical fish are
photographed or drawn with their heads facing left
and dissections or gut cavity incisions are
conducted only on the right side of the fish.
Fish and invertebrates will be placed in plastic
bags or plastic jars and fixed in 10% buffered
formalin-seawater. Fish should be inserted
tail-first into jars so that they can be removed
easily without destroying the fin rays or spines.
Fish should remain in formalin for no more than
a week before being transferred to a freshwater
bath. It is recommended that fish xpecimens soak
in the water for at least two days. The water
should be changed at least once during that
period. The fish should then be transferred to a
solution of 50% isopropanol (isopropyl alcohol),
or 70% ethanol for preservation. Trawl-caught
invertebrates will also be fixed in 10% buffered
formalin-seawater and preserved in 70% ethanol.
Voucher xpecimens should not be submitted to
SCCWRP until they have been transferred to
alcohol. Larger xpecimens can be placed in
plastic bags and frozen on dry ice if excessively
large quantities of formalin would be required to
fix the xpecimen in the field. These can then be
thawed and fixed in the laboratory with a 10%
buffered formalin solution. If possible, large
xpecimens with tumors, fin erosion, or lesions
should be fixed in the field with formalin rather
than frozen. Do not freeze xpecimens that can
otherwise be preserved in the field in
formalin-seawater. Small invertebrates (e.g.,
nudibranchs) may be kept cold in seawater and
returned alive to the lab for identification.
Only large xpecimens of fish and invertebrates can
be vouchered in the field by photographing them in
color. If a photograph is used for a voucher of
a Xpecies, it should show the overall appearance
of the xpecimen, and all important identifying
features. If characters necessary for the
identification of a Xpecies cannot be seen in the
photograph, the photograph will not be accepted as
a voucher. Colorful fishes may also be
photographed in addition to providing a preserved
xpecimen to aid in identification of the voucher.
Photographs of unidentified rockfishes, in
particular, should be taken as soon as possible
after capture because their color, which is an
important taxonomic character, fades during
preservation. Bilaterally symmetrical fish and
dorsoventrally flattened fish (skates, rays)
should be photographed facing left. Flatfish
should be photographed with the eyed side up. The
left-eyed Xpecies should be photographed facing to
the left and the right-eyed Xpecies should face to
the right (Note: The gill cover should cut the
lower profile of the body). If an anomaly or
important character occurs on the opposite side of
the recommended profile for a particular type of
fish, a photo should also be taken of the
afflicted side. All xpecimens should be
photographed on a light background with a meter
stick along side and a label giving date, station
number, and Xpecies in large bold letters. Notes
should be made of character states that can aid in
identification (e.g., counts of fin rays, gill
rakers, and scales). Xpecimens preserved for
further identification must be noted on the field
data sheet. Note whether the organism is fixed,
frozen, or photographed. A photograph log should
be kept during the survey, documenting Xpecies
name, the frame number, the date and the station
location of each photograph.
- Process_Step:
-
- Process_Description: All data was processed through QA procedures.
- Process_Date: 20040903
- Spatial_Data_Organization_Information:
- Spatial_Reference_Information:
-
- Horizontal_Coordinate_System_Definition:
-
- Geographic:
-
- Latitude_Resolution: .0001
- Longitude_Resolution: .0001
- Geographic_Coordinate_Units: Decimal degrees
- Geodetic_Model:
-
- Horizontal_Datum_Name: North American Datum of 1983
- Ellipsoid_Name: Geodedic Reference System 80
- Semi-major_Axis: 6378137
- Denominator_of_Flattening_Ratio:
-
298.257
4.2.2.1 Depth Datum Name:
- Entity_and_Attribute_Information:
-
- Detailed_Description:
-
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: Abundance
- Attribute_Definition: The number of fish in the size class.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Range_Domain:
-
- Range_Domain_Minimum: 1
- Range_Domain_Maximum: 725
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: SampleDate
- Attribute_Definition:
-
The date the sample was taken expressed as
dd-mmm-yyyy.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Range_Domain:
-
- Range_Domain_Minimum: 20030717
- Range_Domain_Maximum: 20040903
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: SizeClass
- Attribute_Definition:
-
The size class into which the fish falls expressed
in cm.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Range_Domain:
-
- Range_Domain_Minimum: 1
- Range_Domain_Maximum: 105
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: SamplingOrganization
- Attribute_Definition: From luList01_AgencyCodes.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: luList01_AgencyCodes
- Enumerated_Domain_Value_Definition: A list of participating agencies
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: SampleID
- Attribute_Definition: The laboratory internal sample identifier.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Unrepresentable_Domain: Lab sampleID
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: BodyLocation
- Attribute_Definition: From luList29_FishBodyLocations.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: luList29_FishBodyLocations
- Enumerated_Domain_Value_Definition: Fish Body Locations
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: StationID
- Attribute_Definition:
-
A geographic location label from the station
table.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: tblStations
- Enumerated_Domain_Value_Definition: The official station list
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: AbundanceQualifier
- Attribute_Definition:
-
Any necessary qualifier from
luList11_QualifierCodes.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: luList11_QualifierCodes
- Enumerated_Domain_Value_Definition: Qualifier Codes
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: TrawlNumber
- Attribute_Definition:
-
The sequential number of the the trawl taken at
the station.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Range_Domain:
-
- Range_Domain_Minimum: 1
- Range_Domain_Maximum: 3
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: Anomaly
- Attribute_Definition:
-
Any present anomaly of combination of anomalies
from luList22_TrawlFishAnomalies.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: luList22_TrawlFishAnomalies
- Enumerated_Domain_Value_Definition: Trawl Fish Anomalies
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: Species
- Attribute_Definition:
-
The species being measured from
luList09_SpeciesList.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Enumerated_Domain:
-
- Enumerated_Domain_Value: luList09_SpeciesList
- Enumerated_Domain_Value_Definition: Species List
- Enumerated_Domain_Value_Definition_Source: Bight03 Information Management Plan
- Entity_Type:
-
- Entity_Type_Label: tblTrawlFishAbundance
- Entity_Type_Definition: TABLE
- Entity_Type_Definition_Source: Bight03 Information Management Plan
- Attribute:
-
- Attribute_Label: Comments
- Attribute_Definition: Additional remarks.
- Attribute_Definition_Source: Bight03 Information Management Plan
- Attribute_Domain_Values:
-
- Unrepresentable_Domain: Additional Remarks
- Distribution_Information:
-
- Distributor:
-
- Contact_Information:
-
- Contact_Person_Primary:
-
- Contact_Person: Information Systems Manager
- Contact_Organization:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Contact_Position: Information Manager
- Contact_Address:
-
- Address_Type: mailing address
- Address: 3535 Harbor Blvd. Suite 110
- City: Costa Mesa
- State_or_Province: California
- Postal_Code: 92626
- Country: USA
- Contact_Voice_Telephone: 714.755.3200
- Contact_Facsimile_Telephone: 714.438.1016
- Contact_Electronic_Mail_Address: im_contact@sccwrp.org
- Hours_of_Service: 8:00 a.m. to 4:00 p.m. Monday Through Friday
- Contact_Instructions: email preferred
- Distribution_Liability:
-
Although these data have been processed
successfully on a computer system at SCCWRP, no
warranty expressed or implied is made regarding
the accuracy or utility of the data on any other
system or for general or scientific purposes, nor
shall the act of distribution constitute any such
warranty. This disclaimer applies both to
individual use of the data and aggregate use with
other data. It is strongly recommended that these
data are directly acquired from a MLML server, and
not indirectly through other sources which may
have changed the data in some way. It is also
strongly recommended that careful attention be
paid to the contents of the metadata file
associated with these data. MLML shall not be
held liable for improper or incorrect use of the
data described and/or contained herein.
- Metadata_Reference_Information:
-
- Metadata_Date: 20040315
- Metadata_Contact:
-
- Contact_Information:
-
- Contact_Person_Primary:
-
- Contact_Person: Information Systems Manager
- Contact_Organization:
-
Southern California Coastal Water Research Project
(SCCWRP)
- Contact_Position: Information Manager
- Contact_Address:
-
- Address_Type: physical address
- Address: 3535 Harbor Blvd. Suite 110
- City: Costa Mesa
- State_or_Province: California
- Postal_Code: 92626
- Country: USA
- Contact_Voice_Telephone: 714.755.3200
- Contact_Facsimile_Telephone: 714.755.3299
- Contact_Electronic_Mail_Address: im_contact@sccwrp.org
- Hours_of_Service: 8:00 a.m. to 4:00 p.m. Monday Through Friday
- Contact_Instructions: email preferred
- Metadata_Standard_Name:
-
NBII Content Standard for National Biological
Information Infrastructure Metadata
- Metadata_Standard_Version: December 1985
- Metadata_Time_Convention: Local Time
- Metadata_Access_Constraints: None
- Metadata_Use_Constraints: None
- Metadata_Security_Information:
-
- Metadata_Security_Classification_System: None
- Metadata_Security_Classification: Unclassified
- Metadata_Security_Handling_Description: None
Generated by mp on Tue Mar 20 13:42:33 2007