All publications related to DNA Barcoding
PublicationPub. TypePub. YearSCCWRP Pub. #Related Topic Areas

Kelly, R.P., D.M. Lodge, K.N. Lee, S. Theroux, A.J. Sepulveda, C.A. Scholin, J.M. Craine, E.A. Allan, K.M. Nichols, K.M. Parsons, K.D. Goodwin, Z. Gold, F.P. Chavez, R.T. Noble, C.L. Abbott, M.R. Baerwald, A.M. Naaum, P.M. Thielen, A.L. Simons, C.L. Jerde, J.J. Duda, M.E. Hunter, J.A. Hagan, R.S. Meyer, J.A. Steele, M.Y. Stoeckle, H.M. Bik, C.P. Meyer, E.D. Stein, K.E. James, A.C. Thomas, E. Demir-Hilton, M.A. Timmers, J.F. Griffith, M.J. Weise, S.B. Weisberg. 2024. Toward a national eDNA strategy for the United States. Environmental DNA DOI:10.1002/edn3.432.

Journal Article20241336Bioassessment, DNA Barcoding

Stein, E.D., C.L. Jerde, E. Andruszkiewicz Allan, A.J. Sepulveda, C.L. Abbott, M.R. Baerwald, J. Darling, K.D. Goodwin, R.S. Meyer, M.A. Timmers, P.M. Thielen. 2024. Critical considerations for communicating environmental DNA science. Environmental DNA DOI:10.1002/edn3.472.

Journal Article20241339Bioassessment, DNA Barcoding

Simons, A.L., S. Theroux, M. Osborne, S. Nuzhdin, R.D. Mazor, J.A. Steele. 2023. Zeta diversity patterns in metabarcoded lotic algal assemblages as a tool for bioassessment. Ecological Applications DOI:10.1002/eap.2812.

Journal Article20231319Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Stepien, C.A., S. Theroux, S.B. Weisberg. 2022. The Second National Workshop on Marine eDNA: A workshop to accelerate the incorporation of eDNA science into environmental management application. Environmental DNA DOI:10.1002/edn3.379.

Journal Article20221300Bioassessment, DNA Barcoding

Charles, D.F., M.G. Kelly, R.J. Stevenson, S. Poikane, S. Theroux, A. Zgrundo, M. Cantonati. 2021. Benthic algae assessments in the EU and the US: Striving for consistency in the face of great ecological diversity . Ecological Indicators DOI:10.1016/j.ecolind.2020.107082.

Journal Article20211191Bioassessment, DNA Barcoding, Eutrophication, Indices Of Biotic Integrity

Theroux, S., R.D. Mazor, M.W. Beck, P.R. Ode, E.D. Stein, M. Sutula. 2020. Predictive biological indices for algae populations in diverse stream environments. Ecological Indicators DOI:10.1016/j.ecolind.2020.106421.

Journal Article20201135Bioassessment, DNA Barcoding, Eutrophication, Indices Of Biotic Integrity

Aylagas, E., A. Borja, X. Pochon, A. Zaiko, N. Keeley, K. Bruce, P. Hong, G.M. Ruiz, E.D. Stein, S. Theroux, N. Geraldi, A. Ortega, L. Gajdzik, D.J. Coker, Y. Katan, T. Hikmawan, A. Saleem, S. Alamer, B.H. Jones, C.M. Duarte, J. Pearman, S. Carvalho. 2020. Translational Molecular Ecology in practice: Linking DNA-based methods to actionable marine environmental management. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.140780.

Journal Article20201131Bioassessment, DNA Barcoding

Simons, A.L., R.D. Mazor, S. Theroux. 2019. Using Co‐occurrence Network Topology in Assessing Ecological Stress in Benthic Macroinvertebrate Communities. Ecology and Evolution DOI:10.1002/ece3.5751.

Journal Article20191099Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Mazor, R.D., M. Beck, J.S. Brown. 2018. 2017 Report on the Southern California Stormwater Monitoring Coalition Regional Stream Survey. Technical Report 1029. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181029Bioassessment, DNA Barcoding, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Kacev, D., D.J. Gillett, A.F. de Carvalho, C. Cash, S. Walther, C.D. Larsen, A. Thompson, L. Thompson, N. Bowlin, K. Goodwin, E.D. Stein. 2018. Assessment of Ichthyoplankton Metabarcoding for Routine Monitoring. Technical Report 1031. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181031Bioassessment, DNA Barcoding

Gibson, J.F., E.D. Stein, D.J. Baird, C.M. Finlayson, X. Zhang, M. Hajibabaei. 2015. Wetland Ecogenomics - The Next Generation of Wetland Biodiversity and Functional Assessment. Wetland Science and Practice 32:27-32.

Journal Article20150851Bioassessment, DNA Barcoding

White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2014. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment. Freshwater Science 33:338-348.

Journal Article20140808Bioassessment, DNA Barcoding

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, B.W. Sweeney. 2014. Does DNA barcoding improve performance of traditional stream bioassessment metrics?. Freshwater Science 33:302-311.

Journal Article20140803Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Jackson, J.K., J.M. Battle, B.P. White, E.M. Pilgrim, E.D. Stein, P.E. Miller, B.W. Sweeney. 2014. Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications. Freshwater Science 33:312-324.

Journal Article20140811Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Stein, E.D., M.C. Martinez, S. Stiles, P.E. Miller, E.V. Zakharov. 2014. Is DNA Barcoding Actually Cheaper and Faster than Traditional Morphological Methods? Results from a Survey of Freshwater Bioassessment Efforts in the United States. PLoS ONE 9:e95525.

Journal Article20140823Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Bourlat, S.J., A. Borja, J. Gilbert, M.I. Taylor, N. Davies, S.B. Weisberg, J.F. Griffith, T. Lettieri, D. Field, J. Benzie, F.O. Glockner, N. Rodriguez-Ezpeleta, D.P. Faith, T.P. Bean, M. Obst. 2013. Genomics in marine monitoring: New opportunities for assessing marine health status. Marine Pollution Bulletin 74:19-31.

Journal Article20130762DNA Barcoding, Regional Monitoring

Stein, E.D., B.P. White, R.D. Mazor, P.E. Miller, E.M. Pilgrim. 2013. Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates. PLoS ONE 8:e51273.

Journal Article20130741Bioassessment, DNA Barcoding

Ranasinghe, J.A., E.D. Stein, P.E. Miller, S.B. Weisberg. 2012. Performance of two southern California benthic community condition indices using species abundance and presence-only data: Relevance to DNA barcoding. PLoS ONE 7:e40875.

Journal Article20120713Bioassessment, DNA Barcoding, Indices Of Biotic Integrity