Callejas, I.A., Y. Kong, K. Osborn, W. Hung, M. Cira, T. Cason, A. Sloane, A. Shenkiryk, A. Masikip, A. Singh, A. Jones, J.A. Steele, J.A. Jay. 2024. The influence of urbanization and water reclamation plants on fecal indicator bacteria and antibiotic resistance in the Los Angeles River watershed: A case study with complementary monitoring methods. Science of The Total Environment 957:177577.

Damien, P., D. Bianchi, F. Kessouri, J.C. McWilliams. 2024. Extremes and Short-Term Fluctuations in Coastal Ocean Acidification and Hypoxia. Journal of Geophysical Research: Oceans DOI:10.1029/2024JC021197.

Mazor, R.D., A. James, K.M. Fritz, T. Nadeau, R.F. Edgerton, K. Nicholas. 2024. Streamflow Duration Assessment Methods for the Arid West and Western Mountains of the United States of America. Technical Report 1407. U.S. Environmental Protection Agency. Washington, D.C.

James, A., K.M. Fritz, B. Topping, T. Nadeau, R.F. Edgerton, K. Nicholas, R.D. Mazor. 2024. Streamflow Duration Assessment Method for the Great Plains of the United States. Technical Report 1408. U.S. Environmental Protection Agency. Washington, D.C.

McGill, L., T. Sleugh, C. Petrik, K.C. Schiff, K. McLaughlin, L. Aluwihare, B. Semmens. 2024. The persistent DDT footprint of ocean disposal, and ecological controls on bioaccumulation in fishes. Proceedings of the National Academy of Sciences 121:2401500121.

Schiff, K.C., A. Zimmer-Faust, D. Nguyen, J.F. Griffith, J.A. Steele, D.E. McCargar, S. Wallace. 2024. Using HF183 to Estimate Watershed-Wide Annual Loadings of Human Fecal Pollution from Onsite Wastewater Treatment Systems. Sustainability 16:9503.

Frieder, C.A., F. Kessouri, M. Ho, M. Sutula, D. Bianchi, J.C. McWilliams, C. Deutsch, E. Howard. 2024. Effects of urban eutrophication on pelagic habitat capacity in the Southern California Bight. Frontiers in Marine Science 11:1392671.

Busch, M.H., K.S. Boersma, S.C. Cook, C.N. Jones, C. Loflen, R.D. Mazor, R. Stancheva, A.N. Price, R. Stubbington, M.A. Zimmer, D.C. Allen. 2024. Macroinvertebrate, algal and diatom assemblages respond differently to both drying and wetting transitions in non-perennial streams. Freshwater Biology 69:1568-1582.

McLellan, S.L., A. Chariton, A. Codello, J.S. McClary-Gutierrez, M.K. Schussman, E.M. Marzinelli, J.M. O'Neil, E.J. Schott, J.L. Bowen, J.H. Vineis, L. Maignien, C. Lemonnier, M. Perennou, K.S. Gibbs, G.J. Zhou, K.M.Y. Leung, M. Kirs, J.F. Griffith, J.A. Steele, S.E. Wearer, A.L. O'Brien, D. Song, S. Liang, J. Li, L. Airoldi, F.P. Mancuso, P.S. Salomon, A.W. Silva-Lima RC Pereira, A.B. Boehm, E.W.X. Lim, S. Wuertz, E. Fernandez, E. Teira, M.L. Liao, Y.W. Dong, P.D. Steinberg. 2024. Universal microbial indicators provide surveillance of sewage contamination in harbours worldwide. Nature Water DOI:10.1038/s44221-024-00315-5.

Southern California Wetlands Recovery Project. 2024. Assessing Wetland Recovery: Building Capacity to Understand and Support Regional Wetland Health and Resilience – Development of a Coastal Wetland Sentinel Site Network. Technical Report 1393.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fassman-Beck, E., E. Tiernan, D. Nguyen, R. Butler. 2024. Turf Replacement BMPs to Reduce Dry and Wet Weather Runoff. Technical Report 1391. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sytsma, A., D. Philippus, J.M. Wolfand, K. Irving, K.T. Taniguchi-Quan, E.D. Stein, T.S. Hogue. 2024. Channel restoration in urbanized systems: Guiding design using ecological flow targets and future management scenarios. Journal of the American Water Resources Association DOI:10.1111/1752-1688.13232.

McWilliams, J.C., P. Damien, F. Kessouri. 2024. Circulation and dispersal in California’s Borderland Basins. Progress in Oceanography 229:103349.

Keenum, I., N.J. Lin, A. Logan-Jackson, A.J. Gushgari, N. D'Souza, J.A. Steele, D. Kaya, L.R. Gushgari. 2024. Optimizing Wastewater Surveillance: The Necessity of Standardized Reporting and Proficiency for Public Health. American Journal of Public Health 114:859-863.

Lao, W., G.B. Kim. 2024. Principles of passive sampling for ex situ measurement of hydrophobic organic compounds in sediment: Key considerations on dilution, depletion, and equilibrium. Science of the Total Environment 954:176277.

Wong, C.S., W. Lao, S. Dial, D. Nguyen, R. Butler, D. Lin. 2024. Characterizing the Removal of Microplastics by California Wastewater Treatment Plants: Implications for Management Strategies. Technical Report 1378. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lohmann, R., B. Vrana, D. Muir, F. Smedes, J. Sobotka, E.Y. Zeng, L.J. Bao, I.J. Allan, P. Astrahan, T. Bidleman, D. Crowley, E. Dykyi, N. Estoppey, G. Fillmann, L. Jantunen, S. Kaserzon, K.A. Maruya, B. McHugh, B. Newman, R.M. Prats, M. Tsapakis, M. Tysklind, B.L. van Drooge, C.S. Wong. 2024. AQUA-GAPS/MONET-Derived Concentrations and Trends of PAHs and Polycyclic Musks across Global Waters. Environmental Science & Technology 58:13456-13466.

Mehinto, A.C., V. McGruer, E. Darin, K. Wong, D. Schlenk. 2024. Development and Standardization of Bioanalytical Screening Tools Part I – Final Report. Technical Report 1381.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mehinto, A.C., V. McGruer, D. Schlenk. 2024. Development and Standardization of Bioanalytical Screening Tools Part II – Protocols for Laboratory and Data Analysis. Technical Report 1381.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiernan, E., E. Fassman-Beck, N. Lombardo. 2024. Effects of Postprocessing Decisions on Flow-Weighted Event Mean Concentrations. Journal of Sustainable Water in the Built Environment 10:04024005.

Sherrod, H., N. Leong, H. Hapich, F. Gomez, S. Moore, B. Maurer, S. Coffin, L.M. Thornton Hampton, T. Hale, R. Nelson, C. Murphy-Hagan, O.O. Fadare, A. Kukkola, H.C. Lu, L. Markley, W. Cowger. 2024. One4All: An Open Source Portal to Validate and Share Microplastics Data and Beyond. The Journal of Open Source Software 9:6715.

Hodges, B.R., S. Sharior, E. Tiernan, E. Jenkins, G. Riano-Briceno, C. Davila-Hernandez, E. Madadi-Kandjani, C.W. Yu. 2024. Introducing SWMM5+. Journal of Environmental Engineering 150:02524003.

Bo, T., J.C. McWilliams, C.A. Frieder, K.A. Davis, M. Chamecki. 2024. Nutrient Replenishment by Turbulent Mixing in Suspended Macroalgal Farms. Geophysical Research Letters DOI:10.1029/2024GL109128.

Xin, D., J.M. Hudson, A. Sigman-Lowery, Y. Chin. 2024. Distribution and composition of redox-active species and dissolved organic carbon in Arctic lacustrine porewaters. Arctic, Antarctic, and Alpine Research 56:2371534.

Rinehart, S.A., J.M. Dybiec, J.B. Walker, L. Simpson, J.A. Cherry. 2024. Effects of burrowing crabs on coastal sediments and their functions: A systematic meta-analysis. Ecosphere 15:e4927.

Schiff, K.C., J.F. Griffith, J.A. Steele, A. Gonzalez-Fernandez. 2024. Summary of Technical Research: Quantifying Sources of Human Fecal Pollution in the Lower San Diego River Watershed. Technical Report 1380. Southern California Coastal Water Research Project. Costa Mesa, CA.

Wong, C.S., S. Dial, W. Lao. 2024. Stormwater Monitoring Coalition Laboratory Guidance Document (Fourth Edition). Technical Report 1379. Southern California Coastal Water Research Project. Costa Mesa, CA.

Wang, P., J. Li, M.Y. Xie, C.C. Wu, C.S. Wong, E.Y. Zeng. 2024. Utility of a modified o-DGT passive sampler for measurement of bisphenol analogues in freshwater and coastal waters. Science of the Total Environment 931:172978.

Le-Duy Pham, A., P. Damien, D. McCoy, M. Mar, F. Kessouri, J.C. McWilliams, J. Moffett, D. Bianchi. 2024. The Shelf-To-Basin Transport of Iron From the Northern U.S. West Coast to the Pacific Ocean. Global Biogeochemical Cycles DOI:10.1029/2023GB008029.

Brander, S.M., A. Konig, B.C. Almroth, L.M. Thornton Hampton. 2024. The Potential for Toxicity to Fishes from Micro- and Nanoplastics, and Their Additives. in: K.L. Willett, N. Aluru (eds.), Toxicology of Fishes (2nd ed.) pp. 362-391. CRC Press. Boca Raton, FL.

Mehinto, A.C., S.M. Brander, S. Siddiqui. 2024. Adverse Outcome Pathways and Their Relevance. in: S. Siddiqui, S.M. Brander (eds.), Aquatic Ecotoxicology: Understanding Pollutants, Aquatic Organisms, and their Environments pp. 139-145. Springer Cham. New York, NY.

Wong, C.S., S. Coffin, C.M. Rochman, S.B. Weisberg. 2024. Informing methods for detecting and quantifying microplastics through the lens of a global intercalibration exercise: An editorial overview of the special issue and beyond. Chemosphere 356:141662.

Rothman, J.A., A. Saghir, A.G. Zimmer-Faust, K. Langlois, K. Raygoza, J.A. Steele, J.F. Griffith, K.L. Whiteson. 2024. Longitudinal Sequencing and Variant Detection of SARS-CoV-2 across Southern California Wastewater. Applied Microbiology 4:635-649.

Mayer, P.M., K.D. Moran, E.L. Miller, S.M. Brander, S. Harper, M. Garcia-Jaramillo, V. Carrasco-Navarro, K.T. Ho, R.M. Burgess, L.M. Thornton Hampton, E.F. Granek, M. McCauley, J.K. McIntyre, E.P. Kolodziej, X. Hu, A.J. Williams, B.A. Beckingham, M.E. Jackson, R.D. Sanders-Smith, C.L. Fender, G.A. King, M. Bollman, S.S. Kaushal, B.E. Cunningham, S.J. Hutton, J. Lang, H.V. Goss, S. Siddiqui, R. Sutton, D. Lin, M. Mendez. 2024. Where the rubber meets the road: Emerging environmental impacts of tire wear particles and their chemical cocktails. Science of the Total Environment 927:171153.

Lie, A., A.G. Zimmer-Faust, R.E. Diner, E. Kunselman, Z. Daniel, K. Van Artsdalen, M.C. Salas Garcia, J.A. Gilbert, D. Shultz, J. Chokry, K. Langlois, J. Smith. 2024. Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster. Environmental Monitoring and Assessment 196:447.

Doughty, C.L., H. Gu, R.F. Ambrose, E.D. Stein, E. Borgnis Sloane, M. Martinez, K.C. Cavanaugh. 2024. Climate drivers and human impacts shape 35-year trends of coastal wetland health and composition in an urban region. Ecosphere DOI:10.1002/ecs2.4832.

Kessouri, F., M. Sutula, D. Bianchi, M. Ho, P. Damien, J.C. McWilliams, C.A. Frieder, L. Renault, H. Frenzel, K. McLaughlin, C. Deutsch. 2024. Cross-shore transport and eddies promote large scale response to urban eutrophication. Scientific Reports 14:7240.

Mazor, R.D. 2024. Bioassessment Survey of the Stormwater Monitoring Coalition: Workplan for Years 2021 through 2025 Version 4.0 (2024). Technical Report 1174. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gillett, D.J., R.D. Mazor, M. Sutula, A. Holt. 2024. Reach-scale models show heterogeneity of stream benthic invertebrate responses to eutrophication stress. Ecological Indicators 160:111791.

Wong, C.S., S.B. Weisberg. 2024. Development of an accreditation process for analytical methods to measure microplastics in drinking water for regulatory monitoring. Chemosphere 353:141568.

Mehinto, A.C., E. Darin, D.J. Greenstein, K. Wong. 2024. Screening for Emerging Contaminants in the Santa Ana Region. Technical Report 1358. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hinds, J.B., T. Garg, S. Hutmacher, A. Nguyen, Z. Zheng, J.F. Griffith, J.A. Steele, A. Gonzalez Fernandez, K.C. Schiff. 2024. Assessing the defecation practices of unsheltered individuals and their contributions to microbial water quality in an arid, urban watershed. Science of the Total Environment 920:170708.

Rogers, J.D., F.D.L. Leusch, B. Chambers, K.D. Daniels, L.J. Everett, R. Judson, K. Maruya, A.C. Mehinto, P.A. Neale, K. Paul-Friedman, R. Thomas, S.A. Snyder, J. Harrill. 2024. High-Throughput Transcriptomics of Water Extracts Detects Reductions in Biological Activity with Water Treatment Processes. Environmental Science & Technology 58:2027-2037.

Lao, W., S. Dial, M. Salmon, C.S. Wong. 2024. Development and validation of an acid/alkaline digestion method for efficient microplastic extraction from wastewater treatment plant effluents: Sulfuric acid concentration and contact time do matter. Science of the Total Environment 917: 170528.

Kelly, R.P., D.M. Lodge, K.N. Lee, S. Theroux, A.J. Sepulveda, C.A. Scholin, J.M. Craine, E.A. Allan, K.M. Nichols, K.M. Parsons, K.D. Goodwin, Z. Gold, F.P. Chavez, R.T. Noble, C.L. Abbott, M.R. Baerwald, A.M. Naaum, P.M. Thielen, A.L. Simons, C.L. Jerde, J.J. Duda, M.E. Hunter, J.A. Hagan, R.S. Meyer, J.A. Steele, M.Y. Stoeckle, H.M. Bik, C.P. Meyer, E.D. Stein, K.E. James, A.C. Thomas, E. Demir-Hilton, M.A. Timmers, J.F. Griffith, M.J. Weise, S.B. Weisberg. 2024. Toward a national eDNA strategy for the United States. Environmental DNA DOI:10.1002/edn3.432.

Stein, E.D., C.L. Jerde, E. Andruszkiewicz Allan, A.J. Sepulveda, C.L. Abbott, M.R. Baerwald, J. Darling, K.D. Goodwin, R.S. Meyer, M.A. Timmers, P.M. Thielen. 2024. Critical considerations for communicating environmental DNA science. Environmental DNA DOI:10.1002/edn3.472.

Rinehart, S.A., J.M. Dybiec, P. Richardson, J.B. Walker, J.D. Peabody, J.A. Cherry. 2024. Researcher effects on the biological structure and edaphic conditions of field sites and implications for management. Ecosphere DOI:10.1002/ecs2.4750.

Brown, J.S., R.D. Mazor. 2023. An assessment of the biological condition of streams in the San Francisco Bay. Technical Report 1340. Southern California Coastal Water Research Project. Costa Mesa, CA.

Smith, J., J.A. Cram, M.P. Berndt, V. Hoard, D. Shultz, A.C. Deming. 2023. Quantifying the linkages between California sea lion (Zalophus californianus) strandings and particulate domoic acid concentrations at piers across Southern California. Frontiers in Marine Science 10:1278293.

Starks, M., C.M. Schaefer, K.M. Jeffries, D. Deslauriers, K.H. Luong, C.S. Wong, M.L. Hanson, C.W. Knapp. 2023. Presence of antibiotic resistance genes in the receiving environment of Iqaluit’s wastewater treatment plant in water, sediment, and clams sampled from Frobisher Bay, Nunavut: a preliminary study in the Canadian Arctic. Arctic Science 9:919-927.

Fassman-Beck, E., K.C. Schiff, R. Butler. 2023. Development of the SMC Regional BMP Monitoring Network 2020-2023. Technical Report 1352. Southern California Coastal Water Research Project. Costa Mesa, CA.

Philo, S.E., K.B. De Leon, R.T. Noble, N.A. Zhou, R. Alghafri, I. Bar-Or, A. Darling, N. D'Souza, O. Hachimi, D. Kaya, S. Kim, K. Gaardbo Kuhn, B.A. Layton, C. Mansfeldt, B. Oceguera, T.S. Radniecki, J.L. Ram, L.P. Saunders, A. Shrestha, L.B. Stadler, J.A. Steele, B.S. Steveson, J.R. Vogel, K. Bibby, A.B. Boehm, R.U. Halden, J. Delgado Vela. 2023. Wastewater surveillance for bacterial targets: current challenges and future goals. Applied and Environmental Microbiology DOI:10.1128/aem.01428-23.

Ho, M., F. Kessouri, C.A. Frieder, M. Sutula, D. Bianchi, J.C. McWilliams. 2023. Effect of ocean outfall discharge volume and dissolved inorganic nitrogen load on urban eutrophication outcomes in the Southern California Bight. Scientific Reports 13:22148.

Mazor, R.D. 2023. A standard taxonomic effort (STE) for terrestrial arthropods collected from dry streams in California and Arizona. Technical Report 1343. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., J. Olson, T. Clark. 2023. A standard taxonomic effort (STE) for bryophytes collected from dry streambeds in California and Arizona. Technical Report 1344. Southern California Coastal Water Research Project. Costa Mesa, CA.

Goodrich, K.A., N. Ulibarri, R. Matthew, E.D. Stein, M. Brand, B.F. Sanders. 2023. Toward improved sediment management and coastal resilience through efficient permitting in California. Environmental Management 72:558–567.

Damien, P., D. Bianchi, J.C. McWilliams, F. Kessouri, C. Deutsch, R. Chen, L. Renault. 2023. Enhanced Biogeochemical Cycling Along the U.S. West Coast Shelf. Global Biogeochemical Cycles DOI:10.1029/2022GB007572.

Ulses, C., C. Estournel, P. Marsaleix, K. Soetaert, M. Fourrier, L. Coppola, D. Lefevre, F. Touratier, C. Goyet, V. Guglielmi, F. Kessouri, P. Testor, X. Durrieu de Madron. 2023. Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region. Biogeosciences 20:4683-4710.

Gillett, D.J., S.B. Weisberg, S.R. Alin, D. Cadien, R. Velarde, K. Barwick, C. Larsen, A. Latker. 2023. Changes in the macrobenthic infaunal community of the Southern California continental margin over five decades in relation to oceanographic factors. Marine Ecology Progress Series 722:65-88.

Smith, J., E. Eggleston, M.D.A. Howard, S. Ryan, J. Gichuki, K. Kennedy, A. Tyler, M. Beck, S. Huie, D.A. Caron. 2023. Historic and recent trends of cyanobacterial harmful algal blooms and environmental conditions in Clear Lake, California: A 70-year perspective. Elementa: Science of the Anthropocene DOI:10.1525/elementa.2022.00115.

Wolfand, J.M., A. Sytsma, K.T. Taniguchi-Quan, E.D. Stein, T.S. Hogue. 2023. Impact of wastewater reuse on contaminants of emerging concern in an effluent-dominated river. Frontiers in Environmental Science DOI:10.3389/fenvs.2023.1091229.

Zhou, J., J.G. Izett, C.A. Edwards, P. Damien, F. Kessouri, J.C. McWilliams. 2023. Modeling the dispersal of the San Francisco Bay plume over the northern and central California shelf. Estuarine, Coastal and Shelf Science 287:108336.

Damien, P., D. Bianchi, F. Kessouri, J.C. McWilliams. 2023. Modulation of Phytoplankton Uptake by Mesoscale and Submesoscale Eddies in the California Current System. Geophysical Research Letters DOI:10.1029/2023GL104853.

Taniguchi-Quan, K.T., K. Irving, R. Darling, D. Kim, H. McMillan, E.D. Stein. 2023. Risk-Decision Framework for Evaluating Vulnerability of Streams to Hydrologic Alteration. Technical Report 1322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Rabe, A., S. Ravuri, E. Burnor, J.A. Steele, R.S. Kantor, S. Choi, S. Forman, R. Batjiaka, S. Jain, T.M. León, D.J. Vugia, A.T. Yu. 2023. Correlation between wastewater and COVID-19 case incidence rates in major California sewersheds across three variant periods. Journal of Water & Health 21:1303-1317.

Brent, R., H. Bailey, T. Norberg-King, L. Van der Vliet, A. John Bailer. 2023. Ceriodaphnia dubia Quality Assurance Guidance Recommendations. Technical Report 1341. Southern California Coastal Water Research Project. Costa Mesa, CA.

Seybold, E.C., A. Bergstrom, C. Nathan Jones, A.J. Burgin, S. Zipper, S.E. Godsey, W.K. Dodds, M.A. Zimmer, M. Shanafield, T. Datry, R.D. Mazor, M.L. Messager, J.D. Olden, A. Ward, S. Yu, K.E. Kaiser, A. Shogren, R.H. Walker. 2023. How low can you go? Widespread challenges in measuring low stream discharge and a path forward. Limnology and Oceanography Letters DOI:10.1002/lol2.10356.

Mazor, R.D., J.S. Brown, R. Darling. 2023. Ecological conditions of dry streams in the Los Angeles region. Technical Report 1333. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gillett, D.J., A. Holt. 2023. Options, Impediments, and Supports for the Development of an Eelgrass (Zostera marina) Habitat Occupancy Model in the Embayments of Southern California. Technical Report 1334. Southern California Coastal Water Research Project. Costa Mesa, CA.

Arzeno-Soltero, I.B., B.T. Saenz, C.A. Frieder, M.C. Long, J. DeAngelo, S.J. Davis, K.A. Davis. 2023. Large global variations in the carbon dioxide removal potential of seaweed farming due to biophysical constraints. Communications Earth and Environment 4:185.

Mehinto, A.C., B. Du, E. Wenger, Z. Tian, E.P. Kolodziej, D. Apeti, K.A. Maruya. 2023. Bioanalytical and non-targeted mass spectrometric screening for contaminants of emerging concern in Southern California bight sediments. Chemosphere 331:138789.

Thornton Hampton, L.M., H. De Frond, K. Gesulga, S. Kotar, W. Lao, C. Matuch, S.B. Weisberg, C.S. Wong, S. Brander, S. Christansen, C.R. Cook, F. Du, S. Ghosal, A.B. Gray, J. Hankett, P.A. Helm, K.T. Ho, T. Kefela, G. Lattin, A. Lusher, L. Mai, R.E. McNeish, O. Mina, E.C. Minor, S. Primpke, K. Rickabaugh, V.C. Renick, S. Singh, B.V. Bavel, F. Vollnhals, C.M. Rochman. 2023. The influence of complex matrices on method performance in extracting and monitoring for microplastics. Chemosphere 334:138875.

McLaughlin, K., R.D. Mazor, M. Sutula, K.C. Schiff. 2023. Regional assessment of trash in Southern California coastal watersheds, United States. Frontiers in Environmental Science 11:1210201.

Lohmann, R., B. Vrana, D. Muir, F. Smedes, J. Sobotka, E.Y. Zeng, L. Bao, I.J. Allan, P. Astrahan, R.O. Barra, T. Bidleman, E. Dykyi, N. Estoppey, G. Fillmann, N. Greenwood, P.A. Helm, L. Jantunen, S. Kaserzon, J.V. Macias, K.A. Maruya, F. Molina, B. Newman, R.M. Prats, M. Tsapakis, M. Tysklind, B.L. van Drooge, C.J. Veal, C.S. Wong. 2023. Passive-Sampler-Derived PCB and OCP Concentrations in the Waters of the World—First Results from the AQUA-GAPS/MONET Network. Environmental Science and Technology 57:9342-9352.

Zimmer-Faust, A.G., J.F. Griffith, J.A. Steele, B. Santos, Y. Cao, L. Asato, T. Chiem, S. Choi, A. Diaz, J. Guzman, D. Laak, M. Padilla, J. Quach-Cu, M. Woo, S.B. Weisberg. 2023. Relationship between coliphage and Enterococcus at southern California beaches and implications for beach water quality management. Journal of Water Research 230:119383.

Rothman, J.A., A. Saghir, S. Chung, N. Boyajian, T. Dinh, J. Kim, J. Oval, V. Sharavanan, C. York, A.G. Zimmer-Faust, K. Langlois, J.A. Steele, J.F. Griffith, K.L. Whiteson. 2023. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020–21 reveals widespread transcription of antibiotic resistance genes. Journal of Water Research 329:119421.

Schiff, K.C., J.F. Griffith, J.A. Steele, A.G. Zimmer-Faust. 2023. Dry and Wet Weather Survey for Human Fecal Sources in the San Diego River Watershed. Water 15:2239.

Diner, R.E., A.G. Zimmer-Faust, E. Cooksey, S. Allard, S.M. Kodera, E. Kunselman, Y. Garodia, M.P. Verhougstraete, A.E. Allen, J.F. Griffith, J.A. Gilbert. 2023. Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. Applied and Environmental Microbiology DOI:10.1128/aem.00318-23.

Kenitz, K.M., E.C. Orenstein, C.R. Anderson, A.J. Barth, C. Briseno-Avena, D.A. Caron, M.L. Carter, E. Eggleston, P.J.S. Franks, J.T. Fumo, J.S. Jaffe, K.A. McBeain, A. Odell, K. Seech, R. Shipe, J. Smith, D.A.A. Taniguchi, E.L. Venrick, A.D. Barton. 2023. Convening Expert Taxonomists to Build Image Libraries for Training Automated Classifiers. Limnology and Oceanography Bulletin DOI:10.1002/lob.10584.

Gillett, D.J., R.D. Mazor, A.E. Holt, R. Darling, R. Butler. 2023. Instructions for Application of the Rapid Screening Causal Assessment (RSCA) Tools v 2.0 in California’s Streams. Technical Report 1310. Southern California Coastal Water Research Project. Costa Mesa, CA.

Munno, K., A.L. Lusher, E.C. Minor, A. Gray, K. Ho, J. Hankett, C.T. Lee, S. Primpke, R.E. McNeish, C.S. Wong, C. Rochman. 2023. Patterns of microparticles in blank samples: A study to inform best practices for microplastic analysis. Chemosphere 333:138883.

Drewes, J.E., P. Anderson, N. Denslow, D.C.G. Muir, A. Olivieri, D. Schlenk, S.A. Snyder. 2023. Monitoring Strategies for Constituents of Emerging Concern (CECs) in California's Aquatic Ecosystems. Technical Report 1302. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sandoval-Belmar, M., J. Smith, A.R. Moreno, C. Anderson, R.M. Kudela, M. Sutula, F. Kessouri, D.A. Caron, F.P. Chavez, D. Bianchi. 2023. A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia harmful algal blooms along the California coast. Harmful Algae 126:102435.

Gross, S., K.M. Fritz, T.L. Nadeau, R.D. Mazor, M. Eddy, B. Topping, R.F. Edgerton, K. Nicholas. 2023. Development and Evaluation of the Beta Streamflow Duration Assessment Methods for the Northeast and Southeast. Technical Report 1321. U.S. Environmental Protection Agency. Washington, D.C..

Simons, A.L., N. Aulerich, H. Carlson, I. Chandra, J. Chancellor, G. Gemayel, D.J. Gillett, D. Levene, J. Lin, G. Nichol, H. Patel, S. Zhu. 2023. Using Zeta Diversity in Describing the Health of Soft Sediment Benthic Macroinvertebrates in the Southern California Bight. Journal of Coastal Research 39:418-430.

Smith, J., D. Shultz, A. Lie, S. Theroux. 2023. Diversity and Prevalence of Cyanobacteria and Cyanotoxins in Los Angeles Region Recreational Lakes and Reservoirs. Technical Report 1309. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., C.S. Wong. 2023. How to establish detection limits for environmental microplastics analysis. Chemosphere 327:138456.

Siu, J., E.D. Stein, J.S. Brown. 2023. When is Aquatic Resource Type Conversion Appropriate: A Framework for Cleaning Sand out of the Gears and a Case Study for McInnis Marsh. Wetland Science and Practice 41:70-85.

Simons, A.L., S. Theroux, M. Osborne, S. Nuzhdin, R.D. Mazor, J.A. Steele. 2023. Zeta diversity patterns in metabarcoded lotic algal assemblages as a tool for bioassessment. Ecological Applications DOI:10.1002/eap.2812.

Stein, E.D., J.B. Walker, K. O'Connor, R. Clark, C. Whitcraft. 2023. Development of a Statewide Estuary Monitoring Program to Evaluate California's Estuarine Marine Protected Areas - Estuary Marine Protected Area Program Overview. Technical Report 1315. California Ocean Protection Council. Sacramento, CA.

Walker, J.B., E.D. Stein, K. O'Connor, R. Clark, C. Whitcraft, S. Garcia, B. Hughes, A. Cooper, D. Jacobs, M. Abrecht, J. Largier, R. Roettger, C. Toms. 2023. Estuary Marine Protected Area - Monitoring Protocol. Technical Report 1315.A. Ocean Protection Council. Sacramento, CA.

O'Connor, K., R. Clark, B. Fulkerson, J.B. Walker, E.D. Stein, C. Whitcraft, S. Garcia. 2023. Estuary Marine Protected Area - 2021 Data Analysis Report. Technical Report 1315.B. California Ocean Protection Council. Sacramento, CA.

Stein, E.D., J.B. Walker, K. O'Connor, C. Toms. 2023. Estuary Marine Protected Area - Monitoring Program Implementation Blueprint. Technical Report 1315.C. California Ocean Protection Council. Sacramento, CA.

Lao, W. 2023. Incorporating performance reference compounds in retractable/reusable solid phase microextraction fiber for passive sampling of hydrophobic organic contaminants in water. Science of the Total Environment DOI:10.1016/j.scitotenv.2023.162252.

De Frond, H., W. Cowger, V. Renick, S. Brander, S. Primpke, S. Sukumaran, D. Elkhatib, S. Barnett, M. Navas-Moreno, K. Rickabaugh, F. Vollnhals, B. O'Donnell, A. Lusher, E. Lee, W. Lao, G. Amarpuri, G. Sarau, S. Christiansen. 2023. What determines accuracy of chemical identification when using microspectroscopy for the analysis of microplastics?. Chemosphere DOI:10.1016/j.chemosphere.2022.137300.

DeAngelo, J., B.T. Saenz, I.B. Arzeno-Soltero, C.A. Frieder, M.C. Long, J. Hamman, K.A. Davis, S.J. Davis. 2023. Economic and biophysical limits to seaweed farming for climate change mitigation. Natural Plants 9:45-57.

Langknecht, T., W. Lao, C.S. Wong, S. Kotar, D.E. Khatib, S. Robinson, R.M. Burgess, K.T. Ho. 2023. Comparison of two procedures for microplastics analysis in sediments based on an interlaboratory exercise. Chemosphere DOI:10.1016/j.chemosphere.2022.137479.

Kenitz, K.M., C.R. Anderson, M.L. Carter, E. Eggleston, K. Seech, R. Shipe, J. Smith, E.C. Orenstein, P.J.S. Franks, J.S. Jaffe, A.D. Barton . 2023. Environmental and ecological drivers of harmful algal blooms revealed by automated underwater microscopy. Limnology and Oceanography 9999:1-18.

Wang, S., W. Lao, H. Li, L. Guo, J. You. 2023. Assessing bioaccumulation potential of sediment associated fipronil degradates in oligochaete Lumbriculus variegatus based on passive sampler measured bioavailable concentration. Science of the Total Environment 863:1-7.

Stepien, C.A., S. Theroux, S.B. Weisberg. 2022. The Second National Workshop on Marine eDNA: A workshop to accelerate the incorporation of eDNA science into environmental management application. Environmental DNA DOI:10.1002/edn3.379.

Gillett, D.J., W. Enright, J.B. Walker. 2022. Southern California Bight 2018 Regional Monitoring Program: Volume III. Benthic Infauna. Technical Report 1289. Southern California Coastal Water Research Project. Costa Mesa, CA.

Kessouri, F., L. Renault, J.C. McWilliams, P. Damien, D. Bianchi. 2022. Enhancement of Oceanic Eddy Activity by Fine-Scale Orographic Winds Drives High Productivity, Low Oxygen, and Low pH Conditions in the Santa Barbara Channel. Journal of Geophysical Research: Oceans 127:1-14.

Mazor, R.D., B. Topping, T.L. Nadeau, K.M. Fritz, J. Kelso . 2022. Development and Evaluation of the Beta Streamflow Duration Assessment Method for the Western Mountains: Data Supplement. Technical Report 1222.B. U.S. Environmental Protection Agency. Washington, D.C..

Thornton Hampton, L.M., S.M. Brander, S. Coffin, M. Cole, L. Hermabessiere, A.A. Koelmans, C.M. Rochman. 2022. Characterizing microplastic hazards: which concentration metrics and particle characteristics are most informative for understanding toxicity in aquatic organisms?. Microplastics and Nanoplastics 2:20.

Stein, E.D., A.C. Horne, R.E. Tharme, J. Tonkin. 2022. Editorial: Environmental flows in an uncertain future. Frontiers in Environmental Science 10:1-5.

Cheng, Y., D.A. Vaccari, E. Fassman-Beck. 2022. Phosphorus Leaching Behavior from Extensive Green Roof Substrates. Journal of Sustainable Water in the Built Environment 8:06022003.

Cheng, Y., D.A. Vaccari, B.G. Johannesson, E. Fassman-Beck. 2022. Multiyear Study on Phosphorus Discharge from Extensive Sedum Green Roofs with Substrate Amendments. Journal of Sustainable Water in the Built Environment 8:04022014.

Ainslie, W., E.D. Stein. 2022. Additional Considerations for Incorporating Ecosystem Services into Compensatory Mitigation Programs. in: C.A. Jackson,, T.H. DeWitt (eds.), Incorporating Ecosystem Services into Restoration Effectiveness Monitoring & Assessment: Frameworks, Tools, and Examples pp. 177-201. U.S. Environmental Protection Agency. Washington, D.C..

Moreno, A.R., C. Anderson, R.M. Kudela, M. Sutula, C. Edwards, D. Bianchi. 2022. Development, calibration, and evaluation of a model Pseudo-nitzschia and domoic acid production for regional ocean modeling studies. Harmful Algae 118:102296.

James, A., T.L. Nadeau, K.M. Fritz, B. Topping, R.F. Edgerton, R.D. Mazor . 2022. User Manual for a Beta Streamflow Duration Assessment Method for the Great Plains of the United States - Version 1.0.. Technical Report 1292. U.S. Environmental Protection Agency. Washington, D.C..

Frieder, C.A., C. Yan, M. Chamecki, D. Dauhajre, J.C. McWilliams, J. Infante, M.L. McPherson, R.M. Kudela, F. Kessouri, M. Sutula, I.B. Arzeno-Soltero, K.A. Davis. 2022. A Macroalgal Cultivation Modeling System (MACMODS): Evaluating the Role of Physical-Biological Coupling on Nutrients and Farm Yield. Frontiers in Marine Science DOI:10.3389/fmars.2022.752951.

Winston, R.J., E. Fassman-Beck. 2022. Permeable Pavement Maintenance: A Review of Literature to Assess Clogging, Predict Maintenance Frequency, and Compare Maintenance Techniques. Technical Report 1280. Southern California Coastal Water Research Project. Costa Mesa, CA.

Kim, S., L.C. Kennedy, M.K. Wolfe, C.S. Criddle, D.H. Duong, A. Topol, B.J. White, R.S. Kantor, K.L. Nelson, J.A. Steele, K. Langlois, J.F. Griffith, A.G. Zimmer-Faust, S.L. McLellan, M.K. Schussman, M. Ammerman, K.R. Wigginton, K.M. Bakker, A.B. Boehm. 2022. SARS-CoV-2 RNA is enriched by orders of magnitude in primary settled solids relative to liquid wastewater at publicly owned treatment works. Environmental Science Water Research and Technology 8:757-770.

Kotar, S., R. McNeish, C. Murphy-Hagan, V. Renick, C.T. Lee, C. Steele, A. Lusher, C. Moore, E. Minor, J. Schroeder, P. Helm, K. Rickabaugh, H.D. Frond, K. Gesulga, W. Lao, K. Munno, L.M. Thornton Hampton, S.B. Weisberg, C.S. Wong, G. Amarpuri, R.C. Andrews, S.M. Barnett, S. Christiansen W Cowgeri, K. Crampond, F. Du, A.B. Gray, J. Hankett, K. Ho, J. Jaeger, C. Lilley, L. Mai, O. Mina, E. Lee, S. Primpke, S. Singh, J. Skovly, T. Slifko, S. Sukumaran, B. Bavel, J.V. Brocklin, F. Vollnhals, C. Wu, C.M. Rochman . 2022. Quantitative assessment of visual microscopy as a tool for microplastic research: Recommendations for improving methods and reporting. Chemosphere 308:1-9.

Walker, J.B., D.J. Gillett, M. Sutula. 2022. Establishing biologically relevant sediment organic matter thresholds for estuaries and embayments of the Southern California Bight, USA. Ecological Indicators 143:1-12.

Kenkel, C.D., J. Smith, K.A. Hubbard, C. Chadwick, N. Lorenzen, A.O. Tatters, D.A. Caron. 2022. Reduced representation sequencing accurately quantifies relative abundance and reveals population-level variation in Pseudo-nitzschia ssp.. Harmful Algae 118:1-13.

Brand, M.W., K. Buffington, J.B. Rogers, K. Thorne, E.D. Stein, B.F. Sanders . 2022. The Multi-Decadal Simulation of Marsh Topography Under Sea Level Rise and Episodic Sediment Loads. Journal of Geophysical Research 127:1-20.

Fassman-Beck, E., K.C. Schiff. 2022. SMC Regional BMP Monitoring Network Work Plan 2022-2023 - Version 1.0. Technical Report 1270. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., M.E. McClain, A. Sengupta, T.E. Grantham, J. Zimmerman, S.M. Yarnell . 2022. Allocations and Environmental Flows. in: J. Rouillard, C. Babbitt, E. Challies, J.D. Rinaudo (eds.), Water Resources Allocation and Agriculture: Transitioning from Open to Regulated Access pp. 49-59. IWA Publishing. London, UK.

Schiff, K.C., E. Darin, E. Fassman-Beck, G. Shusterman, L. Flores, T. Hale, C. Beegan . 2022. Monitoring Guidance To Support Adaptive Watershed Management. Technical Report 1257. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., M. Sutula, S. Theroux, M. Beck, P.R. Ode. 2022. Eutrophication thresholds associated with protection of biological integrity in California wadeable streams. Ecological Indicators 142:109180.

Sutula, M., J. Butcher, S. Sarkar, S. Roy. 2022. Science Supporting Decisions on Management of Eutrophication in Elkhorn Slough Estuary. Technical Report 1259. Southern California Coastal Water Research Project. Costa Mesa, CA.

Biggs, T., A. Zeigler, K.T. Taniguchi-Quan. 2022. Runoff and sediment loads in the Tijuana River: Dam effects, extreme events, and change during urbanization. Journal of Hydrology: Regional Studies 42:101162.

Ollison, G.A., S.K. Hu, J.V. Hopper, B.P. Stewart, J. Smith, J.L. Beatty, L.K. Rink, D.A. Caron. 2022. Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight). Environmental Microbiology 2022:1-19.

Wolfand, J.M., A. Sytsma, V.L. Hennon, E.D. Stein, T.S. Hogue. 2022. Dilution and Pollution: Assessing the Impacts of Water Reuse and Flow Reduction on Water Quality in the Los Angeles River Basin. Environmental Science and Technology DOI:10.1021/acsestwater.2c00005.

Coffin, S., S.B. Weisberg, C. Rochman, M. Kooi, A.A. Koelmans. 2022. Risk Characterization of Microplastics in San Francisco Bay, California. Microplastics and Nanoplastics 2:19.

Thornton Hampton, L.M., H. Bouwmeester, S.M. Brander, S. Coffin, M. Cole, L. Hermabessiere, A.C. Mehinto, E. Miller, C.M. Rochman, S.B. Weisberg. 2022. Research recommendations to better understand the potential health impacts of microplastics to humans and aquatic ecosystems. Microplastics and Nanoplastics 2:18.

Jenkins, T., B.D. Persaud, W. Cowger, K. Szigeti, D.G. Roche, E. Clary, S. Slowinski, B. Lei, A. Abeynayaka, E.S. Nyadjro, T. Maes, L.M. Thornton Hampton, M. Bergmann, J. Aherne, A.S. Mason, J.F. Honek, F. Rezanezhad, A.L. Lusher, A.M. Booth, R.D.L. Smith, P. Van Cappellan. 2022. Current State of Microplastic Pollution Research Data: Trends in Availability and Sources of Open Data. Frontiers in Environmental Science 10:912107.

Murphy, B.M., K. Russell, C.C. Stillwell, R. Hawley, M. Scoggins, K.G. Hopkins, M.J. Burns, K.T. Taniguchi-Quan, K.H. Macneal, R. Smith. 2022. Closing the gap on wicked urban stream restoration problems: A framework to integrate science and community values. Freshwater Science 41:3.

Mehinto, A.C., S. Coffin, A.A. Koelmans, S.M. Brander, M. Wagner, L.M. Thornton Hampton, A.G. Burton, E. Miller, T. Gouin, S.B. Weisberg, C.M. Rochman. 2022. Risk-based management framework for microplastics in aquatic ecosystems. Microplastics and Nanoplastics 2:17.

Florea, K., B. Stewart, E. Webb, D.A. Caron, J. Smith. 2022. Environmental Drivers of Cyanobacterial Harmful Algal Blooms and Cyanotoxins in Clear Lake: 2020-2021. Technical Report 1261. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., J. Smith, D.A. Caron, R.M. Kudela, K. Loftin, K. Hayashi, R. Fadness, S. Fricke, J. Kann, M. Roethler, A. Tatters, S. Theroux. 2022. Integrative monitoring strategy for marine and freshwater harmful algal blooms and toxins across the freshwater‐to‐marine continuum. Integrated Environmental Assessment and Management DOI:10.1002/ieam.4651.

Thornton Hampton, L.M., H. Lowman, S. Coffin, E. Darin, H. De Frond, L. Hermabessiere, E. Miller, V.N. de Ruijter, A. Faltynkova, S. Kotar, L. Monclus, S. Siddiqui, J. Volker, S. Brander, A.A. Koelmans, C.M. Rochman, M. Wagner, A.C. Mehinto. 2022. A living tool for the continued exploration of microplastic toxicity. Microplastics and Nanoplastics 2:13.

McLaughlin, K., R.D. Mazor, K.C. Schiff, L.M. Thornton Hampton. 2022. Southern California Bight 2018 Regional Monitoring Program: Volume IX. Trash and Marine Debris. Technical Report 1263. Southern California Coastal Water Research Project. Costa Mesa, CA.

Coffin, S., H. Bouwmeester, S. Brander, P. Damdimopoulou, T. Gouin, L. Hermabessiere, E. Khan, A.A. Koelmans, C.L. Lemieux, K. Teerds, M. Wagner, S.B. Weisberg, S. Wright. 2022. Development and application of a health-based framework for informing regulatory action in relation to exposure of microplastic particles in California drinking water. Microplastics and Nanoplastics 2:1-30.

Maruya, K.A., W. Lao, D.R. Vandervort, R. Fadness, M. Lyons, A.C. Mehinto. 2022. Bioanalytical and chemical-specific screening of contaminants of concern in three California (USA) watersheds. Heliyon 8:e09534.

Bednarsek, N., M.W. Beck, G. Pelletier, S.L. Applebaum, R.A. Feely, R. Butler, M. Byrne, B. Peabody, J. Davis, J. Strus. 2022. Natural Analogues in pH Variability and Predictability across the Coastal Pacific Estuaries: Extrapolation of the Increased Oyster Dissolution under Increased pH Amplitude and Low Predictability Related to Ocean Acidification. Environmental Science and Technology 56:9015-9028.

Eddy, M., K. Fritz, T.L. Nadeau, J. Kelso, S. Gross, B. Topping, R.F. Edgerton, R.D. Mazor. 2022. Development and Evaluation of the Beta Streamflow Duration Assessment Method (SDAM) for the Great Plains (GP). Technical Report 1292.A. U.S. Environmental Protection Agency. Washington, D.C..

Stein, E.D., J.S. Brown, A. Canney, M. Mirkhanian, H. Lowman, K. O'Connor, R. Clark. 2022. Prioritizing Stream Protection, Restoration and Management Actions Using Landscape Modeling and Spatial Analysis. Water 14:1375.

Zimmer-Faust, A.G., J.F. Griffith, J. Freshwater, J. Peng, S. Goong, S.B. Weisberg. 2022. Relationships between indicators and pathogens in shellfish and water in Newport Bay, CA. Technical Report 1193. Southern California Coastal Water Research Project. Costa Mesa, CA.

Wade, T.J., B.F. Arnold, K.C. Schiff, J.M. Colford Jr, S.B. Weisberg, J.F. Griffith, A.P. Dufour. 2022. Health risks to children from exposure to fecally-contaminated recreational water. PLOS One DOI:10.1371/journal.pone.0266749.

Stein, E.D., J.S. Brown, A. Canney, M. Mirkhanian, H. Lowman, K. O'Connor, R. Clark. 2022. Prioritizing Stream Protection, Restoration and Management Actions Using Landscape Modeling and Spatial Analysis. Technical Report 1246. Southern California Coastal Water Research Project. Costa Mesa, CA.

Coffin, S., S.B. Weisberg. 2022. Understanding health efects pathways and thresholds: flling a critical need to support microplastics management. Microplastics and Nanoplastics 2:11.

Hawley, R.J., K. Russell, K.T. Taniguchi-Quan. 2022. Restoring geomorphic integrity in urban streams via mechanistically‑based storm water management: minimizing excess sediment transport capacity. Urban Ecosystems DOI:10.1007/s11252-022-01221-y.

Taniguchi-Quan, K.T., K. Irving, R.A. Wildman Jr., A. Poresky, J.R. Feldman, E.D. Stein, A. Aprahamian, C. Rivers, G. Sharp. 2022. Evaluation of Hydrologic Alteration to Inform Flow Management Decisions in South Orange County Coastal Watersheds. Technical Report 1245. Southern California Coastal Water Research Project. Costa Mesa, CA.

Grantham, T.E., D.M. Carlisle, J. Howard, B. Lane, R. Lusardi, A. Obester, S. Sandoval-Solis, B. Stanford, E.D. Stein, K.T. Taniguchi-Quan, S.M. Yarnell, J.K.H. Zimmerman. 2022. Modeling Functional Flows in California’s Rivers. Frontiers in Environmental Science 10:787473.

De Frond, H., L.M. Thornton Hampton, S. Kotar, K. Gesulga, C. Matuch, W. Lao, S.B. Weisberg, C.S. Wong, C.M. Rochman . 2022. Monitoring microplastics in drinking water: An interlaboratory study to inform effective methods for quantifying and characterizing microplastics. Chemosphere 298:134282.

Stein, E.D., J.S. Brown, N. Bishop, R. Kihslinger, B.J. Topping, P. Hough. 2022. An Integrated Framework for Evaluating Wetland and Stream Compensatory Mitigation. Technical Report 1209. Environmental Protection Agency. Washington, DC.

Stein, E.D., J.S. Brown, T. Smith, C. Cox, N. Nibbelink, K. Sheehan Hill, B.J. Topping, P. Hough. 2022. An Integrated Framework for Evaluating Wetland and Stream Compensatory Mitigation - Summary of Pilot Applications. Technical Report 1210. Environmental Protection Agency. Washington, DC.

Wolfand, J.M., K.T. Taniguchi-Quan, R. Abdi, E. Gallo, K. Irving, D. Philippus, J.B. Rogers, E.D. Stein, T.S. Hogue. 2022. Balancing water reuse and ecological support goals in an effluent dominated river. Journal of Hydrology X 15:100124.

Southern California Bight 2018 Regional Monitoring Program Sediment Quality Assessment Planning Committee. 2022. Southern California Bight 2018 Regional Monitoring Program Sediment Quality Assessment Synthesis Report. Technical Report 1248. Southern California Coastal Water Research Project. Costa Mesa, CA.

Elko, N., D. Foster, G. Kleinheinz, B. Raubenheimer, S. Brander, J. Kinzelman, J.P. Kritzer, D. Munroe, C. Storlazzi, M. Sutula, A. Mercer, S. Coffin, C. Fraioli, L. Ginger, E. Morrison, G. Parent-Doliner, C. Akan, A. Canestrelli, M. DiBenedetto, J. Lang, J. Simm. 2022. Human and ecosystem health in coastal systems. Shore & Beach 90:64-91.

Zimmer-Faust, A.G., J.F. Griffith, J.A. Steele, L. Asato, T. Chiem, S. Choi, A. Diaz, J. Guzman, M. Padilla, J. Quach-Cu, V. Ruiz, B. Santos, M. Woo, S.B. Weisberg. 2022. Assessing cross-laboratory performance for quantifying coliphage using EPA Method 1642. Journal of Applied Microbiology DOI:10.1111/jam.15523.

Stein, E.D., J.S. Brown, J.D. Siu. 2022. Aquatic Resource Type Conversion Evaluation Framework Version 2.0. Technical Report 1110. Southern California Coastal Water Research Project. Costa Mesa, CA.

Walker, J.B., S. Rinehart, G. Greenberg-Pines, W.K. White, R. DeSantiago, D.A. Lipson, J.D. Long. 2022. Aboveground competition influences density-dependent effects of cordgrass on sediment biogeochemistry. Ecology and Evolution 12:e8722.

Taniguchi-Quan, K.T., K. Irving, E.D. Stein, A. Poresky, R.A. Wildman Jr., A. Aprahamian, C. Rivers, G. Sharp, S.M. Yarnell, J.R. Feldman. 2022. Developing Ecological Flow Needs in a Highly Altered Region: Application of California Environmental Flows Framework in Southern California, USA. Frontiers in Environmental Science 10:787631.

Irving, K., K.T. Taniguchi-Quan, A. Aprahamian, C. Rivers, G. Sharp, R.D. Mazor, S. Theroux, A. Holt, R. Peek, E.D. Stein. 2022. Application of Flow-Ecology Analysis to Inform Prioritization for Stream Restoration and Management Actions. Frontiers in Environmental Science 9:787462.

Wang, P., J.K. Challis, Z.X. He, C.S. Wong, E.Y. Zeng. 2022. Effects of biofouling on the uptake of perfluorinated alkyl acids by organic-diffusive gradients in thin films passive samplers. Environmental Science: Processes & Impacts 24:242.

Reed, D.J., C. Brown, A.D. Steinman, M. Sutula, D.H. Wardrop. 2022. Restoration in the Context of Climate Change. in: D.H. Wardrop, W.G. Boggess, C. Brown, C.B. Burke, P.M. Dixon, C.T. Driscoll, K.R. Reddy, D.J. Reed, A.D. Steinman, M. Sutula, J.R. Walters (eds.), Progress Toward Restoring the Everglades: The Ninth Biennial Review—2022 pp. 137-168. National Academies of Sciences, Engineering and Medicine. Washington, D.C..

Sutula, M., J. Butcher, M. Schmidt, C. Boschen, R.D. Mazor, D.J. Gillett, K.T. Taniguchi-Quan, K. Irving, D. Shultz. 2022. Science Supporting Decisions on Biostimulatory Targets and Management of Eutrophication in the Main Stem of the Santa Margarita River Watershed. Technical Report 1185. Southern California Coastal Water Research Project. Costa Mesa, CA.

Brander, S.M., J.W. White, B.M. DeCourten, K. Major, S.J. Hutton, R.E. Connon, A.C. Mehinto. 2022. Accounting for transgenerational effects of toxicant exposure in population models alters the predicted long-term population status. Environmental Epigenetics 8(1):1-12.

Ahmed, W., S.L. Simpson, P.M. Bertsch, K. Bibby, A. Bivins, L.L. Blackall, S. Bofill-Mas, A. Bosch, J. Brandão, P.M. Choi, M. Ciesielski, E. Donner, N. D'Souza, A.H. Farnleitner, D. Gerrity, R. Gonzalez, J.F. Griffith, P. Gyawali, C.N. Haas, K.A. Hamilton, H.C. Hapuarachchi, V.J. Harwood, R. Haque, G. Jackson, S.J. Khan, W. Khan, M. Kitajima, A. Korajkic, G. La Rosa, B.A. Layton, E. Lipp, S.L. McLellan, B. McMinn, G. Medema, S. Metcalfe, W.G. Meijer, J.F. Mueller, H. Murphy, C.C. Naughton, R.T. Noble, S. Payyappat, S. Petterson, T. Pitkänen, V.B. Rajal, B. Reyneke, F.A. Roman Jr, J.B. Rose, M. Rusiñol, M.J. Sadowsky, L. Sala-Comorera, Y.X. Setoh, S.P. Sherchan, K. Sirikanchana, W. Smith, J.A. Steele, R. Sabburg, E.M. Symonds, P. Thai, K.V. Thomas, J. Tynan, S. Toze, J. Thompson, A.S. Whiteley, J.C. Wong, D. Sano, S. Wuertz, I. Xagoraraki, Q. Zhang, A.G. Zimmer-Faust, O.C. Shanks. 2022. Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance. Science of the Total Environment DOI:10.1016/j.scitotenv.2021.149877.

Yarnell, S.M., A. Willis, A. Obester, R.A. Peek, R.A. Lusardi, J. Zimmerman, T.E. Grantham, E.D. Stein. 2022. Functional Flows in Groundwater-Influenced Streams: Application of the California Environmental Flows Framework to Determine Ecological Flow Needs. Frontiers in Environmental Science 9:788295.

Ramus, J., E. Garvey, S. Brown, E. Fassman-Beck, E.D. Stein. 2022. Assessing the State of Knowledge and Research Needs for Stormwater Harvesting. Technical Report 1305. The Water Research Foundation. Alexandria, VA .

Gouin, T., R. Ellis-Hutchings, L.M. Thornton Hampton, C.L. Lemieux, S.L. Wright. 2022. Screening and prioritization of nano- and microplastic particle toxicity studies for evaluating human health risks – development and application of a toxicity study assessment tool. Microplastics and Nanoplastics 2:2.

Abdi, R., A. Rust, J.M. Wolfand, K.T. Taniguchi-Quan, K. Irving, D. Philippus, E.D. Stein, T.S. Hogue. 2022. Thermal Suitability of the Los Angeles River for Cold Water Resident and Migrating Fish Under Physical Restoration Alternatives. Frontiers in Environmental Science 9:749085.

Vanderpont, A.K., C. Lobson, Z. Lu, K. Luong, M. Arentsen, T. Vera, D. Moore, M.S. White, R.S. Prosser, C.S. Wong, M.L. Hanson. 2022. Fate of thiamethoxam from treated seeds in mesocosms and response of aquatic invertebrate communities. Ecotoxicology DOI:10.1007/s10646-021-02500-8.

Peek, R., K. Irving, S.M. Yarnell, R. Lusardi, E.D. Stein, R.D. Mazor. 2022. Identifying Functional Flow Linkages Between Stream Alteration and Biological Stream Condition Indices Across California. Frontiers in Environmental Science 9:790667.

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Mazor, R.D., B.J. Topping, T. Nadeau, K.M. Fritz, J.E. Kelso, R.A. Harrington, W.S. Beck, K. McCune, A.O. Allen, R. Leidy, J. Robb, G. David. 2021. Implementing an Operational Framework to Develop a Streamflow Duration Assessment Method: A Case Study from the Arid West United States. Water 13:3310.

Mazor, R.D., B. Topping, T.L. Nadeau, K.M. Fritz, J. Kelso, R. Harrington, W. Beck, K. McCune, H. Lowman, A. Allen, R. Leidy, J.T. Robb, G.C.L. David. 2021. User Manual for a Beta Streamflow Duration Assessment Method for the Arid West of the United States. Technical Report 1100.A. U.S. Environmental Protection Agency. Washington, D.C..

Abdalla, E.M.H., V. Pons, V. Stovin, S. De-Ville, E. Fassman-Beck, K. Alfredsen, T.M. Muthanna. 2021. Evaluating different machine learning methods to simulate runoff from extensive green roofs. Hydrology and Earth System Sciences 25:5917–5935.

Wang, S., W. Lao, Y. He, H. Shi, Q. Ye, J. Ma. 2021. Promoting the stability and adsorptive capacity of Fe3O4-embedded expanded graphite with an aminopropyltriethoxysilane-polydopamine coating for the removal of copper(II) from water. RSC Advances 11:35673-35686.

Schiff, K.C., M. Beck, E. Fassman-Beck. 2021. North Orange County Municipal Separate Storm Sewer System (MS4) Monitoring Evaluation. Technical Report 1221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., J. Zimmerman, S.M. Yarnell, B. Stanford, B. Lane, K.T. Taniguchi-Quan, A. Obester, T.E. Grantham, R.A. Lusardi, S. Sandoval-Solis. 2021. The California Environmental Flows Framework: Meeting the Challenges of Developing a Large-Scale Environmental Flows Program. Frontiers in Environmental Science 9:769943.

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Bednarsek, N., R. Ambrose, P. Calosi, R.K. Childers, R.A. Feely, S.Y. Litvin, W.C. Long, J.I. Spicer, J. Strus, J. Taylor, F. Kessouri, M. Roethler, M. Sutula, S.B. Weisberg. 2021. Synthesis of Thresholds of Ocean Acidification Impacts on Decapods. Frontiers in Marine Science 8:651102.

Du, B., W. Lao, C.S. Wong, K. McLaughlin, K.C. Schiff. 2021. Scrutinizing surficial sediment along a 600-km-long urban coastal zone: Occurrence and risk assessment of fipronil and its three degradates. Science of the Total Environment DOI:10.1016/j.scitotenv.2021.151071.

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Mazor, R.D., K. McCune. 2021. Review of flow duration methods and indicators of flow duration in the scientific literature: Western Mountains. Technical Report 1222. Southern California Coastal Water Research Project. Costa Mesa, CA.

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Mekkes, L., W. Renema, N. Bednarsek, S.R. Alin, R.A. Feely, J. Huisman, P. Roessingh, K.T.C.A. Peijnenburg. 2021. Pteropods make thinner shells in the upwelling region of the California Current Ecosystem. Scientific Reports DOI:10.1038/s41598-021-81131-9.

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Gillett, D.J., L. Gilbane, K.C. Schiff. 2021. Characterizing Community Structure of Benthic Infauna From the Continental Slope of the Southern California Bight. Frontiers in Marine Science DOI:10.3389/fmars.2021.605858/full.

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Diehl, D.W. 2020. Key to the Jacks (Family Carangidae). in: M.S. Love, J.K. Passarelli (eds.), Miller and Lea’s Guide to Coastal Marine Fishes of California pp. 235-242. UC Agriculture and Natural Resources. Davis, CA.

Love, M.S., D.W. Diehl. 2020. Key to Driftfishes (Family Nomeidae). in: J.K. Passarelli (ed.), pp. 342. UC Agriculture and Natural Resources. Davis, CA.

Henkel, S.K., L. Gilbane, A.J. Phillips, D.J. Gillett. 2020. Cross-Shelf Habitat Suitability Modeling for Benthic Macrofauna. Technical Report 1173. U.S. Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Poti, M., S.K. Henkel, J.J. Bizzarro, T.F. Hourigan, M.E. Clarke, C.E. Whitmire, A. Powell, M.M. Yoklavich, L. Bauer, A.J. Winship, M. Coyne, D.J. Gillett, L. Gilbane, J. Christensen, C.F.G. Jeffrey. 2020. Cross-Shelf Habitat Suitability Modeling: Characterizing Potential Distributions of Deep-Sea Corals, Sponges, and Macrofauna Offshore of the US West Coast. Technical Report 1171. U.S. Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Zimmer-Faust, A.G., J.A. Steele, J.F. Griffith, K.C. Schiff. 2020. The challenges of microbial source tracking at urban beaches for Quantitative Microbial Risk Assessment (QMRA). Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2020.111546.

Taylor, J., E.D. Stein, M.W. Beck, R.F. Ambrose. 2020. The impact of climate change induced alterations of streamflow and stream temperature on the distribution of riparian species. PLoS ONE DOI:10.1371/journal.pone.0242682.

Winfrey, B.K., M. Ho, W. Wang, Y.J. Li, R.F. Ambrose. 2020. Design aspects and plant species affect pollutant removal in Southern California stormwater biofilters. Blue-Green Systems DOI:10.2166/bgs.2020.012.

Theroux, S., R.D. Mazor, M.W. Beck, P.R. Ode, E.D. Stein, M. Sutula. 2020. Predictive biological indices for algae populations in diverse stream environments. Ecological Indicators DOI:10.1016/j.ecolind.2020.106421.

Nissen, K.A., M. Borst, E. Fassman-Beck. 2020. Bioretention planter performance measured by lag and capture. Hydrological Processes DOI:10.1002/hyp.13927.

Bednarsek, N., J.A. Newton, M.W. Beck, S.R. Alin, R.A. Feely, N.R. Christman, T. Klinger. 2020. Severe biological effects under present-day estuarine acidification in the seasonally variable Salish Sea. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.142689.

Cai, W.J., R.A. Feely, J.M. Testa, M. Li, W. Evans, S.R. Alin, Y.Y. Xu, G. Pelletier, A. Ahmed, D.J. Greeley, J.A. Newton, N. Bednarsek. 2020. Natural and Anthropogenic Drivers of Acidification in Large Estuaries. Annual Review of Marine Science DOI:10.1146/annurev-marine-010419-011004.

Wang, P.F., J.K. Challis, K.H. Luong, T.C. Vera, C.S. Wong. 2020. Calibration of organic-diffusive gradients in thin films (o-DGT) passive samplers for perfluorinated alkyl acids in water. Chemosphere DOI:10.1016/j.chemosphere.2020.128325.

Fritz, K.M., T. Nadeau, J. Kelso, W.S. Beck, R.D. Mazor, R.A. Harrington, B.J. Topping. 2020. Classifying Streamflow Duration: The Scientific Basis and an Operational Framework for Method Development. Water DOI:10.3390/w12092545.

Mazor, R.D., A. Santana, C. Endris, K. O'Connor. 2020. Assessing the representativeness of bioassessment samples using spatial statistical networks (SSNs) for watersheds in California: A guide for aquatic resource managers. Technical Report 1143. Southern California Coastal Water Research Project. Costa Mesa, CA.

Du, B., Z. Tian, K.T. Peter, E.P. Kolodziej, C.S. Wong. 2020. Developing Unique Nontarget High-Resolution Mass Spectrometry Signatures to Track Contaminant Sources in Urban Waters. Environmental Science & Technology Letters DOI:10.1021/acs.estlett.0c00749.

Lao, W. 2020. Fiproles as a proxy for ecological risk assessment of mixture of fipronil and its degradates in effluent-dominated surface waters. Water Research DOI:10.1016/j.watres.2020.116510.

Wyer, H., D. Polhemus, S.L. Moore, S.B. Weisberg, S. Coffin, C.M. Rochman. 2020. Steps Scientists Can Take to Inform Aquatic Microplastics Management: A Perspective Informed by the California Experience. Applied Spectroscopy 74:971-975.

Gillett, D.J., L. Gisbane, K.C. Schiff. 2020. Benthic habitat condition of the continental shelf surrounding oil and gas platforms in the Santa Barbara Channel, Southern California. Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2020.111662.

Grantham, T., J. Mount, E.D. Stein, S.M. Yarnell. 2020. Making the Most of Water for the Environment: A Functional Flows Approach for California’s Rivers. Technical Report 1142. Public Policy Institute of California. San Francisco, CA.

Paul, M.J., B. Jessup, L.R. Brown, J.L. Carter, M. Cantonati, D.F. Charles, J. Gerritsen, D.B. Herbst, R. Stancheva, J. Howard, B. Isham, R. Lowe, R.D. Mazor, P.K. Mendex, P.R. Ode, A. O'Dowd, J. Olson, Y. Pan, A.C. Rehn, S. Spaulding, M. Sutula, S. Theroux. 2020. Characterizing benthic macroinvertebrate and algal biological condition gradient models for California wadeable Streams, USA. Ecological Indicators DOI:10.1016/j.ecolind.2020.106618.

Howard, E.M., J.L. Penn, H. Frenzel, B.A. Seibel, D. Blanchi, L. Renault, F. Kessouri, M. Sutula, J.C. McWilliams, C. Deutsch. 2020. Climate-driven aerobic habitat loss in the California Current System. Science Advances DOI:10.1126/sciadv.aay3188 .

Winship, A.J., J.T. Thorson, M.E. Clarke, H.M. Coleman, B. Costa, S.E. Georgian, D.J. Gillett, A. Gruss, M.J. Henderson, T.F. Hourigan, D.D. Huff, N. Kreidler, J.L. Pirtle, J.V. Olson, M. Poti, C.N. Rooper, M.F. Sigler, S. Veihman, C.E. Whitmire. 2020. Good Practices for Species Distribution Modeling of Deep-Sea Corals and Sponges for Resource Management: Data Collection, Analysis, Validation, and Communication. Frontiers in Marine Science DOI:10.3389/fmars.2020.00303.

McCune, K., D.J. Gillett, E.D. Stein. 2020. Methods and Guidance on Assessing the Ecological Functioning of Submerged Aquatic Vegetation in Southern California Estuaries and Embayments. Technical Report 1136. Southern California Coastal Water Research Project. Costa Mesa, CA.

Taniguchi-Quan, K.T., R.D. Mazor, J.S. Brown, R. Guill, M. Yeager, A. Suter, J. Rudolph, W. Isham, S. Johnson. 2020. 2018-2019 Report on the SMC Stream Survey. Technical Report 1127. Southern California Coastal Water Research Project. Costa Mesa, CA.

Weisberg, S.B., F. Chan, J. Barry, A. Boehm, S. Busch, S. Cooley, R. Feely, L. Levin. 2020. Enhancing California’s Ocean Acidification and Hypoxia Monitoring Network. Technical Report 1137. Ocean Protection Council. Sacramento, CA.

Ulibarri, N., K.A. Goodrich, P. Wagle, M. Brand, R. Matthew, E.D. Stein, B.F. Sanders. 2020. Barriers and opportunities for beneficial reuse of sediment to support coastal resilience. Ocean and Coastal Management DOI:10.1016/j.ocecoaman.2020.105287.

Martindale, S., S.B. Weisberg, S. Coffin. 2020. Status of Legislation and Regulatory Drivers for Microplastics in California. Technical Report 1133. Horiba. Irvine, CA.

Aylagas, E., A. Borja, X. Pochon, A. Zaiko, N. Keeley, K. Bruce, P. Hong, G.M. Ruiz, E.D. Stein, S. Theroux, N. Geraldi, A. Ortega, L. Gajdzik, D.J. Coker, Y. Katan, T. Hikmawan, A. Saleem, S. Alamer, B.H. Jones, C.M. Duarte, J. Pearman, S. Carvalho. 2020. Translational Molecular Ecology in practice: Linking DNA-based methods to actionable marine environmental management. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.140780.

Beck, M.W., C. O'Hara, J.S. Stewart-Lowndes, R.D. Mazor, S. Theroux, D.J. Gillett, B. Lane, G. Gearheart. 2020. The importance of open science for biological assessment of aquatic environments. PeerJ DOI:10.7717/peerj.9539.

Du, B., C.S. Wong, K. McLaughlin, K.C. Schiff. 2020. Southern California Bight 2018 Regional Monitoring Program: Volume II. Sediment Chemistry. Technical Report 1130. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bednarsek, N., G. Pelletier, A. Ahmed, R.A. Feely. 2020. Chemical Exposure Due to Anthropogenic Ocean Acidification Increases Risks for Estuarine Calcifiers in the Salish Sea: Biogeochemical Model Scenarios. Frontiers in Marine Science DOI:10.3389/fmars.2020.00580.

Du, B., J. Smith, K. Maruya, C.S. Wong. 2020. Comparison of Novel Passive Sampling Methods to Identify Cyanotoxins and their Sources. Technical Report 1123. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., S. Lowe, K. Gehrts. 2020. Survey of Sediment Quality in the Sacramento-San Joaquin Delta. Technical Report 686. Southern California Coastal Water Research Project. Costa Mesa, CA.

Major, K.M., B.M. DeCourten, J. Li, M. Britton, M.L. Settles, A.C. Mehinto, R.E. Connon, S.M. Brander. 2020. Early Life Exposure to Environmentally Relevant Levels of Endocrine Disruptors Drive Multigenerational and Transgenerational Epigenetic Changes in a Fish Model. Frontiers in Marine Science DOI:10.3389/fmars.2020.00471.

Ashby, K., A. Davis, G. Gearheart, J. Harwood, T. Hogue, D. Kleis, S. Luce, P. Ode, D. Senn. 2020. Southern California Stormwater Monitoring Coalition Five-Year Research Agenda 2019-2024. Technical Report 1126. Southern California Coastal Water Research Project. Costa Mesa, CA.

Brown, A.K., J. Ackerman, N. Cicek, C.S. Wong. 2020. In situ kinetics of human pharmaceutical conjugates and the impact of transformation, deconjugation, and sorption on persistence in wastewater batch bioreactors. Environmental Pollution DOI:10.1016/j.envpol.2020.114852.

Martyniuk, C.J., A.C. Mehinto, N.D. Denslow. 2020. Organochlorine pesticides: Agrochemicals with potent endocrinedisrupting properties in fish. Molecular and Cellular Endocrinology DOI:10.1016/j.mce.2020.110764.

Mignon, C., O. Pasqueron de Fommervault, F. Kessouri. 2020. Emission Sources, Fluxes and Spatiotemporal Distribution of Nutritive Resources. in: C. Mignon, P. Nival, A. Sciandra (eds.), The Mediterranean Sea in the Era of Global Change 1: 30 Years of Multidisciplinary Study of the Ligurian Sea pp. 105-138. Wiley. New York, NY.

DeFlorio-Barker, S., D. Holman, R. Landolfi, B.F. Arnold, J.M. Colford, S.B. Weisberg, K.C. Schiff, E.A. Sams, T.J. Wade. 2020. Incidence and public health burden of sunburn among beachgoers in the United States. Preventive Medicine DOI:10.1016/j.ypmed.2020.106047.

Parks, A.N., D.J. Greenstein, K. McLaughlin, K.C. Schiff. 2020. Southern California Bight 2018 Regional Monitoring Program: Volume I. Sediment Toxicity. Technical Report 1117. Southern California Coastal Water Research Project. Costa Mesa, CA.

Challis, J.K., A. Parajas, J.C. Anderson, E. Asiedu, J.W. Martin, C.S. Wong, M.S. Ross. 2020. Photodegradation of bitumen-derived organics in oil sands process-affected water. Environmental Science: Processes & Impacts 22:1243-1255.

Fassman-Beck, E., K.C. Schiff, D. Apt. 2020. Evaluating Potential Methods to Quantify Stormwater Capture. Technical Report 1116. Southern California Coastal Water Research Project. Costa Mesa, CA.

Beck, M.W., R.D. Mazor. 2020. A decision framework for evaluating bioassessment samples and landscape models. Technical Report 1115. Southern California Coastal Water Research Project. Costa Mesa, CA.

Anderson, J.C., P. Jabari, A. Parajas, E. Loeb, K.H. Luong, A. Vahedi, C.S. Wong. 2020. Evaluation of cold-weather wastewater nitrification technology for removal of polar chemicals of emerging concern from rural Manitoba wastewaters. Chemosphere DOI:10.1016/j.chemosphere.2020.126711.

Bay, S.M., A.N. Parks. 2020. Occurrence and Bioaccumulation of Dissolved Organochlorines in San Diego Bay. Technical Report 1109. Southern California Coastal Water Research Project. Costa Mesa, CA.

Wu, L., R. Wang, C.L. Huang, C.C. Wu, C.S. Wong, L.J. Bao, E.Y. Zeng. 2020. Impact of passive sampler protection apparatus on sediment porewater profiles of hydrophobic organic compounds. Chemosphere DOI:10.1016/j.chemosphere.2020.126534.

Alava, J.J., P. Calle, A. Tirape, G. Biedenbach, O.A. Cadena, K. Maruya, W. Lao, W. Aguirre, P.J. Jimenez, G.A. Dominguez, G.D. Bossart, P.A. Fair. 2020. Persistent Organic Pollutants and Mercury in Genetically Identified Inner Estuary Bottlenose Dolphin (Tursiops truncatus) Residents of the Guayaquil Gulf, Ecuador: Ecotoxicological Science in Support of Pollutant Management and Cetacean Conservation. Frontiers in Marine Science DOI:10.3389/fmars.2020.00122.

Wang, S., W. Lao, H. Li, J. You. 2020. Measuring bioconcentration factors of sediment-associated fipronil in Lumbriculus variegatus using passive sampling techniques. Journal of Hazardous Materials DOI:10.1016/j.jhazmat.2020.122420.

Baalousha, M., J. Wang, M. Nabi, F. Loosli, R. Valenca, S.K. Mohanty, N. Afrooz, E. Cantando, N. Aich. 2020. Stormwater green infrastructures retain high concentrations of TiO2 engineered (nano)-particles. Journal of Hazardous Materials DOI:10.1016/j.jhazmat.2020.122335.

Nezlin, N.P., C. Beegan, A. Feit, J.R. Gully, A. Latker, K. McLaughlin, M.J. Mengel, G.L. Robertson, A. Steele, S.B. Weisberg. 2020. Colored Dissolved Organic Matter (CDOM) as a tracer of effluent plumes in the coastal ocean. Regional Studies in Marine Science DOI:10.1016/j.rsma.2020.101163.

Bednarsek, N., R.A. Feely, M.W. Beck, S.R. Alin, S.A. Siedlecki, P. Calosi, E.L. Norton, C. Saenger, J. Strus, D. Greeley, N.P. Nezlin, M. Roethler, J.I. Spicer. 2020. Exoskeleton Dissolution With Mechanoreceptor Damage in Larval Dungeness Crab Related to Severity of Present-day Ocean Acidification Vertical Gradients. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.136610.

Harvey, M.E., S.N. Giddings, E.D. Stein, J.A. Crooks, C. Whitcraft, T. Gallien, J.L. Largier, L.L. Tiefenthaler, H. Meltzer, G. Pawlak, K. Thorne, K. Johnston, R. Ambrose, S.C. Schroeter, H.M. Page, H. Elwany. 2020. Effects of Elevated Sea Levels and Waves on Southern California Estuaries During the 2015–2016 El Niño. Estuaries and Coasts DOI:10.1007/s12237-019-00676-1.

Sultana, R., M. Mroczek, A. Sengupta, S. Dallman, E.D. Stein. 2020. Improving Effective Impervious Estimates to Inform Stormwater Management. Water Resources Management DOI:10.1007/s11269-019-02474-7.

Yarnell, S.M., E.D. Stein, J.A. Webb, T. Grantham, R.A. Lusardi, J. Zimmerman, R.A. Peek, B.A. Lane, J. Howard, S. Sandoval-Solis. 2020. A Functional Flows Approach to Selecting Ecologically Relevant Flow Metrics for Environmental Flow Applications. River Research and Applications DOI:10.1002/rra.3575.

Stein, E.D., C.L. Doughty, J. Lowe, M. Cooper, E. Sloane, D. Bram. 2020. Establishing Targets for Regional Coastal Wetland Restoration Planning Using Historical Ecology and Future Scenario Analysis: The Past, Present, Future Approach. Estuaries and Coasts DOI:10.1007/s12237-019-00681-4.

Chiotti, D., L. Ritter, D. Schlenk, C. Wilen, K.C. Schiff. 2020. Alternatives to Glyphosate for Vegetation Management in Los Angeles County. Technical Report 1103. Southern California Coastal Water Research Project. Costa Mesa, CA.

Li, X., M. Sivaganesan, C.A. Kelty, P. Clinton, J.R. Reichman, Y. Johnson, W. Matthews, S. Bailey, O.C. Shanks, A.G. Zimmer-Faust. 2019. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE DOI:10.1371/journal.pone.0216827.

Mazor, R.D., B. Topping, R. Kwok, T. Nadeau, R. Leidy, K. Fritz, R. Harrington, J. Kelso, A. Allen, J. Robb, G. David, S. Jensen. 2019. Validation of Two Streamflow-duration Assessment Methods (SDAMs) in the Arid Southwest of the United States. Technical Report 1100. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gomez-Alvarez, V., N.J. Ashbolt, J.F. Griffith, J.S. Domingo, J. Lu. 2019. Whole-Genome Sequencing of Four Campylobacter Strains Isolated from Gull Excreta Collected from Hobie Beach (Oxnard, CA, USA). Microbiology Resource Announcements 8:1-3.

Simons, A.L., R.D. Mazor, S. Theroux. 2019. Using Co‐occurrence Network Topology in Assessing Ecological Stress in Benthic Macroinvertebrate Communities. Ecology and Evolution DOI:10.1002/ece3.5751.

Giraldo, M.A., S. Dark, P. Pendleton, E.D. Stein, R.D. Mazor, J. Andreas. 2019. Environmental predictors of stream flow in semi-arid watersheds for biological assessments. Ecological Indicators 104:429-438.

Smith, J., A. Lie, E.L. Seubert, N. Crowley, G. Robertson, D.A. Caron. 2019. Co-occurring Dissolved Algal Toxins Observed at Multiple Coastal Sites in Southern California via Solid Phase Adsorption Toxin Tracking. Toxicon DOI:10.1016/j.toxicon.2019.10.005.

Gillett, D.J., L. Gisbane, K.C. Schiff. 2019. Benthic Infauna of the Southern California Bight Continental Slope: Characterizing Community Structure for the Development of an Index of Disturbance. Technical Report 1096. US Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Leon, P., N. Bednarsek, P. Welsham, K. Cook, S.E. Hartman, D. Wall-Palmer, J. Hindson, K. Mackenzie, L. Webster, E. Bresnan. 2019. Relationship between shell integrity of pelagic gastropods and carbonate chemistry parameters at a Scottish Coastal Observatory monitoring site. ICES Journal of Marine Science DOI:10.1093/icesjms/fsz178.

Mazor, R.D., V.H. Resh, D.M. Rosenberg. 2019. Use of Aquatic Insects in Bioassesment. in: R.W. Merritt, K.W. Cummins, M.B. Berg (eds.), An Introduction to the Aquatic Insects of North America pp. 141-164. Kendall Hunt Publishing Company. Dubuque, IA.

Baltar, F., B. Bayer, N. Bednarsek, S. Deppeler, R. Escribano, C.E. Gonzalez, R.L. Hansman, R.H. Mishra, M.A. Moran, D.J. Repeta, C. Robinson, E. Sintes, C. Tamburini, L.E. Valentin, G.J. Hemdi. 2019. Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems. Trends in Ecology and Evolution DOI:10.1016/j.tree.2019.07.003.

Canonico, G., P.L. Buttigieg, E. Montes, F.E. Muller-Karger, C. Steplen, D. Wright, A. Benson, B. Helmuth, M. Costello, I. Sousa-Pinto, H. Saeedi, J. Newton, W. Appeltabs, N. Bednarsek, L. Bodrossy, B.D. Best, A. Brandt, K.D. Goodwin, K. Iken, A.C. Marques, P. Miloslavich, M. Ostrowski, W. Turner, E.P. Achterberg, T. Barry, O. Defeo, G. Bigatti, L. Henry, B. Ramiro-Sanchez, P. Duran, T. Morato, J.M. Roberts, A. Garchia-Alegre, M.S. Cuadrado, B. Murton. 2019. Global Observational Needs and Resources for Marine Biodiversity. Frontiers in Marine Science 6:1-20.

Beck, M., R.D. Mazor, S. Theroux, K.C. Schiff. 2019. The Stream Quality Index: A multi-indicator tool for enhancing environmental management. Environmental and Sustainability Indicators DOI:10.1016/j.indic.2019.100004.

Beck, M., R.D. Mazor, S. Johnson, K. Wisenbaker, J. Westfall, P.R. Ode, R. Hill, C. Loflen, M. Sutula, E.D. Stein. 2019. Prioritizing Management Goals for Stream Biological Integrity Within the Developed Landscape Context. Freshwater Science DOI:10.1086/705996.

Stein, E.D., Y. Sanchez. 2019. Review of Recreational Uses and Associated Flow Needs Along the Main-stem of Los Angeles River. Technical Report 1088. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., J. Olson, M. Robison, A. Caudillo, J.S. Brown. 2019. Assessing the biological condition of dry ephemeral and intermittent streams. Technical Report 1089. Southern California Coastal Water Research Project. Costa Mesa, CA.

Steele, J.A., D. Ebentier, A.G. Zimmer-Faust, J.F. Griffith, K.C. Schiff. 2019. Los Coches Creek Microbial Source Tracking Study. Technical Report 1087. Southern California Coastal Water Research Project. Costa Mesa, CA.

Beck, M., E.T. Sherwood, J.R. Henkel, K. Dorans, K. Ireland, P. Varela. 2019. Assessment of the Cumulative Effects of Restoration Activities on Water Quality in Tampa Bay, Florida. Estuaries and Coasts DOI:10.1007/s12237-019-00619-w.

Le, C., S. Wu, C. Hu, M. Beck, X. Yang. 2019. Phytoplankton decline in the eastern North Pacific transition zone associated with atmospheric blocking. Geophysical Research Letters DOI:10.1111/gcb.14737.

Taylor, J., E.D. Stein, M. Beck, K. Flint, A. Kinoshita. 2019. Vulnerability of Stream Biological Communities in Los Angeles and Ventura Counties to Climate Change Induced Alterations of Flow and Temperature. Technical Report 1084. Southern California Coastal Water Research Project. Costa Mesa, CA.

Beck, M., R.D. Mazor, S. Theroux, K.C. Schiff. 2019. The Stream Quality Index: A Multi-Indicator Tool for Enhancing Environmental Management Communication. Technical Report 1080. Southern California Coastal Water Research Project. Costa Mesa, CA.

Beck, M., K. Kittleson, K. O’Connor. 2019. Analysis of the Juvenile Steelhead and Stream Habitat Database, Santa Cruz County, California: Web Products and Recommendations. Technical Report 1082. Southern California Coastal Water Research Project. Costa Mesa, CA.

Afrooz, N., M. Beck, T. Hale, L. McKee, K.C. Schiff. 2019. BMP Performance Monitoring Data Compilation to Support Reasonable Assurance Analysis. Technical Report 1081. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gillett, D.J., R.D. Mazor, S.B. Norton. 2019. Selecting comparator sites for ecological causal assessment based on expected biological similarity. Freshwater Science 38:554-565.

Lyon, K., D. Kacev, A. Preti, D.J. Gillett, H. Dwar, S. Kohin. 2019. Species-Specific Characteristics Influence Contaminant Accumulation Trajectories and Signatures Across Ontogeny in Three Pelagic Shark Species. Environmental Science & Technology DOI:10.1021/acs.est.8b07355.

Cossaboon, J.M., E. Hoh, S.J. Chivers, D.W. Weller, K. Danil, K.A. Maruya, N.G. Dodder. 2019. Apex marine predators and ocean health: Proactive screening of halogenated organic contaminants reveals ecosystem indicator species. Chemosphere 221:656-644.

Gudino-Elizondo, N., T.W. Biggs, R.L. Bingner, E.J. Langendoen, T. Kretzschmar, E.V. Taguas, K.T. Taniguchi-Quan, D. Liden, Y. Yuan. 2019. Modelling Runoff and Sediment Loads in a Developing Coastal Watershed of the US-Mexico Border. Water 11:1024.

Gillett, D.J., A.N. Parks, S.M. Bay. 2019. Calibration of the Multivariate AZTI Marine Biotic Index (M-AMBI) for Potential Inclusion into California Sediment Quality Objective Assessments in San Francisco Bay. Technical Report 1070. San Francisco Estuary Institute. Richmond, CA.

Stein, E.D., J.S. Brown, A. Barrera. 2019. Aquatic Resource Type Conversion Evaluation Framework: Literature Review and Summary of Existing State of Practice. Technical Report 1074. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bednarsek, N., R.A. Feely, E.L. Howes, B.P.V. Hunt, F. Kessouri, P. Leon, R. Lischka, A.E. Maas, K. McLaughlin, N.P. Nezlin, M. Sutula, S.B. Weisberg. 2019. Systematic Review and Meta-Analysis Toward Synthesis of Thresholds of Ocean Acidification Impacts on Calcifying Pteropods and Interactions With Warming. Frontiers in Marine Science 6:227.

Simons, A.L., R.D. Mazor, E.D. Stein, S. Nuzhdin. 2019. Using alpha, beta, and zeta diversity in describing the health of stream‐based benthic macroinvertebrate communities. Ecological Applications DOI:10.1002/eap.1896.

Buitenhuis, E.T., C.L. Quere, N. Bednarsek, R. Schiebel. 2019. Large Contribution of Pteropods to Shallow CaCO3 Export. Global Biogeochemical Cycles 33:458-468.

Schiff, K.C., J.F. Griffith, J.A. Steele, A.G. Zimmer-Faust, J.A. Soller. 2019. Inner Cabrillo Beach Microbial Source Tracking and Quantitative Microbial Risk Assessment (QMRA). Technical Report 1068. Southern California Coastal Water Research Project. Costa Mesa, CA.

Parker, S.R., S.K. Adams, R.W. Lammers, E.D. Stein, B.P. Bledsoe. 2019. Targeted hydrologic model calibration to improve prediction of ecologically-relevant flow metrics. Journal of Hydrology 573:546-556.

Engstrom-Ost, J., O. Glippa, R.A. Feely, J.E. Keister, S.R. Alin, B.R. Carter, A.K. McLaskey, K.A. Vuori, N. Bednarsek. 2019. Eco-physiological responses of copepods and pteropods to ocean warming and acidification. Scientific Reports 9:4748.

Janssen, A.W., S.L. Bush, N. Bednarsek. 2019. The shelled pteropods of the Northeastern Pacific Ocean (Mollusca: Heterobranchia, Pteropoda). Zoosymposia 13:305-346.

McCune, K., R.D. Mazor. 2019. Review of Flow Duration Methods and Indicators of Flow Duration in the Scientific Literature: Arid Southwest. Technical Report 1063. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., K.A. Maruya, D. Tsukada. 2019. An exponential model based new approach for correcting aqueous concentrations of hydrophobic organic chemicals measured by polyethylene passive samplers. Science of the Total Environment 646:11-18.

Schiff, K.C., K. McLaughlin, S.L. Moore, Y. Cao. 2019. Southern California Bight. in: C. Sheppard (ed.), World Seas: An Environmental Evaluation pp. 465-482. Academic Press. London, UK.

Doughty, C.L., K.C. Cavanaugh, R.F. Ambrose, E.D. Stein. 2019. Evaluating regional resiliency of coastal wetlands to sea level rise through hypsometry‐based modeling. Global Change Biology 25:78-92.

Bednarsek, N., R.A. Feely, M. Beck, O. Glippa, M. Kanerva, J. Engstrom-Ost. 2018. El Niño-Related Thermal Stress Coupled With Upwelling-Related Ocean Acidification Negatively Impacts Cellular to Population-Level Responses in Pteropods Along the California Current System With Implications for Increased Bioenergetic Costs. Frontiers in Marine Science 5:486.

Zimmer-Faust, A.G., C.A. Brown, A. Manderson. 2018. Statistical models of fecal coliform levels in Pacific Northwest estuaries for improved shellfish harvest area closure decision making. Marine Pollution Bulletin 137:360-369.

Lane, B.A., S. Sandoval-Solis, E.D. Stein, S.M. Yarnell, G.B. Pasternack, H.E. Dahlke. 2018. Beyond Metrics? The Role of Hydrologic Baseline Archetypes in Environmental Water Management. Environmental Management DOI:10.1007/s00267-018-1077-7.

Afrooz, A.R.M.N., K.C. Schiff. 2018. Southern California Stormwater Monitoring Coalition Unified Approach to Stormwater Monitoring. Technical Report 1059. Southern California Coastal Water Research Project. Costa Mesa, CA.

Coates, J., K.C. Schiff, R.D. Mazor, D.J. Pondella II, R.A. Schaffner, E. Whiteman. 2018. Development of a biological condition assessment index for shallow, subtidal rocky reefs in Southern California, USA. Marine Ecology DOI:10.1111/maec.12471.

Afrooz, A.R.M.N., A.K. Pitol, D. Kitt, A.B. Boehm. 2018. Role of microbial cell properties on bacterial pathogen and bacteriophage removal in biochar-modified biofilters. Environmental Science Water Research & Technology 4:2160-2169.

Collins, J., E.D. Stein. 2018. California Rapid Assessment Method for Wetlands and Riparian Areas (CRAM). in: J. Dorney, R. Savage, R. Tiner, P. Adamus (eds.), Wetland and Stream Rapid Assessments: Development, Validation, and Application pp. 353-362. Elsevier Publishers. London, UK.

Greenstein, D.J., A.N. Parks, S.M. Bay. 2018. Using spatial and temporal variability data to optimize sediment toxicity identification evaluation (TIE) study designs. Integrated Environmental Assessment and Management 15:248-258.

Lowe, J., E.D. Stein, E. Beller, J. Collins, M. Cooper, J. Crooks, H. Dennis, C. Doughty, G. Gauthier, J. Gonzalez, K. Kalchmayr, S. Kelly, K. McKnight, A. Richey, A. Robinson, E. Sloane, M. Sutula, C. Whitcraft. 2018. Wetlands on the Edge: The Future of Southern California’s Wetlands: Regional Strategy 2018. Technical Report 1055. California State Coastal Conservancy. Oakland, CA.

Peter, K.T., Z. Tian, C. Wu, P. Lin, S. White, B. Du, J.K. McIntyre, N.L. Scholz, E.P. Kolodziej. 2018. Using High-Resolution Mass Spectrometry to Identify Organic Contaminants Linked to Urban Stormwater Mortality Syndrome in Coho Salmon. Environmental Science and Technology 52:10317-10327.

Bittick, S.J., M. Sutula, P. Fong. 2018. A tale of two algal blooms: Negative and predictable effects of two common bloom-forming macroalgae on seagrass and epiphytes. Marine Environmental Research 140:1-9.

Rehn, A.C., R.D. Mazor, P.R. Ode. 2018. An Index to Measure the Quality of Physical Habitat in California Wadeable Streams. Technical Report 1053. Surface Water Ambient Monitoring Program. Sacramento, CA.

Guo, L., M. Brand, B.F. Sanders, E. Foufoula-Georgiou, E.D. Stein. 2018. Tidal asymmetry and residual sediment transport in a short tidal basin under sea level rise. Advances in Water Resources 121:1-8.

McLaughlin, K., N.P. Nezlin, S.B. Weisberg, A.G. Dickson, J.A.T. Booth, C.L. Cash, A. Feit, J.R. Gully, M.D.A. Howard, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez. 2018. Seasonal patterns in aragonite saturation state on the southern California continental shelf. Continental Shelf Research 167:77–86.

Parks, A.N., M.A. Cashman, M.M. Perron, L. Portis, M.G. Cantwell, D.R. Katz, K.T. Ho, R.M. Burgess. 2018. Magnitude of Acute Toxicity of Marine Sediments Amended with Conventional Copper and Nanocopper. Environmental Toxicology 9999:1-5.

Smith, J., P. Connell, R.H. Evans, A.G. Gellene, M.D.A. Howard, B.H. Jones, S. Kaveggia, L. Palmer, A. Schnetzer, B.N. Seegers, E.L. Seubert, A.O. Tatters, D.A. Caron. 2018. A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California. Harmful Algae DOI:10.1016/j.hal.2018.07.007.

Cao, Y., M.R. Raith, J.F. Griffith. 2018. Testing of General and Human-Associated Fecal Contamination in Waters. in: G. Karlin-Neumann, F. Bizouarn (eds.), Digital PCR: Methods and Protocols pp. 127-140. Humana Press. New York, NY.

Maruya, K.A., A.C. Mehinto, W. Lao, R. Sutton, T. Jabusch, J. Sun, D. Lin, J. Davis, R. Fadness. 2018. Pilot Monitoring of Constituents of Emerging Concern (CECs) in the Russian River Watershed (Region 1). Technical Report 1020. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, J.K., K.A. Fesenmyer, T.E. Grantham, J.H. Viers, P.R. Odes, P.B. Moyle, S.J. Kupferburg, J.L. Furnish, A. Rehn, J. Slusark, R.D. Mazor, N.R. Santos, R.A. Peek, A.N. Wright. 2018. A Freshwater Blueprint for California: Prioritizing freshwater habitat for conservation in California to maximize biodiversity and leverage existing protected areas. Freshwater Science DOI:10.1086/697996.

Sengupta, A., S.K. Adams, B.P. Bledsoe, E.D. Stein, K. McCune, R.D. Mazor. 2018. Tools for managing hydrologic alteration on a regional scale: Estimating changes in flow characteristics at ungauged sites. Freshwater Biology DOI:10.1111/fwb.13074.

Clatterbuck, C.A., R.L. Lewison, N.G. Dodder, C. Zeeman, K.C. Schiff. 2018. Seabirds as regional biomonitors of legacy toxicants on an urbanized coastline. Science of the Total Environment DOI:10.1016/j.scitotenv.2017.

Mehinto, A.C., K.J. Kroll, B.S. Jayasinghe, C.M. Lavelle, D. VanDervort, O.K. Adeyemo, S.M. Bay, K.A. Maruya, N.D. Denslow. 2018. Linking In Vitro Estrogenicity to Adverse Effects in the Inland Silverside (Menidia beryllina). Environmental Toxicology and Chemistry 37:884-892.

Sengupta, A., R.J. Hawley, E.D. Stein. 2018. Predicting Hydromodification in Streams using Non-Linear Memory Based Algorithms. A Southern California case study. Journal of Water Resources Planning and Management DOI:10.1061/(ASCE)WR.1943-5452.0000853.

Steele, J.A., A.D. Blackwood, J.F. Griffith, R.T. Noble, K.C. Schiff. 2018. Quantification of pathogens and markers of fecal contamination during storm events along popular surfing beaches in San Diego, California. Water Research 136:137-149.

Wall-Palmer, D., A.K. Burridge, E. Goetze, F.R. Stokvis, A.W. Janssen, L. Mekkes, M. Moreno-Alcántara, N. Bednarsek, T. Schiøtte, M.V. Sørensen, C.W. Smart, K.T.C.A. Peijnenburg. 2018. Biogeography and genetic diversity of the atlantid heteropods. Progress in Oceanography 160:1-25.

Jonker, M.T.O., S.A. van der Heijden, D. Adelman, J.N. Apell, R.M. Burgess, Y. Choi, L.A. Fernandez, G.M. Flavetta, U. Ghosh, P.M. Gschwend, S.E. Hale, M. Jalalizadeh, M. Khairy, M.A. Lampi, W. Lao, R. Lohman, M.J. Lydy, K.A. Maruya, S.A. Nutile, A.M.P. Oen, M.I. Rakowska, D. Reible, T.P. Rusina, F. Smedes, Y. Wu. 2018. Advancing the Use of Passive Sampling in Risk Assessment and Management of Sediments Contaminated with Hydrophobic Organic Chemicals: Results of an International Ex Situ Passive Sampling Interlaboratory Comparison. Environmental Science and Technology 52:3574-3582.

Kessouri, F., C. Ulses, C. Estournel, P. Marsaleix, T. Severin, M. Pujo-Pay, J. Caparros, P. Raimbault, O. Pasqueron de Fommervault, F. D'Ortenzio, V. Taillandier, P. Testor, P. Conan. 2018. Nitrogen and Phosphorus Budgets in the Northwestern Mediterranean Deep Convection Region. Journal of Geophysical Research: Oceans 12:9429-9454.

Kacev, D., D.J. Gillett, A.F. de Carvalho, C. Cash, S. Walther, C.D. Larsen, A. Thompson, L. Thompson, N. Bowlin, K. Goodwin, E.D. Stein. 2018. Assessment of Ichthyoplankton Metabarcoding for Routine Monitoring. Technical Report 1031. Southern California Coastal Water Research Project. Costa Mesa, CA.

Feely, R.A., R.R. Okazaki, W.J. Cai, N. Bednarsek, S.R. Alin, R.H. Bryne, A. Fassbender. 2018. The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research 158:50-60.

Hallenbeck, T., S.J. Steinberg, A. Lanier, T. Welch. 2018. Extending Esri Geoportal Server to Meet the Needs of the West Coast Ocean Data Network and Inform Regional Ocean Management. in: D.J. Wright (ed.), Ocean Solutions Earth Solutions: Second Edition pp. 167-183. Esri Press. Redlands, CA.

Bajer, P.G., M. Beck, P.J. Hundt. 2018. Effect of non-native versus native invaders on macrophyte richness: Are carp and bullheads ecological proxies?. Hydrobiologia 815:1-13.

Mazor, R.D., J.T. May, A. Sengupta, K. McCune, B.P. Bledsoe, E.D. Stein. 2018. Tools for managing hydrologic alteration on a regional scale: Setting targets to protect stream health. Freshwater Biology DOI:10.1111/fwb.13062.

Beck, M., T.W. Jabusch, P.R. Trowbridge, D.B. Senn. 2018. Four decades of water quality change in the upper San Francisco Estuary. Estuarine, Coastal and Shelf Science 212:11-22.

Stein, E.D., J. Taylor, A. Sengupta, S.M. Yarnell. 2018. Evaluating the Effect of Changes in Flow and Water Temperature on Stream Habitats and Communities in the Los Angeles/Ventura Region. Technical Report 1034. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.J. Greenstein, A.N. Parks. 2018. Spatial and Temporal Variability in Sediment Toxicity Identification Evaluations. Technical Report 1014. Southern California Coastal Water Research Project. Costa Mesa, CA.

Pelletier, M.C., D.J. Gillett, A. Hamilton, T. Grayson, V. Hansen, E.W. Leppo, S.B. Weisberg, A. Borja. 2018. Adaptation and application of multivariate AMBI (M-AMBI) in US coastal waters. Ecological Indicators 89:818-827.

Bausch, A.R., M.A. Gallego, J. Harianto, P. Thibodeau, N. Bednarsek, J.N. Havenhand, T. Klinger. 2018. Influence of bacteria on shell dissolution in dead gastropod larvae and adult Limacina helicina pteropods under ocean acidification conditions. Marine Biology 165:40.

Mazor, R.D., M. Beck, J.S. Brown. 2018. 2017 Report on the Southern California Stormwater Monitoring Coalition Regional Stream Survey. Technical Report 1029. Southern California Coastal Water Research Project. Costa Mesa, CA.

Drewes, J.E., P. Anderson, N. Denslow, W. Jakubowski, A. Olivieri, D. Schlenk, S. Snyder. 2018. Monitoring Strategies for Constituents of Emerging Concern (CECs) in Recycled Water. Technical Report 1032. Southern California Coastal Water Research Project. Costa Mesa, CA.

Parks, A.N., M.G. Cantwell, D.R. Katz, M.A. Cashman, T.P. Luxton, K.T. Ho, R.M. Burgess. 2018. Assessing the Release of Copper from Nanocopper-Treated and Conventional Copper-Treated Lumber into Marine Waters I: Concentration and Rates. Environmental Toxicology and Chemistry 37:1956-1968.

Parks, A.N., M.G. Cantwell, D.R. Katz, M.A. Cashman, T.P. Luxton, J.G. Clar, M.M. Perron, L. Portis, K.T. Ho, R.M. Burgess. 2018. Assessing the release of copper from nanocopper-treated and conventional copper-treated lumber into marine waters II: Forms and bioavailability. Environmental Toxicology and Chemistry 37:1969-1979.

Ulrich, E.M., P.L. TenBrook, L.M. McMillan, Q. Wang, W. Lao. 2018. Enantiomer-Specific Measurements of Current-Use Pesticides in Aquatic Systems. Environmental Toxicology and Chemistry 37:99-106.

Saarman, E.T., B. Owens, S.N. Murray, S.B. Weisberg, R.F. Ambrose, J.C. Field, K.J. Nielsen, M.H. Carr. 2018. An Ecological Framework for Informing Permitting Decisions on Scientific Activities in Protected Areas. Ecological Applications 13:e0199126.

Nezlin, N.P., K. McLaughlin, J.A.T. Booth, C.L. Cash, D.W. Diehl, K.A. Davis, A. Feit, R. Goericke, J.R. Gully, M.D.A. Howard, S Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez, L. Washburn, S.B. Weisberg. 2018. Spatial and Temporal Patterns of Chlorophyll Concentration in the Southern California Bight. Journal of Geophysical Research: Oceans 123:231-245.

Beck, M.W., K. Cressman, C. Griffin, J. Caffrey. 2018. Water Quality Trends Following Anomalous Phosphorus Inputs to Grand Bay, Mississippi, USA . Gulf and Caribbean Research 29:1-14.

SCCWRP Staff. 2018. SCCWRP 2018 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2018 Annual Report. Southern California Coastal Water Research Project. Costa Mesa, CA.

Arthington, A.H., J.G. Kennen, E.D. Stein, J.A. Webb. 2018. Recent advances in environmental flows science and water management - Innovation in the Anthropocene. Freshwater Biology DOI:10.1111/fwb.13108.

Kennen, J.G., E.D. Stein, J.A. Webb. 2018. Evaluating and managing environmental water regimes in a water-scarce and uncertain future. Freshwater Biology DOI:10.1111/fwb.13104.

Kessouri, F., C. Ulses, C. Estournel, P. Marsaleix, F. D'Ortenzio, T. Severin, V. Taillandier, P. Conan. 2018. Vertical Mixing Effects on Phytoplankton Dynamics and Organic Carbon Export in the Western Mediterranean Sea. Geophysical Research: Oceans DOI:10.1002/2016JC012669.

Denslow, N., K. Kroll, S. Jayasinghe, O. Adeyemo, C. Lavelle, E. Li, A.C. Mehinto, S.M. Bay, K.A. Maruya. 2017. Linkage of In Vitro Assay Results With In Vivo Endpoints Final Report - Phase 1 and 2. Technical Report 983. San Francisco Estuary Institute. Richmond, CA.

SCCWRP Staff. 2017. SCCWRP 2017 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2017 Annual Report. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., A. Sengupta, R.D. Mazor, K. McCune, B.P. Bledsoe, K. McCune, S. Adams. 2017. Application of regional flow-ecology relationships to inform watershed management decisions: Application of the ELOHA framework in the San Diego River watershed, California, USA. Ecohydrology 10:1869.

Stein, E.D., J.S. Brown, R.D. Mazor. 2017. Transferability of bioassessment indices among water body types and ecoregions: A California experiment in wetland assessment. Ecological Indicators 81:65-73.

Sarman, E.T., B. Owens, R.F. Ambrose, M.H. Carr, J.C. Field, S.N. Murray, K.J. Nielsen, S.B. Weisberg. 2017. A Framework for Informing Permitting Decisions on Scientific Activities in Marine Protected Areas. Technical Report 991. Ocean Protection Council Science Advisory Team. Sacramento, CA.

Gillett, D.J., L.L. Lovell, K.C. Schiff. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VI. Benthic Infauna. Technical Report 971. Southern California Coastal Water Research Project. Costa Mesa, CA.

Steele, J.A., J.F. Griffith, R. Noble, K.C. Schiff. 2017. Tracking Human Fecal Sources in an Urban Watershed During Wet Weather. Technical Report 1002. Southern California Coastal Water Research Project. Costa Mesa, CA.

Soller, J.A., M. Schoen, J.A. Steele, J.F. Griffith, K.C. Schiff. 2017. Incidence of gastrointestinal illness following wet weather recreational exposures: Harmonization of quantitative microbial risk assessment with an epidemiologic investigation of surfers. Water Research 121:280-289.

Safran, S., S. Baumgarten, E. Beller, J. Crooks, R. Grossinger, J. Lorda, T. Longcore, D. Bram, S. Dark, E.D. Stein, T. McIntosh. 2017. Tijuana River Valley Historical Ecology Investigation. Technical Report 967. San Francisco Estuary Institute. Richmond, CA.

Fong, L.S., E.D. Stein, R.F. Ambrose. 2017. Development of Restoration Performance Curves for Streams in Southern California Using an Integrative Condition Index. Wetlands 37:289-299.

Howard, M.D.A., R.M. Kudela, K. McLaughlin. 2017. New insights into impacts of anthropogenic nutrients on urban ecosystem processes on the Southern California coastal shelf: Introduction and synthesis. Estuarine, Coastal and Shelf Science 186:163-170.

Kudela, R.M., A.J. Lucas, K. Hayashi, M.D.A. Howard, K. McLaughlin. 2017. Death from below: Investigation of inhibitory factors in bloom development during a wastewater effluent diversion. Estuarine, Coastal and Shelf Science 186:209-222.

Bednarsek, N., R.A. Feely, N. Tolimieri, A.J. Hermann, S.A. Siedlecki, G.G. Waldbusser, P. McElhany, S.R. Alin, T. Klinger, B. Moore-Maley, H.O. Portner. 2017. Exposure history determines pteropod vulnerability to ocean acidification along the US West Coast. Scientific Reports 3:4526.

Alonso, M.B., K.A. Maruya, N.G. Dodder, J. Lailson-Brito Jr, A. Azevedo, E. Santos-Neto, J.P.M. Torres, O. Malm, E. Hoh. 2017. Nontargeted Screening of Halogenated Organic Compounds in Bottlenose Dolphins (Tursiops truncatus) from Rio de Janeiro, Brazil. Environmental Science and Technology 51:1176-1185.

Howard, M.D.A., C. Nagoda, R.M. Kudela, K. Hayashi, A. Tatters, D.A. Caron, L. Busse, J.S. Brown, M. Sutula, E.D. Stein. 2017. Microcystin Prevalence throughout Lentic Waterbodies in Coastal Southern California. Toxins 9:231.

Pyne, M.I., D.M. Carlisle, C.P. Konrad, E.D. Stein. 2017. Classification of California streams using combined deductive and inductive approaches: Setting the foundation for analysis of hydrologic alteration. Ecohydrology 10:e1802.

Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Suhatme, B. Seegers, B.H. Jones, A.A.Y. Lie, R. Terrado, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel, G. Robertson. 2017. Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science 186:223-236.

McLaughlin, K., N.P. Nezlin, S.B. Weisberg, A.G. Dickson, J.A. Booth, C.L. Cash, A. Feit, J.R. Gully, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez. 2017. An evaluation of potentiometric pH sensors in coastal monitoring applications. Limnology and Oceanography: Methods 15:679-689.

Mazor, R.D., E.D. Stein. 2017. 2015 Report on the Stormwater Monitoring Coalition Regional Stream Survey. Technical Report 963. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., P.R. Ode, A.C. Rehn, E.D. Stein. 2017. Spatial statistical network models to estimate the spatial representativeness of bioassessment samples. Technical Report 979. Southern California Coastal Water Research Project. Costa Mesa, CA.

Walther, S.M., J.P. Williams, A.M. Latker, D.B. Cadien, D.W. Diehl, K. Wisenbaker, E. Miller, R. Gartman, C. Stransky, K.C. Schiff. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VII. Demersal Fishes and Megabenthic Invertebrates. Technical Report 972. Southern California Coastal Water Research Project. Costa Mesa, CA.

Brooks, B.W., J.M. Lazorchak, M.D.A. Howard, M.V. Johnson, S.L. Morton, D.A.K. Perkins, E.D. Reavie, G.D. Scott, S.A. Smith, J.A. Stevens. 2017. In Some Places, In Some Cases, And At Some Times, Harmful Algal Blooms Are The Greatest Threat To Inland Water Quality. Environmental Toxicology and Chemistry 36:1125-1127.

Zimmer-Faust, A.G., V. Thulsiraj, C. Marambio-Jones, Y. Cao, J.F. Griffith, P.A. Holden, J.A. Jay. 2017. Effect of freshwater sediment characteristics on the persistence of fecal indicator bacteria and genetic markers within a Southern California watershed. Water Research 119:1-11.

Steinberg, S.J., S.L. Moore. 2017. San Diego Bay Fish Consumption Study. Technical Report 976. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lin, K., W. Lao, Z. Lu, F. Jia, K.A. Maruya, J. Gan. 2017. Measuring freely dissolved DDT and metabolites in seawater using solid-phase microextraction with performance reference compounds. Science of the Total Environment 599-600:364-371.

Nezlin, N.P., K. McLaughlin, A.T. Booth, C.L. Cash, D.W. Diehl, K. Davis, A. Feit, R. Goericke, J.R. Gully, M.D.A. Howard, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez, L.i.b.e. Washburn, S.B. Weisberg. 2017. Spatial and Temporal Patterns of Chlorophyll Concentration in the Southern California Bight. Technical Report 998. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., A. Dickson, S.B. Weisberg, K. Coale, V. Elrod, C. Hunter, K.S. Johnson, S. Kram, R. Kudela, T. Martz, K. Negrey, U. Passow, F. Shaughnessy, J.E. Smith, D. Tadesse, L. Washburn, K.R. Weis. 2017. An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science 12:11-18.

Sutula, M., D. Senn. 2017. Scientific Basis to Assess the Effects of Nutrients on San Francisco Bay Beneficial Uses. Technical Report 864. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sutula, M., R. Kudela, J.D. Hagy III, L.W. Harding Jr, D. Senn, J.E. Cloern, S. Bricker, G.M. Berg, M. Beck. 2017. Novel analyses of long-term data provide a scientific basis for chlorophyll-a thresholds in San Francisco Bay. Estuarine, Coastal and Shelf Science 197:107-118.

Kudela, R.M., M.D.A. Howard, K. Hayashi, C. Beck. 2017. Evaluation of uptake kinetics during a wastewater diversion into nearshore coastal waters in southern California. Estuarine, Coastal and Shelf Science 186:237-249.

Cao, Y., M. Sivaganesan, C.A. Kelty, D. Wang, A. Boehm, J.F. Griffith, S.B. Weisberg, O.C. Shanks. 2017. A human fecal contamination score for ranking recreational sites using the HF183/BacR287 quantitative real-time PCR method. Water Research 128:148-156.

Mazdiyasni, O., A. AghaKouchak, S.J. Davis, S. Madadgar, A. Mehran, E. Ragno, M. Sadegh, A. Sengupta, S. Ghosh, C.T. Dhanya, M. Niknejad. 2017. Increasing probability of mortality during Indian heat waves. Science Advances 3:e1700066.

Chen, C., M.O. Gribble, J. Bartroff, S.M. Bay, L. Goldstein. 2017. The Sequential Probability Ratio Test: An efficient alternative to exact binomial testing for Clean Water Act 303(d) evaluation. Journal of Environmental Management 192:89-93.

Benjamin-Chung, J., B.F. Arnold, T.J. Wade, K.C. Schiff, J.F. Griffith, A.P. Dufour, S.B. Weisberg, J.M. Colford Jr. 2017. Coliphages and gastrointestinal illness in recreational waters: pooled analysis of six coastal beach cohorts. Epidemiology 28:644-652.

Beck, M., R.D. Mazor, E.D. Stein, R. Maas, D.D. Mello, D. Bram. 2017. Mapping of Non-Perennial and Ephemeral Streams in the Santa Ana Region. Technical Report 1012. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., K.B. Lunde, J.S. Brown. 2017. Assessment of the condition of San Francisco Bay Area depressional wetlands. Technical Report 940. Surface Water Ambient Monitoring Program. Sacramento, CA.

Bay, S.M., A.N. Parks, A.R. Melwani, B.K. Greenfield. 2017. Development of a Sediment Quality Assessment Framework for Human Health Effects. Technical Report 1000. Southern California Coastal Water Research Project. Costa Mesa, CA.

Martinovic-Weigelt, D., A.C. Mehinto, G.T. Ankley, J.P. Berninger, T.W. Collette, J.M. Davis, N.D. Denslow, E.J. Durhan, E. Eid, D.R. Ekman, K.M. Jensen, M.D. Kahl, C.A. LaLone, Q. Teng, D.L. Villeneuve. 2017. Derivation and Evaluation of Putative Adverse Outcome Pathways for the Effects of Cyclooxygenase Inhibitors on Reproductive Processes in Female Fish. Toxicological Sciences 156:344-61.

Bednarsek, N., T. Klinger, C.J. Harvey, S.B. Weisberg, R.M. McCabe, R.A. Feely, J. Newton, N. Tolimieri. 2017. New ocean, new needs: Application of pteropod shell dissolution as a biological indicator for marine resource management. Ecological Indicators 76:240-244.

Phelps, L., J. Adelson, S. Arms, D. Speis. 2017. Progress Assessment and Final Recommendations by the Expert Review Panel for the State of California's Environmental Laboratory Accreditation Program: Year Two Final Report. Technical Report 977. Southern California Coastal Water Research Project. Costa Mesa, CA.

Arnold, B.F., K.C. Schiff, A. Ercumen, J. Benjamin-Chung, J.A. Steele, J.F. Griffith, S.J. Steinberg, P.D. Smith, C.D. McGee, R. Wilson, C. Nelsen, S.B. Weisberg, J.M. Colford Jr. 2017. Acute Illness Among Surfers After Exposure to Seawater in Dry- and Wet-Weather Conditions. American Journal of Epidemiology 186:866-875.

Cao, Y., G.L. Andersen, A.A. Boehm, P. Holden, J.A. Jay, J.F. Griffith. 2017. Determination of DNA-based Fecal Marker Aging Characteristics for Use in Quantitative Microbial Source Tracking. Technical Report 978. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tatters, A.O., M.D.A. Howard, C. Nagoda, L. Busse, A.G. Gellene, D.A. Caron. 2017. Multiple Stressors at the Land-Sea Interface: Cyanotoxins at the Land-Sea Interface in the Southern California Bight. Toxins 9:95.

Stein, E.D., R.D. Mazor, A. Sengupta, K. McCune, B. Bledsoe, S. Adams, S. Eberhart, M. Pyne, P. Ode, A. Rehn. 2017. Development of Recommended Flow Targets to Support Biological Integrity Based on Regional Flow-ecology Relationships for Benthic Macroinvertebrates in Southern California Streams. Technical Report 974. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., M.R. Raith, P.D. Smith, J.F. Griffith, S.B. Weisberg, A. Schriewer, A. Sheldon, C. Crompton, G.G. Amenu, J. Gregory, J. Guzman, K.D. Goodwin, L. Othman, M. Manasjan, S. Choi, S. Rapaport, S. Steele, T. Nguyen, X. Yu. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume IX. Shoreline Microbiology. Technical Report 1005. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., M.R. Raith, P.D. Smith, J.F. Griffith, S.B. Weisberg, A. Schriewer, A. Sheldon, C. Crompton, G.G. Amenu, J. Gregory, J. Guzman, K.D. Goodwin, L. Othman, M. Manasjan, S. Choi, S. Rapoport, S. Steele, T. Nguyen, X. Yu. 2017. Regional Assessment of Human Fecal Contamination in Southern California Coastal Drainages. International Journal of Environmental Research and Public Health 14:874.

Chiu, M.C., C. Leigh, R.D. Mazor, N. Cid, V. Resh. 2017. Anthropogenic Threats to Intermittent Rivers and Ephemeral Streams. in: T. Datry, N. Bonada, A. Boulton (eds.), Intermittent Rivers and Ephemeral Streams: Ecology and Management pp. 433-454. Academic Press. London, UK.

DeFlorio-Barker, S., B.F. Arnold, E.A. Sams, A.P. Dufour, J.M. Colford Jr, S.B. Weisberg, K.C. Schiff, T.J. Wade. 2017. Child environmental exposures to water and sand at the beach: Findings from studies of over 68,000 subjects at 12 beaches. Journal of Exposure Science and Environmental Epidemiology DOI:10.1038/jes.2017.23.

Mazor, R.D., J.S. Brown, E.D. Stein, J.R. Olson, M.D. Robinson, T. Clark. 2017. Assessment of Episodic Streams in the San Diego Region. Technical Report 1011. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mehinto, A.C., D.R. VanDervort, W. Lao, G. He, M.S. Denison, S.M. Vliet, D.C. Volz, R.D. Mazor, K.A. Maruya. 2017. High throughput in vitro and in vivo screening of inland waters of Southern California. Environmental Science: Processes and Impacts 19:1142-1149.

McLaughlin, K., N.P. Nezlin, M.D.A. Howard, C.D.A. Beck, R.I.M. Kudela, M.J. Mengel, G.L. Robertson. 2017. Rapid nitrification of wastewater ammonium near coastal ocean outfalls, Southern California, USA. Estuarine, Coastal and Shelf Science 186:263-375.

Bight '13 Contaminant Impact Assessment Planning Committee. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VIII. Contaminant Impact Assessment Synthesis Report. Technical Report 973. Southern California Coastal Water Research Project. Costa Mesa, CA.

Southern California Bight 2013 Regional Monitoring Program Contaminant Impact Assessment Planning Committee. 2017. Southern California Bight 2013 Regional Monitoring Program Contaminant Impact Assessment Synthesis Report Executive Summary. Technical Report 970. Southern California Coastal Water Research Project. Costa Mesa, CA.

SCCWRP Staff. 2016. SCCWRP 2016 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2016 Annual Report. Southern California Coastal Water Research Project. Costa Mesa, CA.

Davis, J.A., J.R.M. Ross, S. Bezalel, L. Sim, A. Bonnema, G. Ichikawa, W.A. Heim, K.C. Schiff, C.A. Eagles-Smith, J.T. Ackerman. 2016. Hg concentrations in fish from coastal waters of California and Western North America. Science of the Total Environment 568:1146-1156.

Clatterbuck, C.A., R.A. Lewison, N. Dodder, C. Zeeman, K.C. Schiff. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume V. Contaminant Bioaccumulation in Seabird Eggs of the Southern California Bight. Technical Report 944. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Stein, E.D., A. Sengupta, R.D. Mazor, K. McCune. 2016. Application of Regional Flow-ecology to Inform Management Decision in the San Diego River Watershed. Technical Report 948. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Brooks, B.W., J.M. Lazorchak, M.D.A. Howard, M.V.V. Johnson, S.L. Morton, D.A.K. Perkins, E.D. Reavie, G.I. Scott, S.A. Smith, J.A. Steevens. 2016. Are Harmful Algal Blooms Becoming the Greatest Inland Water Quality Threat to Public Health and Aquatic Ecosystems. Environmental Toxicology and Chemistry 35:6-13.

Schiff, K.C., J.F. Griffith, J.A. Steele, B. Arnold, A. Ercumen, J. Benjamin-Chung, J.M. Colford Jr, J. Soller, R. Wilson, C. McGee. 2016. The Surfer Health Study: A Three-Year Study Examining Illness Rates Associated with Surfing During Wet Weather. Technical Report 943. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Sato, K.N., L.A. Levin, K.C. Schiff. 2016. Habitat compression and expansion of sea urchins in response to changing climate conditions on the California continental shelf and slope (1994-2013). Deep-Sea Research II 137:377-389.

Nezlin, N.P., J.A.T. Booth, C. Beegan, C.L. Cash, J.R. Gully, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, S.B. Weisberg. 2016. Assessment of wastewater impact on dissolved oxygen around southern California's submerged ocean outfalls. Regional Studies in Marine Science 7:177-184.

Maruya, K.A., N.G. Dodder, A. Sengupta, D.J. Smith, J.M. Lyons, A.T. Heil, J.E. Drewes. 2016. Multi-media screening of contaminants of emerging concern (CECs) in coastal urban watersheds in southern California (USA). Environmental Toxicology and Chemistry 35:1986-1994.

Mackintosh, S.A., N.G. Dodder, N.J. Shaul, L.I. Aluwihare, K.A. Maruya, S.J. Chivers, K. Danil, D.W. Weller, E. Hoh. 2016. Newly Identified DDT-Related Compounds Accumulating in Southern California Bottlenose Dolphins. Environmental Science and Technology 50:12129-12137.

Brown, J.S., E.D. Stein, C. Solek, A.E. Fetscher. 2016. Assessment of the Condition of Southern California Depressional Wetlands: Application of Macroinvertebrate, Diatom and Overall Condition Indices for Assessing Southern California Depressional Wetlands. Technical Report 921. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Cao, Y., J.F. Griffith, S.B. Weisberg. 2016. The Next-Generation PCR-Based Quantification Method for Ambient Waters: Digital PCR. in: S.J. Bourlat (ed.), Marine Genomics: Methods and Protocols pp. 113-130. Springer. New York, NY.

Schiff, K.C., P.R. Trowbridge, E.T. Sherwood, P. Tango, R.A. Batiuk. 2016. Regional monitoring programs in the United States: Synthesis of four case studies from Pacific, Atlantic, and Gulf Coasts. Regional Studies in Marine Science 4:A1-A7.

Saintilan, N., K. Rogers, C. Toms, E.D. Stein, D. Jacobs. 2016. Intermittent Estuaries: Linking Hydro-geomorphic Context to Climate Change Resilience. Journal of Coastal Research 75:133-137.

Sutula, M., J. Butcher, C. Boschen, M. Molina. 2016. Application of Watershed Loading and Estuary Water Quality Models to Inform Nutrient Management in the Santa Margarita River Watershed. Technical Report 933. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Moore, S.L., M. Sutula, T.V. Bitner, G. Lattin, K.C. Schiff. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume III. Trash and Marine Debris. Technical Report 928. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Anderson-Abbs, B., M.D.A. Howard, K. Taberski, K. Worcester. 2016. California Freshwater Harmful Algal Blooms Assessment and Support Strategy. Technical Report 925. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Graham, E.B., J.E. Knelman, A. Schindlbacher, S. Siciliano, M. Breulmann, A. Yannarell, J.M. Beman, G. Abell, L. Philippot, J. Prosser, A. Foulquier, J.C. Yuste, H.C. Glanville, D.L. Jones, R. Angel, J. Salminen, R.J. Newton, H. Burgmann, L.J. Ingram, U. Hamer, H.M.P. Siljanen, K. Peltoniemi, K. Potthast, L. Baneras, M. Hartmann, S. Banerjee, R. Yu, G. Nogaro, A. Richter, M. Koranda, S.C. Castle, M. Goberna, B. Song, A. Chatterjee, O.C. Nunes, A.R. Lopes, Y. Cao, A. Kaisermann, S. Hallin, M.S. Strickland, J. Garcia-Pausas, J. Barba, H. Kang, K. Isobe, S. Papaspyrou, R. Pastorelli, A. Lagomarsino, E.S. Lindstrom, N. Basiliko, D.R. Nemergut. 2016. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?. Frontiers in Microbiology 7:214.

Crago, J., E.G. Xu, A. Kupsco, F. Jia, A.C. Mehinto, W. Lao, K.A. Maruya, J. Gan, D. Schlenk. 2016. Trophic transfer and effects of DDT in male hornyhead turbot (Pleuronichthys verticalis) from Palos Verdes Superfund site, CA (USA) and comparisons to field monitoring. Environmental Pollution 213:940-948.

Wu, J., Y. Cao, B. Young, Y. Yuen, S. Jiang, D. Melendez, J.F. Griffith, J.R. Stewart. 2016. Decay of Coliphages in Sewage-Contaminated Freshwater: Uncertainty and Seasonal Effects. Environmental Science and Technology 50:11593-11601.

Ferguson, D.M., G.N. Talavera, L.A.R. Hernandez, S.B. Weisberg, R.F. Ambrose, J.A. Jay. 2016. Virulence Genes among Enterococcus faecalis and Enterococcus faecium Isolated from Coastal Beaches and Human and Nonhuman Sources in Southern California and Puerto Rico. Journal of Pathogens 2016:1-7.

Ferguson, D.M., S.B. Weisberg, C. Hagedorn, K. De Leon, V. Mofidi, J. Wolfe, M. Zimmerman, J.A. Jay. 2016. Enterococcus growth on eelgrass (Zostera marina); implications for water quality. FEMS Microbiology Ecology 92:1-7.

Aminzadeh, S., M. Armsby, N. Bednarsek, J. Bishop, A. Boehm, C. Braby, F. Chan, R. Dunbar, R. Feely, B. Gaylord, L. Jewett, C. Krembs, K. Kroeker, R. Labiosa, T. Maloney, J. Phillips, B. Rappoli, M. Sakashita, D. Sivas, G. Somero, M. Sutula, D. Thomas, G. Waldbusser, S.B. Weisberg. 2016. Ocean Acidification: Setting Water Quality Goals. Technical Report 961. Stanford University. Stanford, CA.

Howard, M.D.A., B. Fetscher, C. Nagoda. 2016. The Prevalence of Cyanotoxins in Southern California Waterbodies Based on Screen Assessments and Regional Monitoring Programs. Technical Report 930. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Lao, W., Y. Hong, D. Tsukada, K.A. Maruya, J. Gan. 2016. A New Film-Based Passive Sampler for Moderately Hydrophobic Organic Compounds. Environmental Science and Technology 50:13470-13476.

Vidal-Dorsch, D.E., S.M. Bay, S.L. Moore, B. Layton, A.C. Mehinto, C.D. Vulpe, M. Brown-Augustine, A. Loguinov, H. Poynton, N. Garcia-Reyero, E.J. Perkins, L. Escalon, N.D. Denslow, C.R. Colli-Dula, T. Doan, S. Shukradas, J. Bruno, L. Brown, G. Van Agglen, P. Jackman, M. Bauer. 2016. Ecotoxicogenomics: Microarray interlaboratory comparability. Chemosphere 144:193-200.

Weisberg, S.B., N. Bednarsek, R.A. Feely, F. Chan, A.B. Boehm, M. Sutula, J.L. Ruesink, B. Hales, J.L. Largier, J.A. Newton. 2016. Water quality criteria for an acidifying ocean: Challenges and opportunities for improvement. Ocean and Coastal Management 126:31-41.

Cloern, J.E., P.J. Barnard, E. Beller, J.C. Callaway, L. Grenier, E.D. Grosholz, R. Grossinger, K. Hieb, J.T. Hollibaugh, N. Knowles, M. Sutula, S. Veloz, K. Wasson, A. Whipple. 2016. Estuaries: Life on the edge. in: H. Mooney, E. Zavaleta (eds.), Ecosystems of California pp. 133-137. University of California Press. Berkeley, CA.

Sutula, M., D.J. Gillett, A. Jones. 2016. Status of Eutrophication in San Elijo Lagoon and its Relevance for Restoration. Technical Report 938. Southern California Coastal Water Research Project. Costa Mesa, CA.

Haugland, R.A., S. Siefring, M. Varma, K.H. Oshima, M. Sivaganesan, Y. Cao, M.R. Raith, J.F. Griffith, S.B. Weisberg, R.T. Noble, A.D. Blackwood, J. Kinzelman, T. Anan'eva, R.N. Bushon, E.A. Stelzer, V.J. Harwood, K.V. Gordon, C. Sinigalliano. 2016. Multi-laboratory survey of qPCR enterococci analysis method performance in U.S. coastal and inland surface waters. Journal of Microbiological Methods 123:114-125.

Arnold, B.F., T.J. Wade, J. Benjamin-Chung, K.C. Schiff, J.F. Griffith, A.P. Dufour, S.B. Weisberg, J.M. Colford Jr. 2016. Acute Gastroenteritis and Recreational Water: Highest Burden Among Young US Children. American Journal of Public Health 9:1690-1697.

Griffith, J.F., S.B. Weisberg, B.F. Arnold, Y. Cao, K.C. Schiff, J.M. Colford Jr. 2016. Epidemiologic evaluation of multiple alternate microbial water quality monitoring indicators at three California beaches. Water Research 94:371-381.

Wang, D., K.M. Yamahara, Y. Cao, A.B. Boehm. 2016. Absolute Quantification of Enterococcal 23S rRNA Gene Using Digital PCR. Environmental Science and Technology 50:399-408.

Maraccini, P.A., M.C.M. Mattioli, L.M. Sassoubre, Y. Cao, J.F. Griffith, J.S. Ervin, L.C. Van De Werfhorst, A.B. Boehm. 2016. Solar Inactivation of Enterococci and Escherichia coli in Natural Waters: Effects of Water Absorbance and Depth. Environmental Science and Technology 50:5068-5076.

Peng, J., Y. Cao, M.A. Rippy, A.R.M.N. Afrooz, S.B. Grant. 2016. Indicator and Pathogen Removal by Low Impact Development Best Management Practices. Water 8:600.

Dodder, N., K.C. Schiff, A. Latker, C.L. Tang. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume IV. Sediment Chemistry. Technical Report 922. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Boehm, A., F. Chan, J. Barth, E. Chornesky, A. Dickson, R. Feely, B. Hales, T. Hill, G. Hofmann, D. Ianson, T. Klinger, J. Largier, J. Newton, T. Pedersen, G. Somero, M. Sutula, W. Wakefield, G. Waldbusser, S.B. Weisberg, E. Whiteman. 2016. The West Coast Ocean Acidification and Hypoxia Science Panel: Major Findings, Recommendations, and Actions. Technical Report 926. California Ocean Science Trust. Oakland, CA.

Schiff, K.C., D.J. Greenstein. 2016. Stormwater Monitoring Coalition Toxicity Testing Laboratory Guidance Document. Technical Report 956. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., L.L. Tiefenthaler, S.M. Bay, D.J. Greenstein. 2016. Effects of Rainfall Intensity and Duration on the First Flush from Parking Lots. Water 8:320.

Scott, G.I., D.E. Porter, R.S. Norman, C.H. Scott, M.I. Uyaguari-Diaz, K.A. Maruya, S.B. Weisberg, M.H. Fulton, E.F. Wirth, J. Moore, P.L. Pennington, D. Schlenk, G.P. Cobb, N.D. Denslow. 2016. Antibiotics as CECs: An Overview of the Hazards Posed by Antibiotics and Antibiotic Resistance. Frontiers in Marine Science 3:1-15.

Bay, S.M., D.J. Greenstein, A.N. Parks, C.Q.T. Zeeman. 2016. Assessment of Bioaccumulation in San Diego Bay. Technical Report 953. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Ode, P.R., A.E. Fetscher, L.B. Busse. 2016. Standard Operating Procedures (SOP) for the Collection of Field Data for Bioassessments of California Wadeable Streams: Benthic Macroinvertebrates, Algae, and Physical Habitat. Technical Report 835. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Cao, Y., M.R. Raith, J.F. Griffith. 2016. A Duplex Digital PCR Assay for Simultaneous Quantification of the Enterococcus spp. and the Human Fecal-associated HF183 Marker in Waters. Journal of Visualized Experiments 109:e53611.

Tiefenthaler, L.L., M. Sutula, J.F. Griffith, M.R. Raith. 2016. Microbiological Water Quality at Reference Beaches and an Adjoining Estuary in Southern California during a Prolonged Drought. Technical Report 936. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Denslow, N.D., K.A. Maruya, F.D.L. Leusch. 2016. Bioanalytical Approaches in Assessing Transformation Products. in: J.E. Drewes, T. Letzel (eds.), Assessing Transformation Products of Chemicals by Non-Target and Suspect Screening - Strategies and Workflows, Volume 2 pp. 73-87. American Chemical Society. Washington, DC.

Brooks, R.P., D. Faber-Langendoen, G. Serenbetz, J. Rocchio, E.D. Stein, K. Walz. 2016. Towards Creating a National Reference Wetlands Registry. National Wetlands Newsletter 38:7-11.

Schiff, K.C., J.S. Brown, S. Trump, D. Hardin. 2016. Near-Coastal Water Quality at Reference Sites Following Storm Events. Marine Pollution Bulletin 103:294-300.

Mehinto, A.C., B.S. Jayasinghe, D.R. Vandervort, N.D. Denslow, K.A. Maruya. 2016. Screening for Endocrine Activity in Water Using Commercially-available In Vitro Transactivation Bioassays. Journal of Visualized Experiments 118:e54725.

Pondella II, D.J., K.C. Schiff, R.A. Schaffner, A. Zellmer, J. Coates. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume II. Rocky Reefs. Technical Report 932. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Ode, P.R., A.C. Rehn, R.D. Mazor, K.C. Schiff, E.D. Stein, J.T. May, L.R. Brown, D.B. Herbst, D.J. Gillett, K. Lunde, C.P. Hawkins. 2016. Evaluating the adequacy of a reference-site pool for ecological assessments in environmentally complex regions. Freshwater Science 35:237-248.

Mazor, R.D., A.C. Rehn, P.R. Ode, M. Engeln, K.C. Schiff, E.D. Stein, D.J. Gillett, D.B. Herbst, C.P. Hawkins. 2016. Bioassessment in complex environments: designing an index for consistent meaning in different settings. Freshwater Science 35:249-271.

Alonso, M.B., J. Lailson-Brito, A. Azevedo, E. Santos-Neto, J.P.M. Torres, O. Malm, E. Hoh, N. Dodder, K.A. Maruya. 2015. A Comprehensive Non-Targeted Screening of Halogenated Organic Compounds in Dolphins from Brazil. Organohalogen Compounds 77:337-340.

Dodder, N.G., A.C. Mehinto, K.A. Maruya. 2015. Monitoring of Constituents of Emerging Concern (CECs) in California's Aquatic Ecosystems - Pilot Study Design and QA/QC Guidance. Technical Report 854. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Johnston, K., I. Medel, S. Anderson, E.D. Stein, C. Whitcraft, J. Crooks. 2015. Estuarine Wetland Monitoring Manual: Application and Assessment of USEPA Three-Tiered Monitoring Strategy to Southern California Coastal Wetlands. Technical Report 880. The Bay Foundation. Los Angeles, CA.

Bay, S.M., R. Hoenicke, K.A. Maruya. 2015. Water Resources: Contaminants of Emerging Concern. Urban Coast 5:35-40.

SCCWRP Staff. 2015. SCCWRP 2015 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2015 Annual Report. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D. 2015. Bioassessment of Perennial Streams in Southern California: A Report on the First Five Years of the Stormwater Monitoring Coalition's Regional Stream Survey. Technical Report 844. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Mazor, R.D. 2015. Bioassessment Survey of the Stormwater Monitoring Coalition: Workplan for Years 2015 through 2019 Version 1.0. Technical Report 849. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Pondella II, D.J., J.P. Williams, J. Claisse, R.A. Schaffner, K. Ritter, K.C. Schiff. 2015. The Physical Characteristics of Nearshore Rocky Reefs in The Southern California Bight. Bulletin of the Southern California Academy of Sciences 114:105-122.

Gillett, D.J., S.B. Weisberg, T. Grayson, A. Hamilton, V. Hansen, E.W. Leppo, M.C. Pelletier, A. Borja, D. Cadien, D. Dauer, R. Diaz, M. Dutch, J.L. Hyland, M. Kellogg, P.F. Larsen, J.S. Levinton, R. Llanso, L.L. Lovell, P.A. Montagna, D. Pasko, C.A. Phillips, C. Rakocinski, J.A. Ranasinghe, D.M. Sanger, H. Teixeira, R.F. Van Dolah, R.G. Velarde, K.I. Welch. 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators 50:99-107.

Maruya, K.A., W. Lao, D. Tsukada, D.W. Diehl. 2015. A passive sampler based on solid phase microextraction (SPME) for sediment-associated organic pollutants: Comparing freely-dissolved concentration with bioaccumulation. Chemosphere 137:192-197.

May, J.T., L.R. Brown, A.C. Rehn, I.R. Waite, P.R. Ode, R.D. Mazor, K.C. Schiff. 2015. Correspondence of biological condition models of California streams at statewide and regional scales. Environmental Monitoring and Assessment 187:4086.

Maruya, K.A., N.G. Dodder, A.C. Mehinto, N.D. Denslow, D. Schlenk, S.A. Snyder, S.B. Weisberg. 2015. A Tiered, Integrated Biological and Chemical Monitoring Framework for Contaminants of Emerging Concern in Aquatic Ecosystems. Integrated Environmental Assessment and Management 12:540-547.

Love, M.S., J.K. Passarelli, C. Okamoto, D.W. Diehl. 2015. The Bigeye Scad, Selar crumenophthalmus (Bloch, 1793) (Family Carangidae), New to the California Marine Fauna, with a List to and Keys for All California Carangids. Bulletin of the Southern California Academy of Sciences 114:141-148.

Cox, H., E.D. Stein, L. Protopapadakis, M. Dojiri. 2015. Water Resources: Water Supply and Use from a Water Quality Perspective. Urban Coast 5:3-10.

Magrann, T., M.D.A. Howard, M. Sutula, D.S. Boskovic, W.K. Hayes, S.G. Dunbar. 2015. Screening Assessment of Cyanobacteria and Cyanotoxins in Southern California Lentic Habitats. Macrothink Institute Environmental Management and Sustainable Development 4:91-111.

Stein, E.D. 2015. Habitat Highlights: Regional Stream Monitoring in Southern California. Urban Coast 5:128-129.

Millow, C.J., S.A. Mackintos, R.L. Lewison, N.G. Dodder, E. Hoh. 2015. Identifying Bioaccumulative Halogenated Organic Compounds Using a Nontargeted Analytical Approach: Seabirds as Sentinels. PLoS ONE 10:e0127205.

McLaughlin, K., S.B. Weisberg, A.G. Dickson, G.E. Hofmann, J.A. Newton, D. Aseltine-Neilson, A. Barton, S. Cudd, R.A. Feely, I.W. Jefferds, E.B. Jewett, T. King, C.J. Langdon, S. McAfee, D. Pleschner-Steele, B. Steele. 2015. Core principles of the California Current Acidification Network: Linking chemistry, physics, and ecological effects. Oceanography 28:160-169.

Shaul, N.J., N.G. Dodder, L.I. Aluwihare, S.A. Mackintosh, K.A. Maruya, S.J. Chivers, K. Danil, D.W. Weller, E. Hoh. 2015. Nontargeted Biomonitoring of Halogenated Organic Compounds in Two Ecotypes of Bottlenose Dolphins (Tursiops truncatus) from the Southern California Bight. Environmental Science and Technology 49:1329-1338.

Compton Renick, V., K. Weinersmith, D.E. Vidal-Dorsch, T.W. Anderson. 2015. Effects of a pesticide and a parasite on neurological, endocrine, and behavioral responses of an estuarine fish. Aquatic Toxicology 170:335-343.

Dodder, N., K.C. Schiff. 2015. Areas of Special Biological Significance: Northern California Bioaccumulation Monitoring. Technical Report 857. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Feldman, D.L., A. Sengupta, L. Stuvick, E.D. Stein, V. Pettigrove, M. Arora. 2015. Governance issues in developing and implementing offsets for water management benefits: Can preliminary evaluation guide implementation effectiveness?. WIREs Water 2:121-130.

Cooley, S.R., E.B. Jewett, J. Reichert, L. Robbins, G. Shrestha, D. Wieczorek, S.B. Weisberg. 2015. Getting ocean acidification on decision makers' to-do lists: Dissecting the process through case studies. Oceanography 28:198-211.

Martz, T., K. McLaughlin, S.B. Weisberg. 2015. Best Practices for autonomous measurement of seawater pH with the Honeywell Durafet pH sensor. Technical Report 861. California Current Acidification Network. Santa Barbara, CA.

Fetscher, A.E., E.D. Stein, M.D.A. Howard. 2015. Looking Ahead: Preliminary Examination of Stream Cyanotoxins in Santa Monica Bay and California Watersheds. Urban Coast 5:198-200.

Ambrose, R.F., J.H. Dorsey, K. Johnston, E.D. Stein. 2015. Habitat Conditions: Coastal Wetlands. Urban Coast 5:59-68.

Dagit, R., F. Federico, L. Kats, E.D. Stein. 2015. Habitat Conditions: Freshwater Aquatic and Riparian Habitats. Urban Coast 5:48-58.

Murray, S.N., S.B. Weisberg, P.T. Raimondi, R.F. Ambrose, C.A. Bell, C.A. Blanchette, J.L. Burnaford, M.N. Dethier, J.M. Engle, M.S. Foster, C.M. Miner, K.J. Nielsen, J.S. Pearse, D.V. Richards, J.R. Smith. 2015. Evaluating ecological states of rocky intertidal communities: A Best Professional Judgment exercise. Ecological Indicators 60:802-814.

Schaffner, R.A., S.J. Steinberg, K.C. Schiff. 2015. A GIS Tool to Compute a Pollutant Exposure Index for the Southern California Bight. in: D.J. Wright (ed.), Earth Solutions, Ocean Solutions pp. 109-133. Esri Press. Redlands, CA.

Boehm, A.B., M.Z. Jacobson, M.J. O'Donnell, M. Sutula, W.W. Wakefield, S.B. Weisberg, E. Whiteman. 2015. Ocean acidification science needs for natural resource managers of the North American west coast. Oceanography 28:170-181.

Greenfield, B.K., A.R. Melwani, S.M. Bay. 2015. A tiered assessment framework to evaluate human health risk of contaminated sediment. Integrated Environmental Assessment and Management 11:459-473.

Bay, S.M., L. Wiborg, D.J. Greenstein, N. Haring, C. Pottios, C. Stransky, K.C. Schiff. 2015. Southern California Bight 2013 Regional Monitoring Program. Volume I - Sediment Toxicity Report. Technical Report 899. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Raimondi, P.T., M. George, M. Redfield, S. Worden, R. Williams, N. Fletcher, L. Anderson, D. Lohse, R. Gaddam. 2015. Characterization of the rocky intertidal ecological communities associated with Northern California Areas of Special Biological Significance. Technical Report 855. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Judd, N., Y. Lowney, P. Anderson, S. Baird, S.M. Bay, J. Breidt, M. Buonanduci, Z. Dong, D. Essig, M.R. Garry, R.C. Jim, G. Kirkwood, S.L. Moore, C. Niemi, R. O'Rourke, B. Ruffle, L.A. Schaider, D.E. Vidal-Dorsch. 2015. Fish Consumption as a Driver of Risk-Management Decisions and Human Health-Based Water Quality Criteria. Environmental Toxicology and Chemistry 34:2427-2436.

Bay, S.M. 2015. Water Resources: Toxics TMDLs. Urban Coast 5:22-28.

Fetscher, A.E., M.D.A. Howard, R. Stancheva, R.M. Kudela, E.D. Stein, M. Sutula, L.B. Busse, R.G. Sheath. 2015. Wadeable streams as widespread sources of benthic cyanotoxins in California, USA. Harmful Algae 49:105-116.

Schiff, K.C., D.J. Greenstein, N. Dodder, D.J. Gillett. 2015. Southern California Bight regional monitoring. Regional Studies in Marine Science 4:34-46.

Seegers, B.N., J.M. Birch, R. Marin III, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography 60:754-764.

Rehn, A.C., R.D. Mazor, P.R. Ode. 2015. The California Stream Condition Index (CSCI): A New Statewide Biological Scoring Tool for Assessing the Health of Freshwater Streams. Technical Report 883. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Stein, E.D., P. Pendleton, K. O'Connor, C. Endris, J. Adalaars, M. Salomon, K. Cayce, A. Jong. 2015. Demonstrating the California Wetland Status and Trends Program: A Probabilistic Approach for Estimating Statewide Aquatic Resource Extent, Distribution and Change over Time. Technical Report 859. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Boyer, K., M. Sutula. 2015. Factors Controlling Submersed and Floating Macrophytes in the Sacramento-San Joaquin Delta. Technical Report 870. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Mehinto, A.C., A. Jia, S.A. Snyder, B. Sumith Jayasinghe, N.D. Denslow, J. Crago, D. Schlenk, C. Menzie, S.D. Westerheide, F.D.L. Leusch, K.A. Maruya. 2015. Interlaboratory comparison of in vitro bioassays for screening of endocrine disrupting chemicals in recycled water. Water Research 83:303-309.

Berg, M., M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria With Special Emphasis on the Sacramento-San Joaquin Delta. Technical Report 869. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California. Technical Report 750. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix A). Technical Report 750.A. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix B). Technical Report 750.B. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix C). Technical Report 750.C. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams. Technical Report 862. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix D). Technical Report 750.D. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix A). Technical Report 862.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix B). Technical Report 862.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix C). Technical Report 862.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix D). Technical Report 862.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fetscher, A.E., K. Lunde, E.D. Stein, J.S. Brown. 2015. Standard Operating Procedures (SOP) for Collection of Macroinvertebrates, Benthic Algae, and Associated Physical Habitat Data in California Depressional Wetlands. Technical Report 832. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Barton, A., G.G. Waldbusser, R.A. Feely, S.B. Weisberg, J.A. Newton, B. Hales, S. Cudd, B. Eudeline, C.J. Langdon, I. Jefferds, T. King, A. Suhrbier, K. McLaughlin. 2015. Impacts of coastal acidification on the Pacific Northwest shellfish industry and adaptation strategies implemented in response. Oceanography 28:146-159.

Stein, E.D., L.G. Lackey, J.S. Brown. 2015. How accurate are probability-based estimates of wetland extent? Results of a California validation study. Wetlands Ecology and Management 24:347-356.

Schiff, K.C., J.S. Brown. 2015. North Coast Areas of Special Biological Significance Regional Monitoring Program: First Year Results. Technical Report 856. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Von Bitner, T., E.D. Stein, L. Protopapadakis, K. Thorsen. 2015. Water Resources: Trash and Debris. Urban Coast 5:29-34.

Schiff, K.C., J.S. Brown. 2015. Proposition 84 Grant Evaluation Report: Assessing Pollutant Reductions to Areas of Biological Significance. Technical Report 858. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., J.S. Brown. 2015. South Coast Areas of Special Biological Significance Regional Monitoring Program Year 2 Results. Technical Report 852. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Azimi-Gaylon, S., S. Fong, P. Goodwin, T. Hale, G. Isaac, A. Osti, F. Shilling, T. Slawecki, S.J. Steinberg, M. Tompkins, L. Videmsky. 2015. Enhancing the Vision for Managing California's Environmental Information. Technical Report 884. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Phelps, L., J. Adelson, S. Arms, M. Miller, D. Speis. 2015. Findings and Recommendations by the Expert Review Panel for the State of California's Environmental Laboratory Accreditation Program Year One Final Report. Technical Report 887. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., B. Luk, D. Gregorio. 2015. Impact of Stormwater Discharges on Water Quality in Coastal Marine Protected Areas. Water Environment Research 87:772-782.

Hallenbeck, T., T. Welch, S.J. Steinberg, A. Lanier. 2015. Extending Esri Geoportal Server to Meet the Needs of the West Coast Ocean Data Network and Inform Regional Ocean Management. in: D.J. Wright (ed.), Earth Solutions, Ocean Solutions pp. 171-184. Esri Press. Redlands, CA.

Layton, B.A., M.R. Raith, J.F. Griffith. 2015. Use of dye tracers and qPCR to identify human fecal contamination at Doheny State Beach, Dana Point, CA. Technical Report 860. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Griffith, J.F. 2015. Looking Ahead: New Development in Beach Water Quality Monitoring and Bacterial Source Identification. Urban Coast 5:180-184.

Cao, Y., M.R. Raith, J.F. Griffith. 2015. Droplet digital PCR for simultaneous quantification of general and human-associated fecal indicators for water quality assessment. Water Research 70:337-349.

Bay, S.M., M. Dojiri, J. Gully. 2015. Habitat Conditions: Soft-Bottom Benthos. Urban Coast 5:108-115.

Gibson, J.F., E.D. Stein, D.J. Baird, C.M. Finlayson, X. Zhang, M. Hajibabaei. 2015. Wetland Ecogenomics - The Next Generation of Wetland Biodiversity and Functional Assessment. Wetland Science and Practice 32:27-32.

Steinberg, S.J., M.M. Hanken. 2015. San Diego Integrated Regional Water Management Data Management System Basic Design Recommendations. Technical Report 878. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Schiff, K.C., J.S. Brown, S. Trump, D. Hardin. 2015. Near-Coastal Water Quality at Reference Sites Following Storm Events. Technical Report 853. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Joyce, A.S., M.S. Pirogovsky, R.G. Adams, W. Lao, D. Tsukada, C.L. Cash, J.F. Hawa, K.A. Maruya. 2015. Using performance reference compound-corrected polyethylene passive samplers and caged bivalves to measure hydrophobic contaminants of concern in urban coastal seawaters. Chemosphere 127:10-17.

Kudela, R.M., A. Bickel, M.L. Carter, M.D.A. Howard, L. Rosenfeld. 2015. The Monitoring of Harmful Algal Blooms through Ocean Observing: The Development of the California Harmful Algal Bloom Monitoring and Alert Program. in: Y. Liu, H. Kerkering, R.H. Weisbert (eds.), Coastal Ocean Observing Systems pp. 58-75. Academic Press. Boston, MA.

SCCWRP Staff. 2014. SCCWRP 2014 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2014 Annual Report. Southern California Coastal Water Research Project. Costa Mesa, CA.

Booth, J.A.T., C.B. Woodson, M. Sutula, F. Micheli, S.B. Weisberg, S.J. Bograd, A. Steele, J. Schoen, L.B. Crowder. 2014. Patterns and potential drivers of declining oxygen content along the Southern California coast. Limnology and Oceanography 59:1127-1138.

White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2014. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment. Freshwater Science 33:338-348.

Stein, E.D., K. Cayce, M. Salomon, D.L. Bram, D. De Mello, R. Grossinger, S. Dark. 2014. Wetlands of the Southern California Coast: Historical Extent and Change Over Time. Technical Report 826. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Sutula, M., M.D.A. Howard, L. Crowder, S. McAfee. 2014. Modeling in Support of Management of Coastal Hypoxia and Acidification in the California Current Ecosystem. Technical Report 829. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Mehinto, A.C., M.S. Prucha, R.C. Colli-Dula, K.J. Kroll, C.M. Lavelle, D.S. Barber, C.D. Vulpe, N.D. Denslow. 2014. Gene networks and toxicity pathways induced by acute cadmium exposure in adult largemouth bass (Micropterus salmoides). Aquatic Toxicology 152:186-194.

Fetscher, E., M. Sutula, A. Sengupta, N. Detenbeck. 2014. Linking Nutrients to Alterations in Aquatic Life in California Wadeable Streams. Technical Report 834. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Beller, E., S. Baumgarten, R. Grossinger, T. Longcore, E.D. Stein, S. Dark, S. Dusterhoff. 2014. Northern San Diego County Lagoons: Historical Ecology Investigation. Technical Report 831. San Francisco Estuary Institute. Richmond, CA.

Dodder, N., W. Lao, D. Tsukada, D.W. Diehl, K.C. Schiff. 2014. Areas of Special Biological Significance: Bioaccumulation Monitoring. Technical Report 816. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lackey, L.G., E.D. Stein. 2014. Evaluating Alternative Temporal Survey Designs For Monitoring Wetland Area And Detecting Changes Over Time In California. Journal of the American Water Resources Association 51:388-399.

Stein, E.D., J.S. Brown, K. Cayce, M. Klatt, M. Salomon, P. Pendleton, S. Dark, K. O'Connor, C. Endris. 2014. California Aquatic Resources Status and Trends Program: Mapping Methodology. Technical Report 833. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Rogowski, P., E. Terrill, L. Hazard, K.C. Schiff. 2014. Assessing Areas of Special Biological Significance Exposure to Stormwater Plumes Using a Surface Transport Model. Technical Report 817. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lackey, L.G., E.D. Stein. 2014. Selecting the optimum plot size for a California design-based stream and wetland mapping program. Environmental Monitoring and Assessment 186:2599-2608.

Mazor, R.D., E.D. Stein, P.R. Ode, K.C. Schiff. 2014. Integrating intermittent streams into watershed assessments: applicability of an index of biotic integrity. Freshwater Science 33:459-474.

Escher, B.I., M. Allinson, R. Altenburger, P.A. Bain, P. Balaguer, W. Busch, J. Crago, N.D. Denslow, E. Dopp, K. Hilscherova, A.R. Humpage, A. Kumar, M. Grimaldi, B.S. Jayasinghe, B. Jarosova, A. Jia, S. Makarov, K.A. Maruya, A. Medvedev, A.C. Mehinto, J.E. Mendez, A. Poulsen, E. Prochazka, J. Richard, A. Schifferli, D. Schlenk, S. Scholz, F. Shiraishi, S. Snyder, G. Su, J.Y.M. Tang, B. van der Burg, S.C. van der Linden, I. Werner, S.D. Westerheide, C.K.C. Wong, M. Yang, B.H.Y. Yeung, X. Zhang, F.D.L. Leusch. 2014. Benchmarking organic micropollutants in wastewater, recycled water and drinking water with in vitro bioassays. Environmental Science and Technology 48:1940-1956.

Christiansen, H.E., A.C. Mehinto, F. Yuc, R.W. Perry, N.D. Denslow, A.G. Maule, M.G. Mesa. 2014. Correlation of gene expression and contaminant concentrations in wild largescale suckers: A field-based study. Science of the Total Environment 484:379-389.

Sutula, M., L. Green, G. Cicchetti, N. Detenbeck, P. Fong. 2014. Thresholds of Adverse Effects of Macroalgal Abundance and Sediment Organic Matter on Benthic Habitat Quality in Estuarine Intertidal Flats. Estuaries and Coasts 37:1532-1548.

Vidal- Dorsch, D.E., S.M. Bay, D.J. Greenstein, M.E. Baker, G. Hardiman, J.A. Reyes, K.M. Kelley, D. Schlenk. 2014. Biological responses of marine flatfish exposed to municipal wastewater effluent. Environmental Toxicology and Chemistry 33:583-591.

Riedel, T.E., A.G. Zimmer-Faust, V. Thulsiraj, T. Madi, K.T. Hanley, D.L. Ebentier, M. Byappanahalli, B. Layton, M.R. Raith, A.B. Boehm, J.F. Griffith, P.A. Holden, O.C. Shanks, S.B. Weisberg, J.A. Jay. 2014. Detection limits and cost comparisons of human-and gull-associated conventional and quantitative PCR assays in artificial and environmental waters. Journal of Environmental Management 136:112-120.

Howard, M.D.A., M. Sutula, D.A. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin, A. Sengupta. 2014. Anthropogenic nutrient sources rival natural sources on small scales in the coastal waters of the Southern California Bight. Limnology and Oceanography 59:285-297.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, L. Stratton. 2014. A regional survey of the extent and magnitude of eutrophication in Mediterranean estuaries of Southern California, USA. Estuaries and Coasts 37:259-278.

Yau, V.M., K.C. Schiff, B.F. Arnold, J.F. Griffith, J.S. Gruber, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, A.B. Boehm, S.B. Weisberg, J.M. Colford Jr. 2014. Effect of submarine groundwater discharge on bacterial indicators and swimmer health at Avalon Beach, CA, USA. Water Research 59:23-36.

Bailey, H., C. Curran, S. Poucher, M. Sutula. 2014. Science Supporting Dissolved Oxygen Objectives for Suisun Marsh. Technical Report 830. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

McLaughlin, K., M. Sutula. 2014. Estimating Wet and Dry Deposition of Nitrogen to Southern California Streams. Technical Report 837. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Green, L., P. Fong, M. Sutula. 2014. How much is too much? Identifying benchmarks of adverse effects of macroalgae on the macrofauna in intertidal flats. Ecological Applications 24:300-314.

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, B.W. Sweeney. 2014. Does DNA barcoding improve performance of traditional stream bioassessment metrics?. Freshwater Science 33:302-311.

Jackson, J.K., J.M. Battle, B.P. White, E.M. Pilgrim, E.D. Stein, P.E. Miller, B.W. Sweeney. 2014. Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications. Freshwater Science 33:312-324.

Rippy, M.A., R. Stein, B.F. Sanders, K. Davis, K. McLaughlin, J.F. Skinner, J. Kappeler, S.B. Grant. 2014. Small Drains, Big Problems: The Impact of Dry Weather Runoff on Shoreline Water Quality at Enclosed Beaches. Environmental Science and Technology 48:14168-14177.

Rogowski, P.A., E. Terrill, K.C. Schiff, S.Y. Kim. 2014. An assessment of the transport of southern California stormwater ocean discharges. Marine Pollution Bulletin 90:135-142.

Alvarez, D.A., K.A. Maruya, N.G. Dodder, W. Lao, E.T. Furlong, K.L. Smalling. 2014. Occurrence of contaminants of emerging concern along the California coast (2009-10) using passive sampling devices. Marine Pollution Bulletin 81:347-354.

Schiff, K.C., E.D. Stein, S. Aminzadeh, A. Boehm, G. Hildebrand, L. Honeybourne, I. Nasseri, P. Ode, S. Taylor, D. Senn, J. Smith, C. Sommers, E. Strecker. 2014. Southern California Stormwater Monitoring Coalition 2014 Research Agenda. Technical Report 828. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Stein, E.D., M.C. Martinez, S. Stiles, P.E. Miller, E.V. Zakharov. 2014. Is DNA Barcoding Actually Cheaper and Faster than Traditional Morphological Methods? Results from a Survey of Freshwater Bioassessment Efforts in the United States. PLoS ONE 9:e95525.

Fernandez, L.A., W. Lao, K.A. Maruya, R.M. Burgess. 2014. Calculating the diffusive flux of persistent organic pollutants between sediments and the water column on the Palos Verdes Shelf Superfund Site using polymeric passive samplers. Environmental Science and Technology 48:3925-3934.

Greenstein, D.J., S.M. Bay, D.L. Young, S. Asato, K.A. Maruya, W. Lao. 2014. The use of sediment toxicity identification evaluation methods to evaluate clean up targets in an urban estuary. Integrated Environmental Assessment and Management 10:260-268.

Maruya, K.A., N.G. Dodder, C.L. Tang, W. Lao, D. Tsukada. 2014. Which coastal and marine environmental contaminants are truly emerging?. Environmental Science and Pollution Research 22:1644-1652.

Maruya, K.A., N.G. Dodder, S.B. Weisberg, D. Gregorio, J.S. Bishop, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, S. Bricker, K.L. Kimbrough, G.G. Lauenstein. 2014. The mussel watch California pilot study on contaminants of emerging concern (CECs): Synthesis and next steps. Marine Pollution Bulletin 81:355-363.

Raimondi, P. 2014. Characterization of the Rocky Intertidal Ecological Communities Associated with Southern California Areas of Special Biological Significance: Phase II. Technical Report 818. Southern California Coastal Water Research Project. Costa Mesa, CA.

Dodder, N.G., K.A. Maruya, P.L. Ferguson, R. Grace, S. Klosterhaus, M.J. La Guardia, G.G. Lauenstein, J. Ramirez. 2014. Occurrence of contaminants of emerging concern in mussels (Mytilus spp.) along the California coast and the influence of land use, storm water discharge, and treated wastewater effluent. Marine Pollution Bulletin 81:340-346.

Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans, D.A. Caron. 2014. Development, Comparison, and Validation Using ELISAs for the Determination of Domoic Acid in California Sea Lion Body Fluids. Journal of the Association of Official Analytical Chemists 97:345-355.

Martinovic-Weigelt, D., A.C. Mehinto, G.T. Ankley, N.D. Denslow, L.B. Barber, K.E. Lee, R.J. King, H.L. Schoenfuss, A.L. Schroeder, D.L. Villeneuve. 2014. Transcriptomic Effects-Based Monitoring for Endocrine Active Chemicals: Assessing Relative Contribution of Treated Wastewater to Downstream Pollution. Environmental Science and Technology 48:2385-2394.

Maruya, K.A., N.G. Dodder, R.A. Schaffner, S.B. Weisberg, D. Gregorio, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, K.L. Kimbrough, G.G. Lauenstein, J.D. Christensen. 2014. Refocusing mussel watch on contaminants of emerging concern (CECs): The California pilot study (2009-10). Marine Pollution Bulletin 81:334-339.

Schiff, K.C., A.E. Fetscher, M.M. Hanken. 2014. Newport Bay Watershed Monitoring Evaluation. Technical Report 815. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lee, R.F., K.A. Maruya, U. Warttinger, K. Bulski, A.N. Walker. 2014. Emulsions Produced After Oil Spills: Their Fate In Estuaries And Effects On The Grass Shrimp, Palaemonetes pugio And Blue Crab, Callinectes sapidus. in: C. Valenti (ed.), Crude Oils: Production, Environmental Impacts and Global Market Challenges pp. 1-22. Novinka Science Publishers. New York, NY.

Parkerton, T.F., K.A. Maruya. 2013. Passive sampling in contaminated sediment assessment: Building consensus to improve decision-making. Integrated Environmental Assessment and Management 10:163-166.

Thompson, B., J.A. Ranasinghe, S. Lowe, A. Melwani, S.B. Weisberg. 2013. Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA. Environmental Monitoring and Assessment 185:2281-2295.

White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2013. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 323-335. Southern California Coastal Water Research Project. Costa Mesa, CA.

Day, J., F. Sklar, J. Cable, D. Childers, C. Coronado-Molina, S. Davis, S. Kelly, C. Madden, B. Perez, E. Reyez, D. Rudnick, M. Sutula. 2013. The salinity transition zone between the Southern Everglades and Florida Bay. in: J.W. Day, A. Yanez-Arancibia (eds.), Gulf of Mexico: Origin, Waters, and Biota - Volume 4: Ecosystem-Based Management pp. 1-24. Texas A&M University Press. College Station, TX.

Griffith, J.F., B.A. Layton, A.B. Boehm, P.A. Holden, J.A. Jay, C. Hagedorn, C.D. McGee, S.B. Weisberg. 2013. The California Microbial Source Identification Manual: A Tiered Approach to Identifying Fecal Pollution Sources to Beaches. Technical Report 804. Southern California Coastal Water Research Project. Costa Mesa, CA.

Dorsch, D.E., R.C. Colli-Dula, S.M. Bay, D.J. Greenstein, L. Wilborg, D. Petschauer, N.D. Denslow. 2013. Gene expression of fathead minnows exposed to two types of treated municipal wastewater effluents. Environmental Science and Technology 47:11268-11277.

Greenstein, D.J., S.M. Bay, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K. Ritter, K.C. Schiff. 2013. Regional assessment of marine and estuarine sediment toxicity in Southern California, USA. Environmental Monitoring and Assessment 185:2055-2065.

Vidal-Dorsch, D.E., R.C. Colli-Dula, S.M. Bay, D.J. Greenstein, L. Wiborg, D. Petschauer, N.D. Denslow. 2013. Gene expression of fathead minnows (Pimephales promelas) exposed to two types of treated municipal wastewater effluents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 137-151. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fetscher, A.E., M. Sutula, L.B. Busse, E.D. Stein. 2013. Condition of California perennial wadeable streams based on algal indicators. Technical Report 781. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stewart, J.R., A.B. Boehm, E.A. Dubinsky, T.T. Fong, K.D. Goodwin, J.F. Griffith, R.T. Noble, O.C. Shanks, K. Vijayavel, S.B. Weisberg. 2013. Recommendations following a multi-laboratory comparison of microbial source tracking methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 581-593. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stewart, J.R., A.B. Boehm, E.A. Dubinsky, T.-T. Fong, K.D. Goodwin, J.F. Griffith, R.T. Noble, O.C. Shanks, K. Vijayavel, S.B. Weisberg. 2013. Recommendations following a multi-laboratory comparison of microbial source tracking methods. Water Research 47:6829-6838.

Layton, B.A., Y. Cao, D.L. Ebentier, K. Hanley, E. Balleste, J. Brandao, M. Byappanahalli, R. Converse, A.H. Farnleitner, J. Gentry- Shields and. 2013. Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 445-459. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sinigalliano, C.D., J. Ervin, L.C. Van De Werfhorst, B.D. Badgley, E. Balleste, J. Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, J.A. Jay, B.A. Layton, C. Lee, J. Lee, W.G. Meijer, R. Noble, M.R. Raith, H. Ryu, M.J. Sadowsky, A. Schriewer, D. Wang, D. Wanless, R.L. Whitman, S. Wuertz, J.W. Santo Domingo. 2013. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. Water Research 47:6883-6896.

Raith, M.R., D.L. Ebentier, Y. Cao, J.F. Griffith, S.B. Weisberg. 2013. Factors affecting the relationship between quantitative polymerase chain reaction (qPCR) and culture-based enumeration of Enterococcus in environmental waters. Journal of Applied Microbiology 116:737-746.

Stein, E.D. 2013. Using regional stormwater monitoring programs to provide reference data for wetland mitigation performance evaluation. National Wetlands Newsletter 35:13-14.

Raith, M.R., C.A. Kelty, J.F. Griffith, A. Schriewer, S. Wuertz, S. Mieszkin, M. Gourmelon, G.H. Reischer, A.H. Farnleitner, J.S. Ervin, P.A. Holden, D.L. Ebentier, J.A. Jay, D. Wang, A.B. Boehm, T. Gim Aw, J.B. Rose, E. Balleste, W.G. Meijer, M. Sivaganesan, O.C. Shanks. 2013. Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources. Water Research 47:6921-6928.

Raith, M.R., C.A. Kelty, J.F. Griffith, A. Schriewer, S. Wuertz, S. Mieszkin, M. Gourmelon, G.H. Reischer, A.H. Farnleitner, J.S. Ervin, P.A. Holden, D.L. Ebentier, J.A. Jay, D. Wang, A.B. Boehm, T.G. Aw, J.B. Rose, E. Balleste, W.G. Meijer, M. Sivaganesan, O.C. Shanks. 2013. Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 491-500. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ervin, J.S., T.L. Russell, B.A. Layton, K.M. Yamahara, D. Wang, L.M. Sassoubre, Y. Cao, C.A. Kelty, M. Sivaganesan, A.B. Boehm, P.A. Holden, S.B. Weisberg, O.C. Shanks. 2013. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 555-566. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ervin, J.S., T.L. Russell, B.A. Layton, K.M. Yamahara, D. Wang, L.M. Sassoubre, Y. Cao, C.A. Kelty, M. Sivaganesan, A.B. Boehm, P.A. Holden, S.B. Weisberg, O.C. Shanks. 2013. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods. Water Research 47:6873-6882.

Lackey, L.G., E.D. Stein. 2013. Evaluation of design-based sampling options for monitoring stream and wetland extent and distribution in California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 377-388. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lackey, L.G., E.D. Stein. 2013. Evaluation of design-based sampling options for monitoring stream and wetland extent and distribution in California. Wetlands 33:717-725.

Cao, Y., L.C. Van De Werfhorst, E.A. Dubinsky, B.D. Badgley, M.J. Sadowsky, G.L. Andersen, J.F. Griffith, P.A. Holden. 2013. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 461-474. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., L.C. Van De Werfhorst, E.A. Dubinsky, B.D. Badgley, M.J. Sadowsky, G.L. Andersen, J.F. Griffith, P.A. Holden. 2013. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Research 47:6862-6872.

Burke, M.P., T.S. Hogue, A. Kinoshita, J. Barco, C. Wessel, E.D. Stein. 2013. Pre- and post-fire pollutant loads in an urban fringe watershed in Southern California. Environmental Monitoring and Assessment 185:10131-10145.

Mazor, R.D., E.D. Stein, P.R. Ode, K.C. Schiff. 2013. Integrating intermittent streams into watershed assessments: Applicability of an index of biotic integrity. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 357-375. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., C. Hagedorn, O.C. Shanks, D. Wang, J. Ervin, J.F. Griffith, B.A. Layton, C.D. McGee, T.E. Riedel, S.B. Weisberg. 2013. Towards establishing a human fecal contamination index for microbial source tracking. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 567-579. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fetscher, A.E. 2013. Development of Algal Indices of Biotic Integrity for Southern California Wadeable Streams and Recommendations for their Applications, v3. Technical Report 730. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., C. Hagedorn, O.C. Shanks, D. Wang, J. Ervin, J.F. Griffith, B.A. Layton, C.D. McGee, T.E. Riedel, S.B. Weisberg. 2013. Towards establishing a human fecal contamination index in microbial source tracking. International Journal of Chemical and Environmental Engineering Systems 4:46-58.

Stancheva, R., R.G. Sheath, B.A. Read, K.D. McArthur, C. Schroepfer, J.P. Kociolek, A.E. Fetscher. 2013. Nitrogen-fixing cyanobacteria (free living and diatom endosymbionts): Their use in southern California stream bioassessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 205-222. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stancheva, R., R.G. Sheath, B.A. Read, K.D. McArthur, C. Schroepfer, J.P. Kociolek, A.E. Fetscher. 2013. Nitrogen-fixing cyanobacteria (free-living and diatom endosymbionts): their use in southern California stream bioassessment. Hydrobiologia 720:111-127.

Cao, Y., M. Sivaganesan, J. Kinzelman, A.D. Blackwood, R.T. Noble, R.A. Haugland, J.F. Griffith, S.B. Weisberg. 2013. Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods. Water Research 47:233-241.

Lopez, S.R., T.S. Hogue, E.D. Stein. 2013. A framework for evaluating regional hydrologic sensitivity to climate change using archetypal watershed modeling. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 389-408. Southern California Coastal Water Research Project. Costa Mesa, CA.

Harwood, V.J., A.B. Boehm, L.M. Sassoubre, K. Vijayavel, J.R. Stewart, T.-T. Fong, M.P. Caprais, R.R. Converse, D. Diston, J. Ebdon, J.A. Fuhrman, M. Gourmelon, J. Gentry-Shields, J.F. Griffith, D.R. Kashian, R.T. Noble, H. Taylor, M. Wicki. 2013. Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. Water Research 47:6929-6943.

Vidal-Dorsch, D.E., S.M. Bay, C. Ribecco, L.J. Sprague, M. Angert, C. Ludka, O. Carnevali, D.J. Greenstein, D. Schlenk, K.M. Kelley, J.A. Reyes, S. Snyder, B. Vanderford, L.C. Wiborg, D. Petschauer, R. Sasik, M. Baker, G. Hardiman. 2013. Genomic and phenotypic response of hornyhead turbot exposed to municipal wastewater effluents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 153-168. Southern California Coastal Water Research Project. Costa Mesa, CA.

Layton, B.A., Y. Cao, D.L. Ebentier, K. Hanley, E. Balleste, J. Brandao, M. Byappanahalli, R. Converse, A. Farnleitner, J. Gentry-Shields, M.L. Gidley, M. Gourmelon, C. Soo Lee, J. Lee, S. Lozach, T. Madi, W.G. Meijer, R. Noble, L. Peed, G.H. Reischer, R. Rodrigues, J.B. Rose, A. Schriewer, C. Sinigalliano, S. Srinivasan, J. Stewart, L.C. Van De Werfhorst, D. Wang, R. Whitman, S. Wuertz, J. Jay, P.A. Holden, A.B. Boehm, O. Shanks, J.F. Griffith. 2013. Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. Water Research 47:6897-6908.

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2013. Eutrophication and Nutrient Cycling in Santa Margarita River Estuary: A Summary of Baseline Studies for Monitoring Order R9-2006-0076. Technical Report 635. Southern California Coastal Water Research Project. Costa Mesa, CA.

Harwood, V.J., A.B. Boehm, L.M. Sassoubre, K. Vijayavel, J.R. Stewart, T.T. Fong, M.P. Caprais, R.R. Converse, D. Diston, J. Ebdon, J.A. Fuhrman, M. Gourmelon, J. Gentry- Shields, J.F. Griffith, D.R. Kashian, R.T. Noble, H. Taylor, M. Wicki. 2013. Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 501-521. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality. Technical Report 710. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix A). Technical Report 710.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix B). Technical Report 710.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sapozhnikova, Y., E. Wirth, K.C. Schiff, M. Fulton. 2013. Antifouling biocides in water and sediments from California marinas. Marine Pollution Bulletin 69:189-194.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix C). Technical Report 710.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix D). Technical Report 710.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ghosh, U., S.K. Driscoll, R.M. Burgess, M.T.O. Jonker, D. Reible, F. Gobas, Y. Choi, S.E. Apitz, K.A. Maruya, W.R. Gala, M. Mortimer, C. Beegan. 2013. Passive Sampling Methods for Contaminated Sediments: Practical Guidance for Selection, Calibration, and Implementation. Integrated Environmental Assessment and Management 10:210-223.

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix E). Technical Report 710.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, L. Stratton. 2013. A regional survey of the extent and magnitude of eutrophication in Mediterranean estuaries of southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 223-244. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schriewer, A., K.D. Goodwin, C.D. Sinigalliano, A.M. Cox, D. Wanless, J. Bartkowiak, D.L. Ebentier, K.T. Hanley, J. Ervin, L.A. Deering, O.C. Shanks, L.A. Peed, W.G. Meijer, J.F. Griffith, J. SantoDomingo, J.A. Jay, P.A. Holden, S. Wuertz. 2013. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 541-553. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schriewer, A., K.D. Goodwin, C.D. Sinigalliano, A.M. Cox, D. Wanless, J. Bartkowiak, D.L. Ebentier, K.T. Hanley, J. Ervin, L.A. Deering, O.C. Shanks, L.A. Peed, W.G. Meijer, J.F. Griffith, J. SantoDomingo, J.A. Jay, P.A. Holden, S. Wuertz. 2013. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. Water Research 47:6909-6920.

Ranasinghe, J.A., E.D. Stein, M.R. Frazier, D.J. Gillett. 2013. Development of Puget Sound Benthic Indicators. Technical Report 755. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bourlat, S.J., A. Borja, J. Gilbert, M.I. Taylor, N. Davies, S.B. Weisberg, J.F. Griffith, T. Lettieri, D. Field, J. Benzie, F.O. Glockner, N. Rodriguez-Ezpeleta, D.P. Faith, T.P. Bean, M. Obst. 2013. Genomics in marine monitoring: New opportunities for assessing marine health status. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 115-135. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bourlat, S.J., A. Borja, J. Gilbert, M.I. Taylor, N. Davies, S.B. Weisberg, J.F. Griffith, T. Lettieri, D. Field, J. Benzie, F.O. Glockner, N. Rodriguez-Ezpeleta, D.P. Faith, T.P. Bean, M. Obst. 2013. Genomics in marine monitoring: New opportunities for assessing marine health status. Marine Pollution Bulletin 74:19-31.

Sengupta, A., M. Sutula, K. McLaughlin, M.D.A. Howard, L.L. Tiefenthaler, T. Von Bitner. 2013. Terrestrial nutrient loads and fluxes to the Southern California Bight, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 245-258. Southern California Coastal Water Research Project. Costa Mesa, CA.

Arnold, B.F., K.C. Schiff, J.F. Griffith, J.S. Gruber, V. Yau, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, S.B. Weisberg, J.M. Colford Jr. 2013. Swimmer illness associated with marine water exposure and water quality indicators: Impact of widely used assumptions. Epidemiology 24:845-853.

Arnold, B.F., K.C. Schiff, J.F. Griffith, J.S. Gruber, V. Yau, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, S.B. Weisberg, J.M. Colford Jr. 2013. Swimmer illness associated with marine water exposure and water quality indicators: Impact of widely used assumptions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 611-624. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., B. Bledsoe. 2013. Framework for Developing Hydromodification Monitoring Programs. Technical Report 752. Southern California Coastal Water Research Project. Costa Mesa, CA.

Baker, M.E., D.E. Vidal-Dorsch, C. Ribecco, L.J. Sprague, M. Angert, N. Lekmine, C. Ludka, A. Martella, E. Ricciardelli, S.M. Bay, J.R. Gully, K.M. Kelley, C. Schlenk, O. Carnevali, R. Sasik, G. Hardiman. 2013. Molecular analysis of endocrine disruption in hornyhead turbot at wastewater outfalls in southern California using a second generation multi-species microarray. PLoS ONE 8:e75553.

Stein, E.D., B. Bledsoe. 2013. Modeling and Managing Hydromodification Effects: Summary of Available Tools and Decision-Making Approach. Technical Report 753. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, B.W. Sweeney. 2013. Does DNA barcoding improve performance of traditional stream bioassessment metrics?. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 309-321. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ebentier, D.L., K.T. Hanley, Y. Cao, B.D. Badgley, A.B. Boehm, J.S. Ervin, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, C.A. Kelty, S. Lozach, C. McGee, L.A. Peed, M.R. Raith, H. Ryu, M.J. Sadowsky, E.A. Scott, J. Santo Domingo, A. Schriewer, C.D. Sinigalliano, O.C. Shanks, L.C. Van De Werfhorst, D. Wang, S. Wuertz, J.A. Jay. 2013. Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 433-444. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ebentier, D.L., K.T. Hanley, Y. Cao, B.D. Badgley, A.B. Boehm, J.S. Ervin, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, C.A. Kelty, S. Lozach, C.M.c.G.e.e. , L.A. Peed, M.R. Raith, H. Ryu, M.J. Sadowsky, E.A. Scott, J.S. Domingo, A. Schriewer, C.D. Sinigalliano, O.C. Shanks, L.C. Van De Werfhorst, D. Wang, S. Wuertz, J.A. Jay. 2013. Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods. Water Research 47:6839-6848.

Sinigalliano, C.D., J. Ervin, L.C. Van De Werfhorst, B. Badgley, E. Ballest?, J. Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon. 2013. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 523-539. Southern California Coastal Water Research Project. Costa Mesa, CA.

Panteleev, G., V. Luchin, N.P. Nezlin, T. Kikuchi. 2013. Seasonal climatologies of oxygen and phosphates in the Bering Sea reconstructed by variational data assimilation approach. Polar Science 7:214-232.

McLaughlin, K., J.A. Sohm, G.A. Cutter, M.W. Lomas, A. Paytan. 2013. Phosphorus cycling in the Sargasso Sea: Investigation using the oxygen isotopic composition of phosphate, enzyme-labeled fluorescence, and turnover times. Global Biogeochemical Cycles 27:375-387.

Alvarez, D., K.A. Maruya, N.G. Dodder, W. Lao, E. Furlong, K. Smalling. 2013. Occurrence of contaminants of emerging concern along the California coast (2009-10) using passive sampling devices. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 49-59. Southern California Coastal Water Research Project. Costa Mesa, CA.

Vidal-Dorsch, D.E., S.M. Bay, C. Ribecco, L.J. Sprague, M. Angert, C. Ludka, E. Ricciardelli, O. Carnevali, D.J. Greenstein, D. Schlenk, K.M. Kelley, J.A. Reyes, S. Snyder, B. Vanderford, L.C. Wiborg, D. Petschauer, R. Sasik, M. Baker, G. Hardiman. 2013. Genomic and phenotypic response of hornyhead turbot exposed to municipal wastewater effluents. Aquatic Research 140-141:174-184.

Maruya, K.A., D. Schlenk, P.D. Anderson, N.D. Denslow, J.E. Drewes, A.W. Olivieri, G.I. Scott, S.A. Snyder. 2013. An adaptive, comprehensive monitoring strategy for chemicals of emerging concern (CECs) in California's aquatic ecosystems. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 1-12. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., B.P. White, R.D. Mazor, P.E. Miller, E.M. Pilgrim. 2013. Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates. PLoS ONE 8:e51273.

Maruya, K.A., D. Schlenk, P.D. Anderson, N.D. Denslow, J.E. Drewes, A.W. Olivieri, G.I. Scott, S.A. Snyder. 2013. An adaptive, comprehensive monitoring strategy for chemicals of emerging concern (CECs) in California's aquatic ecosystems. Integrated Environmental Assessment and Management 10:69-77.

Sutula, M., H. Bailey, S. Poucher. 2013. Science Supporting Dissolved Oxygen Objectives in California Estuaries. Technical Report 684. Southern California Coastal Water Research Project. Costa Mesa, CA.

Love, D.C., R.A. Rodriguez, C.D. Gibbons, J.F. Griffith, Q. Yu, J. Stewart, M.D. Sobsey. 2013. Human viruses and viral indicators in marine water at two beaches in southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 595-610. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., M.R. Cover, A.E. Fetscher, C. O'Reilly, R. Guardado, C.W. Solek. 2013. Reach-scale geomorphic and biological effects of localized streambank armoring. Journal of the American Water Resources Association 49:780-792.

Fetscher, A.E., R. Stancheva, J.P. Kociolek, R.G. Sheath, E.D. Stein, R.D. Mazor, P.R. Ode, L.B. Busse. 2013. Development and comparison of stream indices of biotic integrity using diatoms vs. non-diatom algae vs. a combination. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 183-204. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fetscher, A.E., R. Stancheva, J.P. Kociolek, R.G. Sheath, E.D. Stein, R.D. Mazor, P.R. Ode, L.B. Busse. 2013. Development and comparison of stream indices of biotic integrity using diatoms vs. non-diatom algae vs. a combination. Journal of Applied Phycology 26:433-450.

Greenstein, D.J., S.M. Bay, D. Young, S. Asato, K.A. Maruya, W. Lao. 2013. The use of sediment toxicity identification evaluation methods to evaluate clean-up targets in an urban estuary. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 169-181. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tunis, L., K. Lunde, R. Payne, G. Sibbald, C. Clark, K. O'Connor, R. Clark, A. Solomesheh, C. Witham, M. Denn, C. Roberts, M. Stevens, C. Grosso, J. Collins, S. Pearce, C. Solek, E.D. Stein, C. Harvey, D. Weixelman, P. Jones, M. Scianni. 2013. California Rapid Assessment Method for Wetlands User's Manual Version 6.1. Technical Report 788. California Wetlands Monitoring Workgroup. Sacramento, CA.

Cao, Y., L.C. Van De Werfhorst, E.A. Scott, M.R. Raith, P.A. Holden, J.F. Griffith. 2013. Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 475-490. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., L.C. Van De Werfhorst, E.A. Scott, M.R. Raith, P.A. Holden, J.F. Griffith. 2013. Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP. Water Research 47:6944-6955.

Maruya, K.A., N.G. Dodder, S.B. Weisberg, D. Gregorio, J.S. Bishop, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, S. Bricker, K.L. Kimbrough, G.G. Lauenstein. 2013. The Mussel Watch California Pilot Study on contaminants of emerging concern (CECs): Synthesis and next steps. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 61-73. Southern California Coastal Water Research Project. Costa Mesa, CA.

Resh, V.H., L.A. Beche, J.E. Lawrence, R.D. Mazor, E.P. McElravy, A.P. O'Dowd, D. Rudnick, S.M. Carlson. 2013. Long-term population and community patterns of benthic macroinvertebrates and fishes in Northern California Mediterranean-climate streams. Hydrobiologia 719:93-118.

Dodder, N.G., K.A. Maruya, P.L. Ferguson, R. Grace, S. Klosterhaus, a.n.d. MJ La Guardia, G.G. Lauenstein, J. Ramirez. 2013. Occurrence of contaminants of emerging concern in mussels (Mytilus spp.) along the California coast and the influence of land use, stormwater discharge, and treated wastewater effluent. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 37-47. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller, E.L. Seubert, D.A. Caron. 2013. Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 259-272. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller, E.L. Seubert, D.A. Caron. 2013. Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007. Journal of Plankton Research 35:1080-1092.

Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron. 2013. Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 273-291. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.J. Greenstein, S.L. Moore, K.J. Ritter, J.A. Ranasinghe. 2013. Evaluation of Sediment Condition Using California's Sediment Quality Objectives Assessment Framework. Technical Report 764. Southern California Coastal Water Research Project. Costa Mesa, CA.

Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron. 2013. Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA. Environmental Science and Pollution Research 20:6878-6895.

Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans, D.A. Caron. 2013. Development, comparison and validation using ELISAs for the analysis of domoic acid in California sea lion body fluids. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 293-308. Southern California Coastal Water Research Project. Costa Mesa, CA.

Brown, J.S., E.D. Stein, D. Ackerman, J.H. Dorsey, J. Lyon, P.M. Carters. 2013. Metals and bacteria partitioning to various size particles in Ballona Creek storm water runoff. Environmental Toxicology and Chemistry 32:320-328.

Lydy, M.J., P.F. Landrum, A.M.P. Oen, M. Allinson, F. Smedes, A.D. Harwood, H. Li, K.A. Maruya, J. Liu. 2013. Passive sampling methods for contaminated sediments: State of the science for organic contaminants. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 75-94. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lydy, M.J., P.F. Landrum, A.M.P. Oen, M. Allinson, F. Smedes, A.D. Harwood, H. Li, K.A. Maruya, J. Liu. 2013. Passive sampling methods for contaminated sediments: State of the science for organic contaminants. Integrated Environmental Assessment and Management 10:167-178.

Lunde, K.B., M.R. Cover, R.D. Mazor, C.A. Sommers, V.H. Resh. 2013. Identifying reference conditions and quantifying biological variability within benthic macroinvertebrate communities in perennial and non-perennial northern California streams. Environmental Management 51:1262-1273.

Ferguson, D.M., J.F. Griffith, C.D. McGee, S.B. Weisberg, C. Hagedorn. 2013. Comparison of Enterococcus species diversity in marine water and wastewater using enterolert and EPA method 1600. Journal of Environmental and Public Health 2013:11-16.

Wang, P.F., M. Sutula, B. Chadwick, W. Choi. 2013. Watershed Loading, Hydrodynamic, and Water Quality Modeling in Support of the Loma Alta Slough Bacteria and Nutrient TMDL. Technical Report 666. Southern California Coastal Water Research Project. Costa Mesa, CA.

Maruya, K.A., N.G. Dodder, R.A. Schaffner, S.B. Weisberg, D. Gregorio, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, K.L. Kimbrough, G.G. Lauenstein, J.D. Christensen. 2013. Refocusing Mussel Watch on contaminants of emerging concern (CECs): The California Pilot Study (2009-10). in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 27-35. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ghosh, U., S. Kane-Driscoll, R.M. Burgess, M.T.O. Jonker, D. Reible, F. Gobas, Y. Choi, S.E. Apitz, K.A. Maruya, W.R. Gala, M. Mortimer, C. Beegan. 2013. Passive sampling methods for contaminated sediments: Practical guidance for selection, calibration and implementation. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 95-114. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sengupta, A., J.M. Lyons, D.J. Smith, J.E. Drewes, S.A. Snyder, A. Heil, K.A. Maruya. 2013. The occurrence and fate of chemicals of emerging concern (CECs) in coastal urban rivers receiving discharge of treated municipal wastewater effluent. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 13-25. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sengupta, A., M.J. Lyons, D.J. Smith, J.E. Drewes, S.A. Snyder, A. Heil, K.A. Maruya. 2013. The occurrence and fate of chemicals of emerging concern (CECs) in coastal urban rivers receiving discharge of treated municipal wastewater effluent. Environmental Toxicology and Chemistry 33:350-358.

Ode, P., A. Rehn, R.D. Mazor, K.C. Schiff, E.D. Stein, J. May, L. Brown, D. Herbst, D.J. Gillett, K. Lunde, C.P. Hawkins. 2013. Evaluating the adequacy of a reference-site pool for the ecological assessment of streams in environmentally complex regions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 337-355. Southern California Coastal Water Research Project. Costa Mesa, CA.

Boehm, A.B., L.C. Van De Werfhorst, J.F. Griffith, P.A. Holden, J.A. Jay, O.C. Shanks, D. Wanga, S.B. Weisberg. 2013. Performance of forty-one microbial source tracking methods: A twenty-seven lab evaluation study. Water Research 47:6812-6828.

Boehm, A.B., L.C. Van De Werfhorst, J.F. Griffith, P.A. Holden, J.A. Jay, O.C. Shanks, D. Wang, S.B. Weisberg. 2013. Performance of forty-three microbial source tracking methods: A twenty-seven laboratory evaluation study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 409-431. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., D. Tsukada, K.A. Maruya. 2012. The effect of co-occurring polychlorinated biphenyls on quantitation of toxaphene in fish tissue samples by gas chromatography negative ion mass spectrometry. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 61-72. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., D. Tsukada, K.A. Maruya. 2012. The effect of co-occurring polychlorinated biphenyls on quantitation of toxaphene in fish tissue samples by gas chromatography negative ion mass spectrometry. Journal of Chromatography A 1270:262-268.

Ebentier, D.L., M.R. Raith, Y. Cao, J.F. Griffith, S.B. Weisberg. 2012. Factors affecting the relationship between qPCR and culture-based enumeration of Enterococcus. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 253-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gillett, D.J., D.J. Pondella II, J. Freiwald, K.C. Schiff, J.E. Caselle, C. Shuman, S.B. Weisberg. 2012. Comparing volunteer and professionally collected monitoring data from the rocky subtidal reefs of Southern California, USA. Environmental Monitoring and Assessment 184:3239-3257.

Piontkovski, S.A., N.P. Nezlin, A. Al-Azri, K. Al-Hashmi. 2012. Mesoscale eddies and variability of chlorophyll-a in the Sea of Oman. International Journal of Remote Sensing 33:5341-5346.

Ranasinghe, J.A., K.I. Welch, P.N. Slattery, D.E. Montagne, D.D. Huff, H. Lee II, J.L. Hyland, B. Thompson, S.B. Weisberg, J.M. Oakden, D.B. Cadien, R.G. Velarde. 2012. Habitat-related benthic macrofaunal assemblages of bays and estuaries of the western United States. Integrated Environmental Assessment and Management 8:638-648.

Pondella II, D.J., J. Williams, J. Claisse, R.A. Schaffner, K. Ritter, K.C. Schiff. 2012. Southern California Bight 2008 Regional Monitoring Program: V. Rocky Reefs. Technical Report 685. Southern California Coastal Water Research Project. Costa Mesa, CA.

Miller, E.F., K.C. Schiff. 2012. Descriptive trends in SCB demersal fish assemblages since 1994. California Cooperative Oceanic Fisheries Investigations Reports 53:107-131.

Miller, E.F., K.C. Schiff. 2012. Descriptive trends in Southern California Bight demersal fish assemblages, 1994-2008. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 129-144. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., E.D. Stein, P.E. Miller, S.B. Weisberg. 2012. Performance of two southern California benthic community condition indices using species abundance and presence-only data: Relevance to DNA barcoding. PLoS ONE 7:e40875.

Solek, C.W., E.D. Stein. 2012. An Evaluation of Wetland Restoration Projects in Southern California using the California Rapid Assessment Method (CRAM): A Final Report to the Southern California Wetlands Recovery Project. Technical Report 659. Southern California Coastal Water Research Project. Costa Mesa, CA.

Setty, K., K.C. Schiff, S.B. Weisberg. 2012. Forty Years after the Clean Water Act: A Retrospective Look at the Southern California Coastal Ocean. Technical Report 727. Southern California Coastal Water Research Project. Costa Mesa, CA.

Shanks, O.C., M. Sivaganesan, L. Peed, C.A. Kelty, A.D. Blackwood, M.R. Greene, R.T. Noble, R.N. Bushon, E.A. Stelzer, J. Kinzelman, T. Anan'eva, C. Sinigalliano, D. Wanless, J.F. Griffith, Y. Cao, S.B. Weisberg, V.J. Harwood, C. Staley, K.H. Oshima, M. Varma, R.A. Haugland. 2012. Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. Environmental Science and Technology 46:945-953.

Shanks, O.C., M. Sivaganesan, L.i.n.d.s.a.y. Peed, C.A. Kelty, A.D. Blackwood, M.R. Greene, R.T. Noble, R.N. Bushon, E.A. Stelzer, J. Kinzelman, T. Anan'eva, C. Sinigalliano, D. Wanless, J.F. Griffith, Y. Cao, S.B. Weisberg, V.J. Harwood, C. Staley, K.H. Oshima, M. Varma, R.A. Haugland. 2012. Inter-laboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 273-286. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ryu, H., J.F. Griffith, I.U.H. Khan, S. Hill, T.A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, J. Santo Domingo. 2012. Comparison of gull feces-specific assays targeting the 16S rRNA gene of Catellicoccus marimammalium and Streptococcus spp. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 309-322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ryu, H., J.F. Griffith, I.U.H. Khan, S. Hill, T.A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, J. Santo Domingo. 2012. Comparison of gull feces-specific assays targeting the 16S rRNA genes of Catellicoccus marimammalium and Streptococcus spp. Applied and Environmental Microbiology 78:1909-1916.

Ryu, H., M. Henson, M. Elk, C. Toledo-Hernandez, J.F. Griffith, D. Blackwood, R. Noble, M. Gourmelon, S. Glassmeyer, J. Santo Domingo. 2012. Development of quantitative PCR assays targeting 16S rRNA gene of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 341-356. Southern California Coastal Water Research Project. Costa Mesa, CA.

Converse, R.R., J.F. Griffith, R.T. Noble, R.A. Haugland, K.C. Schiff, S.B. Weisberg. 2012. Correlation between quantitative polymerase chain reaction and culture-based methods for measuring Enterococcus over various temporal scales and three California marine beaches. Applied and Environmental Microbiology 78:1237-1242.

Brown, J.S., D. Ackerman, E.D. Stein. 2012. Continuous in situ characterization of particulate sizes in urban stormwater: Method testing and refinement. Journal of Environmental Engineering 138:673-679.

Bay, S.M., C.D. Vulpe, A.V. Loguinov, A. Arai. 2012. Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification. Technical Report 660. Southern California Coastal Water Research Project. Costa Mesa, CA.

Dodder, N.G., K.A. Maruya, G.G. Lauenstein, J. Ramirez, K.J. Ritter, K.C. Schiff. 2012. Distribution and sources of polybrominated diphenyl ethers in the southern California Bight. Environmental Toxicology and Chemistry 31:2239-2245.

Bay, S.M., C.D. Vulpe, A.V. Loguinov, A. Arai. 2012. Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification (Appendices B-D). Technical Report 660.Z. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., S.B. Weisberg. 2012. Framework for interpreting sediment quality triad data. Integrated Environmental Assessment and Management 8:589-596.

Maruya, K.A., D.E. Vidal-Dorsch, S.M. Bay, J.W. Kwon, K. Xia, K.L. Armbrust. 2012. Organic contaminants of emerging concern in sediments and flatfish collected near outfalls discharging treated wastewater effluent to the southern California Bight. Environmental Toxicology and Chemistry 31:2683-2688.

Cao, Y., L.C. Van De Werfhorst, B. Sercu, J.L.S. Murray, P.A. Holden. 2012. Application of an integrated community analysis approach for microbial source tracking in a coastal creek. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 299-308. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., J.F. Griffith, S. Dorevitch, S.B. Weisberg. 2012. Effectiveness of qPCR permutations, internal controls and dilution as means for minimizing the impact of inhibition while measuring Enterococcus in environmental waters. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 287-298. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., J.F. Griffith, S. Dorevitch, S.B. Weisberg. 2012. Effectiveness of qPCR permutations, internal controls and dilution as means for minimizing the impact of inhibition while measuring Enterococcus in environmental waters. Journal of Applied Microbiology 113:66-75.

Cao, Y., M. Sivaganesan, J. Kinzelman, A.D. Blackwood, R.T. Noble, R.A. Haugland, J.F. Griffith, S.B. Weisberg. 2012. Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 261-272. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ritter, K.J., S.M. Bay, R.W. Smith, D.E. Vidal-Dorsch, L.J. Field. 2012. Development and evaluation of sediment quality guidelines based on benthic macrofauna responses. Integrated Environmental Assessment and Management 8:610-624.

Mazor, R.D., K.C. Schiff, P. Ode, E.D. Stein. 2012. Final Report on Bioassessment in Nonperennial Streams - Report to the State Water Resources Control Board. Technical Report 695. Southern California Coastal Water Research Projec. Costa Mesa, CA.

Bay, S.M., K.J. Ritter, D.E. Vidal-Dorsch, L.J. Field. 2012. Comparison of national and regional sediment quality guidelines for classifying sediment toxicity in California. Integrated Environmental Assessment and Management 8:597-609.

Lopez, S.R., T.S. Hogue, E.D. Stein. 2012. A framework for evaluating regional hydrologic sensitivity to climate change using archetypal watershed modeling. Hydrology and Earth System Sciences Discussions 9:13729-13771.

Beegan, C., S.M. Bay. 2012. Transitioning sediment quality assessment into regulations: Challenges and solutions in implementing California's sediment quality objectives. Integrated Environmental Assessment and Management 8:586-588.

Thompson, B., S.B. Weisberg, A. Melwani, S. Lowe, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, R.J. Diaz, W. Fields, M. Kellogg, D.E. Montagne, P.R. Ode, D.J. Reish, P.N. Slattery. 2012. Low levels of agreement among experts using best professional judgment to assess benthic condition in the San Francisco Estuary and Delta. Ecological Indicators 12:167-173.

Green, L., M. Sutula, P. Fong. 2012. How much is too much? Identifying benchmarks of adverse effects of macroalgae on the macrobenthic community in estuarine intertidal flats. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 171-188. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sutula, M., L. Green, G. Cicchetti, N. Detenbeck, P. Fong. 2012. Thresholds of adverse effects of macroalgal abundance and sediment organic matter on benthic habitat quality in estuarine intertidal flats. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 189-210. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., L.L. Tiefenthaler, D.J. Greenstein, K.A. Maruya, S.M. Bay, K. Ritter, K.C. Schiff. 2012. Pyrethroids in southern California coastal sediments. Environmental Toxicology and Chemistry 31:1649-1656.

Greenstein, D.J., S.M. Bay. 2012. Selection of methods for assessing sediment toxicity in California bays and estuaries. Integrated Environmental Assessment and Management 8:625-637.

Forsgren, K.L., S.M. Bay, D.E. Vidal-Dorsch, X. Deng, G. Lu, J. Armstrong, J.R. Gully, D. Schlenk. 2012. Annual and seasonal evaluation of reproductive status of hornyhead turbot at municipal wastewater outfalls in the Southern California Bight. Environmental Toxicology and Chemistry 31:2701-2710.

Sapozhnikova, Y., E. Wirth, K.C. Schiff, M. Fulton. 2012. Antifouling biocides in water and sediments from California marinas. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 1-10. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication. Technical Report 711. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., F. Federico, D.B. Booth, B.P. Bledsoe, C. Bowles, Z. Rubin, G.M. Kondolf, A. Sengupta. 2012. Hydromodification Assessment and Management in California. Technical Report 667. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix A). Technical Report 711.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Howard, M.D.A., M. Sutula, D. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin, A. Sengupta. 2012. Comparison of natural and anthropogenic nutrient sources in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 29-48. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix B). Technical Report 711.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix C). Technical Report 711.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix D). Technical Report 711.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Nezlin, N.P., M. Sutula, R.P. Stumpf, A. Sengupta. 2012. Phytoplankton blooms detected by SeaWiFS along the central and southern California coast. Journal of Geophysical Research 117:C07004.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna. Technical Report 665. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., J. Gan. 2012. Enantioselective degradation of warfarin in soils. Chirality 24:54-59.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix A). Technical Report 665.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Setty, K. 2012. Adapting and Adopting Rapid Molecular Methods for Beach Water Quality Monitoring. Urban Coast 3:48-53.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix B). Technical Report 665.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Weisberg, S.B., K.E. Setty. 2012. Oceanic pollution. in: R.H. Friis (ed.), The Praeger Handbook of Environmental Health - Volume 1: Foundations of the Field pp. 133-154. ABC-CLIO, LLC. Santa Barbara, CA.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix C). Technical Report 665.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix D). Technical Report 665.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix E). Technical Report 665.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix F). Technical Report 665.F. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix G). Technical Report 665.G. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stancheva, R., A.E. Fetscher, R.G. Sheath. 2012. A novel quantification method for stream-inhabiting, non-diatom benthic algae, and its application in bioassessment. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 211-226. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stancheva, R., A.E. Fetscher, R.G. Sheath. 2012. A novel quantification method for stream-inhabiting, non-diatom benthic algae, and its application in bioassessment. Hydrobiologia 684:225-239.

Hammerstrom, K.K., J.A. Ranasinghe, S.B. Weisberg, J.S. Oliver, W.R. Fairey, P.N. Slattery, J.M. Oakden. 2012. Effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries. Integrated Environmental Assessment and Management 8:649-658.

Maraccini, P.A., D.M. Ferguson, A.B. Boehm. 2012. Diurnal variation in Enterococcus species composition in polluted ocean water and a potential role for the enterococcal carotenoid in protection against photoinactivation. Applied and Environmental Microbiology 78:305-310.

Dark, S., E.D. Stein, D. Bram, J. Osuna. 2012. Historical Ecology as a Living Resource for Informing Urban Wetland Restoration. Urban Coast 3:54-60.

Bledsoe, B.P., E.D. Stein, R.J. Hawley, D. Booth. 2012. Framework and tool for rapid assessment of stream susceptibility to hydromodification. Journal of the American Water Resources Association 48:788-808.

Maruya, K.A., P.F. Landrum, R.M. Burgess, J.P. Shine. 2012. Incorporating contaminant bioavailability into sediment quality assessment frameworks. Integrated Environmental Assessment and Management 8:659-673.

Stein, E.D., J.S. Brown, T.S. Hogue, M.P. Burke, A. Kinoshita. 2012. Stormwater contaminant loading following southern California wildfires. Environmental Toxicology and Chemistry 31:2625-2638.

Stein, E.D., J.S. Brown, T.S. Hogue, M.P. Burke, A. Kinoshita. 2012. Stormwater contaminant loading following wildfires. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 11-28. Southern California Coastal Water Research Project. Costa Mesa, CA.

Reyes, J.A., D.E. Vidal-Dorsch, D. Schlenk, S.M. Bay, J.L. Armstrong, J.R. Gully, C. Cash, M. Baker, T.D. Stebbins, G. Hardiman, K.M. Kelley. 2012. Evaluation of reproductive endocrine status in hornyhead turbot sampled from southern California's urbanized coastal environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 227-242. Southern California Coastal Water Research Project. Costa Mesa, CA.

Reyes, J.A., D.E. Vidal-Dorsch, D. Schlenk, S.M. Bay, J.L. Armstrong, J.R. Gully, C. Cash, M. Baker, T.D. Stebbins, G. Hardiman, K.M. Kelley. 2012. Evaluation of reproductive endocrine status in hornyhead turbot sampled from southern California's urbanized coastal environments. Environmental Toxicology and Chemistry 31:2689-2700.

Stein, E.D., B.P. White, R.D. Mazor, P.E. Miller, E.M. Pilgrim. 2012. Optimizing ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 243-252. Southern California Coastal Water Research Project. Costa Mesa, CA.

Anderson, P.D., N.D. Denslow, J.E. Drewes, A.W. Olivieri, D. Schlenk, G.I. Scott, S.A. Snyder. 2012. Monitoring Strategies for Chemicals of Emerging Concern (CECs) in California's Aquatic Ecosystems: Recommendations of a Science Advisory Panel. Technical Report 692. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Stein, E.D., M.R. Cover, A.E. Fetscher, C. O'Reilly, R. Guardado, C.W. Solek. 2012. Reach-scale geomorphic and biological effects of localized stream bank armoring. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 113-128. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fernandez, L.A., W. Lao, K.A. Maruya, C. White, R.M. Burgess. 2012. Passive sampling to measure background dissolved persistent organic pollutant concentrations in the water column of the Palos Verdes Shelf Superfund site. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 49-60. Southern California Coastal Water Research Project. Costa Mesa, CA.

Fernandez, L.A., W. Lao, K.A. Maruya, C. White, R.M. Burgess. 2012. Passive sampling to measure baseline dissolved persistent organic pollutant concentrations in the water column of the Palos Verdes shelf superfund site. Environmental Science and Technology 46:11937-11947.

Stein, E.D., L.G. Lackey. 2012. Technical Design for a Status & Trends Monitoring Program to Evaluate Extent and Distribution of Aquatic Resources in California. Technical Report 706. Southern California Coastal Water Research Project. Costa Mesa, CA.

Raimondi, P., K.C. Schiff, D. Gregorio. 2012. Characterization of the Rocky Intertidal Ecological Communities Associated with Southern California Areas of Special Biological Significance. Technical Report 703. Southern California Coastal Water Research Project. Costa Mesa, CA.

Goodwin, K.D., M. McNay, Y. Cao, D. Ebentier, M. Madison, J.F. Griffith. 2012. A multi-beach study of Staphylococcus aureus, MRSA, and enterococci in seawater and beach sand. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 357-373. Southern California Coastal Water Research Project. Costa Mesa, CA.

Colford Jr, J.M., K.C. Schiff, J.F. Griffith, V. Yau, B.F. Arnold, C.C. Wright, J.S. Gruber, T.J. Wade, S. Burns, J. Hayes, C. McGee, M. Gold, Y. Cao, R.T. Noble, R. Haugland, S.B. Weisberg. 2012. Using rapid indicators for Enterococcus to assess the risk of illness after exposure to urban runoff contaminated marine water. Water Research 46:2176-2186.

Goodwin, K.D., M. McNay, Y. Cao, D. Ebentier, M. Madison, J.F. Griffith. 2012. A multi-beach study of Staphylococcus aureus, MRSA, and enterococci in seawater and beach sand. Water Research 46:4195-4207.

Lao, W., K.A. Maruya, D. Tsukada. 2012. A two-component mass balance model for calibration of solid-phase microextraction fibers for pyrethroids in seawater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 85-98. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., K.A. Maruya, D. Tsukada. 2012. A two-component mass balance model for calibration of solid-phase microextraction fibers for pyrethroids in seawater. Analytical Chemistry 84:9362-9369.

Bao, L.J., K.A. Maruya, S.A. Snyder, E.Y. Zeng. 2012. China's water pollution by persistent organic pollutants. Environmental Pollution 163:100-108.

Resh, V.H., L.A. Beche, J.E. Lawrence, R.D. Mazor, E.P. McElravy, A.P. O'Dowd, D. Rudnick, S.M. Carlson. 2012. Long-term population and community patterns of benthic macroinvertebrates and fishes in northern California Mediterranean-climate streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 145-170. Southern California Coastal Water Research Project. Costa Mesa, CA.

Vidal-Dorsch, D.E., S.M. Bay, K.A. Maruya, S.A. Snyder, R.A. Trenholm, B.J. Vanderford. 2012. Contaminants of emerging concern in municipal wastewater effluents and marine receiving water. Environmental Toxicology and Chemistry 31:2674-2682.

Bay, S.M., D.E. Vidal-Dorsch. 2012. Determining the impacts of contaminants of emerging concern in marine ecosystems. Environmental Toxicology and Chemistry 31:2672-2673.

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, K.A. Maruya, J.R. Gully. 2012. Integrated coastal effects study: synthesis of findings. Environmental Toxicology and Chemistry 31:2711-2722.

Teixeira, H., S.B. Weisberg, A. Borja, J.A. Ranasinghe, D.B. Cadien, R.G. Velarde, L.L. Lovell, D. Pasko, C.A. Phillips, D.E. Montagne, K.J. Ritter, F. Salas, J.C. Marques. 2012. Calibration and validation of the AZTI's Marine Biotic Index (AMBI) for Southern California marine bays. Ecological Indicators 12:84-95.

Hawley, R.J., B.P. Bledsoe, E.D. Stein, B.E. Haines. 2012. Channel evolution model of semiarid stream response to urban-induced hydromodification. Journal of the American Water Resources Association 48:722-744.

Solek, C.W., M. Sutula, E.D. Stein, C. Roberts, R. Clark, K. O'Connor, K.J. Ritter. 2012. Determining the health of California's coastal salt marshes using rapid assessment. Wetland Science and Practice 29:8-28.

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, J.C. Wolf, D. Pham, A.V. Loguinov, C. Vulpe. 2012. Using gene expression to assess the status of fish from anthropogenically influenced estuarine wetlands. Environmental Science and Technology 46:69-77.

McQuaig, S., J.F. Griffith, V.J. Harwood. 2012. The association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 323-340. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hoh, E., N.G. Dodder, S.J. Lehotay, K.C. Pangallo, C.M. Reddy, K.A. Maruya. 2012. Nontargeted comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry method and software for inventorying persistent and bioaccumulative contaminants in marine environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 73-84. Southern California Coastal Water Research Project. Costa Mesa, CA.

McQuaig, S., J.F. Griffith, V.J. Harwood. 2012. Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Applied and Environmental Microbiology 78:6423-6432.

Hoh, E., N.G. Dodder, S.J. Lehotay, K.C. Pangallo, C.M. Reddy, K.A. Maruya. 2012. Nontargeted comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry method and software for inventorying persistent and bioaccumulative contaminants in marine environments. Environmental Science and Technology 46:8001-8008.

Sengupta, A., E.D. Stein, R.J. Hawley. 2012. General regression neural networks to estimate hydromodification response in semi-arid southern California streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 99-112. Southern California Coastal Water Research Project. Costa Mesa, CA.

Jenkins, S., J. Paduan, P. Roberts, D. Schlenk, J. Weis. 2012. Management of Brine Discharges to Coastal Waters: Recommendations of a Science Advisory Panel. Technical Report 694. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix E). Technical Report 661.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Thompson, B., J.A. Ranasinghe, S. Lowe, A. Melwani, S.B. Weisberg. 2011. Benthic macrofaunal assemblages of the San Francisco Estuary and Delta. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 163-176. Southern California Coastal Water Research Project. Costa Mesa, CA.

Greenstein, D.J., S.M. Bay, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K. Ritter, K.C. Schiff. 2011. Regional assessment of marine and estuarine sediment toxicity in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 237-247. Southern California Coastal Water Research Project. Costa Mesa, CA.

Miller, E.F., K.C. Schiff. 2011. Spatial distribution of Southern California Bight demersal fishes in 2008. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 271-284. Southern California Coastal Water Research Project. Costa Mesa, CA.

Griffith, J.F., S.B. Weisberg. 2011. Challenges in implementing new technology for beach water quality monitoring: Lessons from a California demonstration project. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 177-186. Southern California Coastal Water Research Project. Costa Mesa, CA.

Griffith, J.F., S.B. Weisberg. 2011. Challenges in implementing new technology for beach water quality monitoring: Lessons from a California demonstration project. Marine Technology Society Journal 45:65-73.

Ranasinghe, J.A., E.D. Stein, P.E. Miller, S.B. Weisberg. 2011. Relative performance of the Southern California Benthic Response Index using species abundance and presence-only data: Relevance to DNA Barcoding. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 297-303. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiefenthaler, L.L., E.D. Stein, K.C. Schiff. 2011. Levels and patterns of fecal indicator bacteria in stormwater runoff from homogenous land use sites and urban watersheds. Journal of Water and Health 9:279-290.

Converse, R.R., J.F. Griffith, R.T. Noble, R.A. Haugland, K.C. Schiff, S.B. Weisberg. 2011. Correlation between quantitative polymerase chain reaction and culture-based methods for measuring Enterococcus over various temporal scales and three California marine beaches. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 187-196. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates. Technical Report 655. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix B). Technical Report 655.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix D). Technical Report 655.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix A). Technical Report 655.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix C). Technical Report 655.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix E). Technical Report 655.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix F). Technical Report 655.F. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix G). Technical Report 655.G. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sabin, L.D., K.A. Maruya, W. Lao, D.W. Diehl, D. Tsukada, K.D. Stolzenbach, K.C. Schiff. 2011. A pilot study of air-water exchange of organochlorine compounds at three coastal estuaries in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 71-82. Southern California Coastal Water Research Project. Costa Mesa, CA.

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix H). Technical Report 655.H. Southern California Coastal Water Research Project. Costa Mesa, CA.

Dodder, N.G., K.A. Maruya, G.G. Lauenstein, J. Ramirez, K.J. Ritter, K.C. Schiff. 2011. Distribution and sources of polybrominated diphenyl ethers in the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 261-270. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., C.H. Wu, G.L. Andersen, P.A. Holden. 2011. Community analysis-based methods. in: C. Hagedorn, A. Blanch, V. Harwood (eds.), Microbial Source Tracking: Methods, Applications, and Case Studies pp. 251-282. Springer. New York, NY.

Maruya, K.A., D.E. Vidal-Dorsch, S.M. Bay, J.W. Kwon, K. Xia, K.L. Armbrust. 2011. Organic contaminants of emerging concern in sediments and flatfish collected near outfalls discharging treated municipal wastewater effluent to the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 365-373. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., L.C. Van De Werfhorst, B. Sercu, J.L.S. Murray, P.A. Holden. 2011. Application of an integrated community analysis approach for microbial source tracking in a coastal creek. Environmental Science and Technology 45:7195-7201.

Burke, M.P., T.S. Hogue, J. Barco, C. Wessel, A.Y. Kinoshita, E.D. Stein. 2011. Dynamics of pre- and post-fire pollutant loads in an urban fringe watershed. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 61-70. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., C.D. McGee, J.F. Griffith, S.B. Weisberg. 2011. Method repeatability for measuring Enterococcus in southern California beach sands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 207-211. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lu, J., H. Ryu, J.S. Domingo, J.F. Griffith, N. Ashbolt. 2011. Molecular detection of Campylobacter spp. in California Gull (Larus Californicus) excreta. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 213-221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., C.D. McGee, J.F. Griffith, S.B. Weisberg. 2011. Method repeatability for measuring Enterococcus in southern California beach sands. Letters in Applied Microbiology 53:656-659.

Lu, J., H. Ryu, J.W. Santo Domingo, J.F. Griffith, N. Ashbolt. 2011. Molecular detection of Campylobacter spp. in California gull (Larus californicus) excreta. Applied and Environmental Microbiology 77:5034-5039.

Beller, E., R. Grossinger, M. Salomon, S. Dark, E.D. Stein, B. Orr, P. Downs, T. Longcore, G. Coffman, A. Whipple, R. Askevold, B. Stanford, J. Beagle. 2011. Historical ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats. Technical Report 662. San Francisco Estuary Institute. Oakland, CA.

Liu, S., T. Hogue, E.D. Stein, J. Barco. 2011. Contemporary and Historical Hydrologic Analysis of the Ballona Creek Watershed. Technical Report 683. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hawley, R.J., B.P. Bledsoe, E.D. Stein. 2011. Hydromodification Effects on Flow Peaks and Durations in Southern California Urbanizing Watersheds. Technical Report 654. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., D.J. Gillett, K.C. Schiff, K. Ritter, E.D. Stein. 2011. Ecological Condition of Watersheds in Coastal Southern California: Progress Report of the Stormwater Monitoring Coalition's Stream Monitoring Program First Year (2009). Technical Report 639. Southern California Coastal Water Research Project. Costa Mesa, CA.

Borja, A., A. Basset, S. Bricker, J.-C. Dauvin, M. Elliott, T. Harrison, J.-C. Marques, S.B. Weisberg, R. West. 2011. Classifying ecological quality and integrity of estuaries. in: E. Wolanski, D.S. McLusky (eds.), Treatise on Estuarine and Coastal Science: Volume 1 pp. 125-162. Academic Press. Waltham, MA.

McKee, L., M. Sutula, A. Gilbreath, J. Beagle, D. Gluchowski, J. Hunt. 2011. Numeric Nutrient Endpoint Development for San Francisco Bay Estuary: Literature Review and Data Gaps Analysis. Technical Report 644. Southern California Coastal Water Research Project. Costa Mesa, CA.

Grossinger, R., E.D. Stein, K. Cayce, R. Askevold, S. Dark, A. Whipple. 2011. Historical Wetlands of the Southern California Coast: An Atlas of US Coast Survey T-sheets, 1851-1889. Technical Report 589. San Francisco Estuary Institute. Richmond, CA.

Bay, S.M., D.J. Greenstein, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K.J. Ritter, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: I. Sediment Toxicity. Technical Report 640. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in Buena Vista Lagoon, Carlsbad, California. Technical Report 638. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in Loma Alta Slough, Oceanside, California. Technical Report 630. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in San Elijo Lagoon, Encinitas, California. Technical Report 636. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ross, M.S., E.L. Pulster, M.B. Ejsmont, E.A. Chow, C.M. Hessel, K.A. Maruya, C. Wong. 2011. Enantioselectivity of polychlorinated biphenyl atropisomers in sediment and biota from the Turtle/Brunswick River estuary, Georgia, USA. Marine Pollution Bulletin 63:548-55.

Lao, W., L.L. Tiefenthaler, D.J. Greenstein, K.A. Maruya, S.M. Bay, K. Ritter, K.C. Schiff. 2011. Pyrethroids in southern California coastal sediments. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 249-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Greenstein, D.J., S.M. Bay. 2011. Selection of methods for assessing sediment toxicity in California bays and estuaries. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 119-136. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., K. Vyverberg, G.M. Kondolf, K. Janes. 2011. Episodic Stream Channels: Imperatives for Assessment and Environmental Planning in California - Proceedings of a Special Technical Workshop. Technical Report 645. Southern California Coastal Water Research Project. Costa Mesa, CA.

Forsgren, K.L., S.M. Bay, D.E. Vidal-Dorsch, X. Deng, G. Lu, J. Armstrong, J.R. Gully, D. Schlenk. 2011. Annual and seasonal evaluation of reproductive status in hornyhead turbot at municipal wastewater outfalls in the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 375-388. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gregory, J.B., L.F. Webster, J.F. Griffith, J.R. Stewart. 2011. Improved detection and quantitation of norovirus from water. Journal of Virological Methods 172:38-45.

Brown, J.S., S.M. Bay. 2011. Temporal Assessment of Chemistry, Toxicity and Benthic Communities in Sediments at the Mouths of Chollas Creek and Paleta Creek, San Diego Bay. Technical Report 668. Southern California Coastal Water Research Project. Costa Mesa, CA.

Nezlin, N.P., M. Sutula, R.P. Stumpf, A. Sengupta. 2011. Phytoplankton blooms detected by SeaWiFS along the central and southern California coast. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 305-322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Dark, S., E.D. Stein, D. Bram, J. Osuna, J. Monteferante, T. Longcore, R. Grossinger, E. Beller. 2011. Historical Ecology of the Ballona Creek Watershed. Technical Report 671. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bernstein, B., K. Merkel, B. Chesney, M. Sutula. 2011. Recommendations for a Southern California Regional Eelgrass Monitoring Program. Technical Report 632. Southern California Coastal Water Research Project. Costa Mesa, CA.

Solek, C.W., E.D. Stein, M. Sutula. 2011. Demonstration of an integrated watershed assessment using a three-tiered assessment framework. Wetlands Ecology and Management 19:459-474.

Lyon, G.S., M. Sutula. 2011. Effluent discharges to the Southern California Bight from large municipal wastewater treatment facilities from 2005 to 2009. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 223-236. Southern California Coastal Water Research Project. Costa Mesa, CA.

Maraccini, P.A., D.M. Ferguson, A.B. Boehm. 2011. Diurnal variation in Enterococcus species composition in polluted ocean water: A potential role for the enterococcal carotenoid in protection against photoinactivation. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 197-206. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sutula, M. 2011. Review of Indicators for Development of Nutrient Numeric Endpoints in California Estuaries. Technical Report 646. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., E.D. Stein, R.J. Hawley, D. Booth. 2011. Framework and tool for rapid assessment of stream susceptibility to hydromodification. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 25-47. Southern California Coastal Water Research Project. Costa Mesa, CA.

Greenstein, D.J., S.M. Bay, D. Young. 2011. Sediment Toxicity Identification Evaluation for the Mouths of Chollas and Paleta Creeks, San Diego. Technical Report 669. Southern California Coastal Water Research Project. Costa Mesa, CA.

McLaughlin, K., J.A. Sohm, G.A. Cutter, M.W. Lomas, A. Paytan. 2011. Phosphorus cycling in the Sargasso Sea: Investigation using the oxygen isotopic composition of phosphate, enzyme labeled fluorescence, and turnover times. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 323-334. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., L.L. Tiefenthaler. 2011. Seasonal flushing of pollutant concentrations and loads in urban stormwater. Journal of the American Water Resources Association 47:136-142.

Schiff, K.C., B. Luk, D. Gregorio. 2011. Impact of stormwater discharges to water quality in California's areas of special biological significance. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 285-295. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., M. Cover, C. O'Reilly, J.J. Hayes, A.E. Fetscher, R. Ambrose, L.S. Fong, R. Guardado, C. Solek, G.M. Kondolf, C. Alford, C. Zuri. 2011. Evaluation of Stream Condition Indicators for Determining Effects of Direct Hydromodification via Stream Bank Armoring. Technical Report 643. Southern California Coastal Water Research Project. Costa Mesa, CA.

Vidal-Dorsch, D.E., S.M. Bay, K.A. Maruya, S.A. Snyder, R.A. Trenholm, B.J. Vanderford. 2011. Contaminants of emerging concern in municipal wastewater effluents and marine receiving water. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 351-364. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., J.R. Gully, D.J. Greenstein, P.J. Markle, J.A. Ranasinghe. 2011. Relationship of sediment toxicity to benthic community impacts and water body management decisions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 137-148. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2011. Assessing water quality in Marine Protected Areas from Southern California, USA. Marine Pollution Bulletin 62:2780-2786.

Brown, J.S., E.D. Stein, D. Ackerman, J.H. Dorsey, J. Lyon, P.M. Carter. 2011. Metals and bacteria partitioning to various size particles in Ballona Creek stormwater runoff. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 48-60. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2011. Southern California Bight 2008 Regional Monitoring Program: II. Areas of Special Biological Significance. Technical Report 641. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, K.A. Maruya, J.R. Gully. 2011. Integrated coastal effects study: Synthesis of findings. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 335-350. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, M.E. Baker, K.A. Maruya, J.R. Gully. 2011. Sources and Effects of Endocrine Disruptors and other Contaminants of Emerging Concern in the Southern California Bight Coastal Ecosystem. Technical Report 650. Southern California Coastal Water Research Project. Costa Mesa, CA.

Jacobs, D.K., E.D. Stein, T. Longcore. 2011. Classification of California estuaries based on natural closure patterns: Templates for restoration and management (Revised). Technical Report 619.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Teixeira, H., S.B. Weisberg, A. Borja, J.A. Ranasinghe, D.B. Cadien, R.G. Velarde, L.L. Lovell, D. Pasko, C.A. Phillips, D.E. Montagne, K.J. Ritter, F. Salas, J.C. Marques. 2011. Calibration and validation of the AZTI's Marine Biotic Index (AMBI) for southern California marine bays. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 99-118. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hawley, R.J., B.P. Bledsoe, E.D. Stein, B.E. Haines. 2011. Channel evolution model of response to urbanization in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 1-24. Southern California Coastal Water Research Project. Costa Mesa, CA.

Solek, C.W., M. Sutula, E.D. Stein, C. Roberts, R. Clark, K. O'Connor, K.J. Ritter. 2011. Determining the health of California's coastal salt marshes using rapid assessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 83-97. Southern California Coastal Water Research Project. Costa Mesa, CA.

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, J. Wolf, D. Pham, A.V. Loguinov, C. Vulpe. 2011. Using gene expression to assess the status of fish from anthropogenically influenced estuarine wetlands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 149-162. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ackerman, D., E.D. Stein, K.J. Ritter. 2011. Evaluating performance of stormwater sampling approaches using a dynamic watershed model. Environmental Monitoring and Assessment 180:283-302.

Hagedorn, C., S.B. Weisberg. 2011. Chemical-Based Fecal Source Tracking Methods. in: C. Hagedorn, A.R. Blanch, V.J. Harwood (eds.), Microbial Source Tracking: Methods, Applications, and Case Studies pp. 189-206. Springer. Basingstoke, UK.

Boehm, A.B., K.M. Yamahara, S.P. Walters, B.A. Layton, D.P. Keymer, R.S. Thompson, K.L. Knee, M. Rosener. 2011. Dissolved inorganic nitrogen, soluble reactive phosphorous, and microbial pollutant loading from tropical rural watersheds in Hawai'i to the coastal ocean during non-storm conditions. Estuaries and Coasts 34:925-936.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry. Technical Report 661. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix A). Technical Report 661.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix B). Technical Report 661.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix C). Technical Report 661.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix D). Technical Report 661.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hamilton, M.J., A.Z. Hadi, J.F. Griffith, S. Ishii, M.J. Sadowsky. 2010. Large scale analysis of virulence genes in Escherichia coli strains isolated from Avalon Bay, CA. Water Research 44:5463-5473.

Lao, W., D. Tsukada, D.J. Greenstein, S.M. Bay, K.A. Maruya. 2010. Analysis, occurrence, and toxic potential of pyrethroids, and fibronil in sediments from an urban estuary. Environmental Toxicology and Chemistry 29:843-851.

Dickson, A., R. Gossett, D. Gregorio, B. Jones, S. Murray, B. Posthumus, K.C. Schiff. 2010. Summation of Findings Natural Water Quality Committee 2006-2009. Technical Report 625. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ferguson, D.M., J.F. Griffith, C.D. McGee, S.B. Weisberg. 2010. Comparison of Enterococcus species selectivity using Enterolert and EPA Method 1600. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 67-73. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gillett, D.J., D.J. Pondella II, K.C. Schiff, J. Freiwald, J.E. Casselle, C. Shuman, S.B. Weisberg. 2010. Comparing volunteer and professionally collected monitoring data from subtidal rocky reefs in southern California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 219-237. Southern California Coastal Water Research Project. Costa Mesa, CA.

Setty, K.E., K.C. Schiff, J.R. Gully, S.B. Weisberg. 2010. Evolution of monitoring program design for marine outfalls in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 1-13. Southern California Coastal Water Research Project. Costa Mesa, CA.

Thompson, B., S.B. Weisberg, A.M.e.l.w.a.n.i. , S. Lowe, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, R.J. Diaz, W. Fields, M. Kellogg, D.E. Montagne, P.R. Ode, D.J. Reish, P.N. Slattery. 2010. Levels of agreement among experts using Best Professional Judgment to assess mesohaline and tidal freshwater benthic macrofaunal condition in the San Francisco Estuary and Delta. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 177-185. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mika, K.B., G. Imamura, C. Chang, V. Conway, G. Fernandez, J.F. Griffith, R.A. Kampalath, a.n.d. CM Lee, C.-C. Lin, R. Moreno, S. Thompson, R.L. Whitman, J.A. Jay. 2010. Pilot- and bench-scale testing of fecal indicator bacteria survival in marine beach sand near point sources. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 87-101. Southern California Coastal Water Research Project. Costa Mesa, CA.

Noble, R.T., A.D. Blackwood, J.F. Griffith, C.D. McGee, S.B. Weisberg. 2010. Comparison of rapid quantitative PCR-based and conventional culture-based methods for enumeration of Enterococcus spp. and Escherichia coli in recreational waters. Applied and Environmental Microbiology 76:7437-7443.

Sabin, L.D., K.A. Maruya, W. Lao, D.W. Diehl, D. Tsukada, K.D. Stolzenbach, K.C. Schiff. 2010. Exchange of polycyclic aromatic hydrocarbons among the atmosphere, water, and sediment in coastal embayments of southern California, USA. Environmental Toxicology and Chemistry 29:265-274.

Lyon, G.S., E.D. Stein. 2010. Effluent discharges from offshore oil platforms to the outer continental shelf of southern California in 2005. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 29-43. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lyon, G.S., E.D. Stein. 2010. Effluent discharges to the Southern California Bight from power generating stations in 2005. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 15-28. Southern California Coastal Water Research Project. Costa Mesa, CA.

Gossett, R., K.C. Schiff. 2010. Stormwater Monitoring Coalition Laboratory Guidance Document (Third Edition). Technical Report 615. Southern California Coastal Water Research Project. Costa Mesa, CA.

Teixeira, H., A. Borja, S.B. Weisberg, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, J.-C. Dauvin, S. Degraer, R.J. Diaz, A. Gremare, I. Karakassis, R.J. Llanso, L.L. Lovell, J.C. Marques, D.E. Montagne, A. Occhipinti-Ambrogi, R. Rosenberg, R. Sarda, L.C. Schaffner, R.G. Velarde. 2010. Assessing coastal benthic macrofauna community condition using best professional judgement - Developing consensus across North America and Europe. Marine Pollution Bulletin 60:589-600.

Nezlin, N.P., I.G. Polikarpov, F.Y. Al-Yamani, D.V. Subba Rao, A.M. Ignatov. 2010. Satellite monitoring of climatic factors regulating phytoplankton variability in the Arabian (Persian) Gulf. Journal of Marine Systems 82:47-60.

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2010. Eutrophication and Nutrient Cycling in Famosa Slough: A Summary of Baseline Data for Monitoring Order R9-2006-0076. Technical Report 629. Southern California Coastal Water Research Project. Costa Mesa, CA.

Boerger, C.M., G.L. Lattin, S.L. Moore, C.J. Moore. 2010. Plastic ingestion by planktivorous fishes in the North Pacific Central Gyre. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 281-285. Southern California Coastal Water Research Project. Costa Mesa, CA.

Boerger, C.M., G.L. Lattin, S.L. Moore, C.J. Moore. 2010. Plastic ingestion by planktivorous fishes in the North Pacific Gyre. Marine Pollution Bulletin 60:2275-2278.

Johnston, C., J.A. Unfar, J.F. Griffith, J.A. Gooch, J.R. Stewart. 2010. A real-time qPCR assay for the detection of the nifH gene of Methanobrevibater smithii, a potential indicator of sewage pollution. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 127-138. Southern California Coastal Water Research Project. Costa Mesa, CA.

Johnston, C., J.A. Ufnar, J.F. Griffith, J.A. Gooch, J.R. Stewart. 2010. A real-time qPCR assay for the detection of the nifH gene of Methanobrevibater smithii, a potential indicator of sewage pollution. Journal of Applied Microbiology 109:1946-1956.

Gregory, J.B., L.F. Webster, J.F. Griffith, J.R. Stewart. 2010. Improved detection and quantification of norovirus from water. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 139-152. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lee, C.M., J.F. Griffith, W. Kaiser, J.A. Jay. 2010. Covalently-linked immunomagnetic separation/adenosine triphosphate technique (Cov-IMS/ATP) enables rapid, in-field detection and quantification of Escherichia coli and Enterococcus spp. in freshwater and marine environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 75-85. Southern California Coastal Water Research Project. Costa Mesa, CA.

Griffith, J.F., K.C. Schiff, G.S. Lyon, J.A. Fuhrman. 2010. Microbiological water quality at non-human influenced reference beaches in southern California during wet weather. Marine Pollution Bulletin 60:500-508.

Lee, C.M., J.F. Griffith, W. Kaiser, J.A. Jay. 2010. Covalently-linked immunomagnetic separation/adenosine triphosphate technique (Cov-IMS/ATP) enables rapid, in-field detection and quantification of Escherichia coli and Enterococcus spp. in freshwater and marine environments. Journal of Applied Microbiology 109:324-333.

Lao, W., J. Gan. 2010. Characterization of warfarin unusual peak profiles on oligoproline chiral high performance liquid chromatography columns. Journal of Chromatography A 1217:6545-6554.

Lao, W., J. Gan. 2010. Temperature effects on a doubly tethered diproline chiral stationary phase: Hold-up volume, enantioselectivity and robustness. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 57-66. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., J. Gan. 2010. Temperature effects on a doubly tethered diproline chiral stationary phase: Hold-up volume, enantioselectivity and robustness. Journal of Separation Science 33:3052-3059.

Fetscher, A.E., M. Sutula, J.C. Callaway, V.T. Parker, M.C. Vasey, J.N. Collins, W.G. Nelson. 2010. Patterns in estuarine vegetation communities in two regions of California: Insights from a probabilistic survey. Wetlands 30:833-846.

Stein, E.D., S. Dark, T. Longcore, R. Grossinger, N. Hall, M. Beland. 2010. Historical ecology as a tool for assessing landscape change and informing wetland restoration priorities. Wetlands 30:589-601.

Halliday, E., J.F. Griffith, R.J. Gast. 2010. Use of an exogenous plasmid standard and quantitative PCR to monitor spatial and temporal distribution of Enterococcus spp. in beach sands. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 103-112. Southern California Coastal Water Research Project. Costa Mesa, CA.

Halliday, E., J.F. Griffith, R.J. Gast. 2010. Use of an exogenous plasmid standard and quantitative PCR to monitor spatial and temporal distribution of Enterococcus spp. in beach sands. Limnology and Oceanography: Methods 8:146-154.

Hammerstrom, K.K., J.A. Ranasinghe, S.B. Weisberg, J.S. Oliver, W.R. Fairey, P.N. Slattery, J.M. Oakden. 2010. The effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 187-198. Southern California Coastal Water Research Project. Costa Mesa, CA.

Mazor, R.D., K.C. Schiff, K. Ritter, A. Rehn, P. Ode. 2010. Bioassessment tools in novel habitats: An evaluation of indices and sampling methods in low-gradient streams in California. Environmental Monitoring and Assessment 167:91-104.

Booth, D.B., S.R. Dusterhoff, E.D. Stein, B.P. Bledsoe. 2010. Hydromodification Screening Tools: GIS-based catchment analyses of potential changes in runoff and sediment discharge. Technical Report 605. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field Manual (Appendix A). Technical Report 606.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field Manual (Appendix B). Technical Report 606.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, D. Schlenk, K.M. Kelley. 2010. Biological responses of marine flatfish exposed to effluent. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 239-250. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field manual for assessing channel susceptibility. Technical Report 606. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix A). Technical Report 607.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix B). Technical Report 607.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Maruya, K.A., P.F. Landrum, R.M. Burgess, J.P. Shine. 2010. Incorporating contaminant bioavailability into sediment quality assessment frameworks. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 153-175. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix C). Technical Report 607.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical basis for development of a field screening tool for assessing channel susceptibility to hydromodification. Technical Report 607. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ranasinghe, J.A., K.C. Schiff, D.E. Montagne, T.K. Mikel, D.B. Cadien, R.G. Velarde, C.A. Brantley. 2010. Benthic macrofaunal community condition in the Southern California Bight, 1994-2003. Marine Pollution Bulletin 60:827-833.

Svejkovsky, J., N.P. Nezlin, N.M. Mustain, J.B. Kum. 2010. Tracking stormwater discharge plumes and water quality of the Tijuana River with multispectral aerial imagery. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 261-280. Southern California Coastal Water Research Project. Costa Mesa, CA.

Svejkovsky, J., N.P. Nezlin, N.M. Mustain, J.B. Kum. 2010. Tracking stormwater discharge plumes and water quality of the Tijuana River with multispectral aerial imagery. Estuarine, Coastal and Shelf Science 87:387-398.

Ramezani, M.K., D.P. Oliver, R.S. Kookana, W. Lao, G. Gill, C. Preston. 2010. Faster degradation of herbicidally-active enantiomer of imidazolinones in soils. Chemosphere 79:1040-1045.

Schiff, K.C., B. Luk, D. Gregorio. 2010. Status of California's Marine Water Quality Protected Areas. Technical Report 631. Southern California Coastal Water Research Project. Costa Mesa, CA.

Brown, J.S., M. Sutula, C. Stransky, J. Rudolph, E. Byron. 2010. Sediment contaminant chemistry and toxicity of freshwater in urban wetlands in southern California. Journal of the American Water Resources Association 46:367-384.

Bay, S.M., D.J. Greenstein, K.A. Maruya, W. Lao. 2010. Toxicity Identification Evaluation of Sediment (Sediment TIE) in Ballona Creek Estuary: Final Report. Technical Report 634. Southern California Coastal Water Research Project. Costa Mesa, CA.

Harmful Algal Bloom Monitoring and Alert Program (HABMAP) Working Group. 2010. The Second Regional Workshop for Harmful Algal Blooms (HABs) in California Coastal Waters. Technical Report 620. Southern California Coastal Water Research Project. Costa Mesa, CA.

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2010. Assessing water quality conditions in southern California's areas of special biological significance. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 251-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lawrence, J.E., K.B. Lunde, R.D. Mazor, L.A. Beche, E.P. McElravy, V.H. Resh. 2010. Long-term macroinvertebrate responses to climate change: Implications for biological assessment in Mediterranean-climate streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 199-217. Southern California Coastal Water Research Project. Costa Mesa, CA.

Jacobs, D., E.D. Stein, T. Longcore. 2010. Classification of California estuaries based on natural closure patterns: Templates for restoration and management. Technical Report 619. Southern California Coastal Water Research Project. Costa Mesa, CA.

Integrated Ocean Observing Systems and California Sea Grant and USC Sea Grant and Oregon Sea Grant and Washington Sea Grant and California Ocean Science Trust and Southern California Coastal Water. 2010. Ocean Acidification Impacts on Shellfish Workshop: Findings and Recommendations. Technical Report 624. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sayre, J.M., R.G. Adams, W. Lao, K.A. Maruya. 2010. Comparing solid phase microextraction and polyethylene passive samplers for measuring ultra-low aqueous concentrations of regulated organic pollutants. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 45-56. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hamilton, M.J., A.Z. Hadi, J.F. Griffith, M.J. Sadowsky. 2010. Large scale analysis of virulence genes in Escherichia coli strains isolated from Avalon Bay, CA. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 113-125. Southern California Coastal Water Research Project. Costa Mesa, CA.

2009. Assessing coastal benthic macrofauna community condition using best professional judgement: Developing consensus across North America and Europe. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 43-59. Southern California Coastal Water Research Project. Costa Mesa, CA.

2009. Bioassessment tools in novel habitats: An evaluation of indices and sampling methods in low-gradient streams in California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 61-74. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lao, W., D. Tsukada, D.J. Greenstein, S.M. Bay, K.A. Maruya. 2009. Analysis, occurrence, and toxic potential of pyrethroids and fipronil in sediments from the Ballona Creek estuary. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 277-289. Southern California Coastal Water Research Project. Costa Mesa, CA.

Hagedorn, C., S.B. Weisberg. 2009. Chemical-based fecal source tracking methods: current status and guidelines for evaluation. Reviews in Environmental Science and Biotechnology 8:275-287.

Meng, X.Z., M.E. Blasius, R.W. Gossett, K.A. Maruya. 2009. Polybrominated diphenyl ethers in pinnipeds stranded along the southern California coast. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 263-276. Southern California Coastal Water Research Project. Costa Mesa, CA.

Meng, X.-Z., M.E. Blasius, R.W. Gossett, K.A. Maruya. 2009. Polybrominated diphenyl ethers in pinnipeds stranded along the southern California coast. Environmental Pollution 157:2731.

Schiff, K.C., J. Diamond. 2009. Identifying barriers to Tiered Aquatic Life Uses (TALU) in southern California. Technical Report 590. Southern California Coastal Water Research Project. Costa Mesa, CA.

Griffith, J.F., Y. Cao, C.D. McGee, S.B. Weisberg. 2009. Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 223-233. Southern California Coastal Water Research Project. Costa Mesa, CA.

Griffith, J.F., Y. Cao, C.D. McGee, S.B. Weisberg. 2009. Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality. Water Research 43:4900-4907.

Boehm, A.B., N.J. Ashbolt, J.M. Colford, J.r. , L.E. Dunbar, L.E. Fleming, M.A. Gold, J.A. Hansel, P.R. Hunter, A.M. Ichida, C.D. McGee, J.A. Soller, S.B. Weisberg. 2009. A sea change ahead for recreational water quality criteria. Journal of Water and Health 7:9-20.

Maruya, K.A., K.C. Schiff. 2009. The extent and magnitude of sediment contamination in the Southern California Bight. The Geological Society of America 454:399-412.

Noble, R.T., A.D. Blackwood, J.F. Griffith, C.D. McGee, S.B. Weisberg. 2009. Comparison of rapid QPCR-based and culture-based methods for enumeration of Enterococcus sp. and Escherichia coli in recreational waters. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 211-221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lyon, G.S., E.D. Stein. 2009. Effluent discharges to the Southern California Bight from industrial facilities in 2005. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 15-29. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lyon, G.S., E.D. Stein. 2009. How effective has the Clean Water Act been at reducing pollutant mass emissions to the Southern California Bight over the past 35 years?. Environmental Monitoring and Assessment 154:413-426.

Brown, J.S., D. Ackerman, E.D. Stein. 2009. Continuous in situ characterization of particulate sizes in urban stormwater: Method testing and refinement. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 183-193. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ode, P., K.C. Schiff. 2009. Recommendations for the development and maintenance of a reference condition management program (RCMP) to support biological assessment of California. Technical Report 581. Southern California Coastal Water Research Project. Costa Mesa, CA.

Cao, Y., J.F. Griffith, S.B. Weisberg. 2009. Evaluation of optical brightener photodecay characteristics for detection of human fecal contamination. Water Research 43:2273-2279.

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual. Technical Report 582. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix A). Technical Report 582.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Nezlin, N.P., K. Kamer, J. Hyde, E.D. Stein. 2009. Dissolved oxygen dynamics in a eutrophic estuary, Upper Newport Bay, California. Estuarine, Coastal and Shelf Science 82:139-151.

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix B). Technical Report 582.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix C). Technical Report 582.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix D). Technical Report 582.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Maruya, K.A., E.Y. Zeng, D. Tsukada, S.M. Bay. 2009. A passive sampler based on solid-phase microextraction for quantifying hydrophobic organic contaminants in sediment pore water. Environmental Toxicology and Chemistry 28:733-740.

Lao, W., J. Gan. 2009. Doubly tethered tertiary amide linked and ionically bonded diproline chiral stationary phases. Journal of Separation Science 32:2359-2368.

Lao, W., J. Gan. 2009. Evaluation of triproline and tri-a-methylproline chiral stationary phases retention and enantioseparation associated with hydrogen bonding. Journal of Chromatography A 1216:5020-5029.

Fetscher, A.E., M. Sutula, J.C. Callaway, V.T. Parker, M. Vasey, J.N. Collins, W.G. Nelson. 2009. Patterns in vegetation communities of estuarine wetlands in two California regions: Insights from a probabilistic survey. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 127-144. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., S. Dark, T. Longcore, R. Grossinger, N. Hall, M. Beland. 2009. Historical ecology as a tool for assessing landscape change and wetland restoration priorities. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 145-160. Southern California Coastal Water Research Project. Costa Mesa, CA.

Ackerman, D., N.P. Nezlin. 2009. Suspended particle dynamics in a southern California urban estuary during the dry season. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 97-108. Southern California Coastal Water Research Project. Costa Mesa, CA.

Kwon, J.W., K.L. Armbrust, D.E. Vidal-Dorsch, S.M. Bay, K. Xia. 2009. Determination of 17α-ethynylestradiol, carbamazepine, diazepam, simvastatin, and oxybenzone in fish livers. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 291-303. Southern California Coastal Water Research Project. Costa Mesa, CA.

Kwon, J.-W., K.L. Armbrust, D. Vidal-Dorsch, S.M. Bay, K. Xia. 2009. Determination of 17 alpha-ethynylestradiol, carbamazepine, diazepam, simvastatin, and oxybenzone in fish livers. Journal of AOAC International 92:359-369.

Converse, R.R., A.D. Blackwood, M. Kirs, J.F. Griffith, R.T. Noble. 2009. Rapid qPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. Water Research 43:4828-4837.

Solek, C.W., E.D. Stein, M. Sutula. 2009. Demonstration of an integrated watershed assessment using a three-tiered assessment framework. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 109-126. Southern California Coastal Water Research Project. Costa Mesa, CA.

Reifel, K.M., S.C. Johnson, P.M. DiGiacomo, M.J. Mengel, N.P. Nezlin, J.A. Warrick, B.H. Jones. 2009. Impacts of stormwater runoff in the Southern California Bight: Relationships among plume constituents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 161-181. Southern California Coastal Water Research Project. Costa Mesa, CA.

Reifel, K.M., S.C. Johnson, P.M. DiGiacomo, M.J. Mengel, N.P. Nezlin, J.A. Warrick, B.H. Jones. 2009. Impacts of stormwater runoff in the Southern California Bight: Relationships among plume constituents. Continental Shelf Research 29:1821-1835.

Fetscher, A.E., L. Busse, P.R. Ode. 2009. Standard Operating Procedures for Collecting Stream Algae Samples and Associated Physical Habitat and Chemical Data for Ambient Bioassessments in California. Technical Report 602. California State Water Resources Control Board Surface Water Ambient Monitoring Program (SWAMP). Sacramento, CA.

Boehm, A.B., J.F. Griffith, C.D. McGee, T.A. Edge, H.M. Solo-Gabriele, R. Whitman, Y. Cao, M. Getrich, J.A. Jay, D. Ferguson, K.D. Goodwin, C.M. Lee, M. Madison, S.B. Weisberg. 2009. Fecal indicator bacteria (FIB) enumeration in beach sand: A comparison study of FIB extraction methods in medium to coarse sands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 249-261. Southern California Coastal Water Research Project. Costa Mesa, CA.

Boehm, A.B., J.F. Griffith, C.D. McGee, T.A. Edge, H.M. Solo-Gabriele, R. Whitman, Y. Cao, M. Getrich, J.A. Jay, D. Ferguson, K.D. Goodwin, C.M. Lee, M. Madison, S.B. Weisberg. 2009. Fecal indicator bacteria enumeration in beach sand: A comparison study of FIB extraction methods in medium to coarse sands. Journal of Applied Microbiology 107:1740-1750.

Ranasinghe, J.A., K.C. Schiff, D.E. Montagne, T.K. Mikel, D.B. Cadien, R.G. Velarde, C.A. Brantley. 2009. Benthic macrofaunal community condition in the Southern California Bight, 1994-2003. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 31-42. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., J.S. Brown. 2009. Effects of post-fire runoff on surface water quality: Development of a southern California regional monitoring program with management questions and implementation recommendations. Technical Report 598. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., J.S. Brown. 2009. Effects of post-fire runoff on surface water quality: Development of a southern California regional monitoring program with management questions and implementation recommendations (Appendix A). Technical Report 598.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Lea, R.N., M.J. Allen, W. Power. 2009. Records of the Pacific Bearded Brotula, Brotula clarkae, from Southern California. Bulletin of the Southern California Academy of Sciences 108:163-167.

California Ocean Science Trust and National Water Research Institute and San Francisco Estuary Institute and Southern California Coastal Water Research Project. 2009. Workshop Report - Managing contaminants of emerging concern in California: Developing processes for prioritizing, monitoring, and determining thresholds of concern. Technical Report 600. National Water Research Institute. Fountain Valley, CA.

Converse, R.R., A.D. Blackwood, M. Kirs, R.T. Noble, J.F. Griffith. 2009. Rapid QPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 235-247. Southern California Coastal Water Research Project. Costa Mesa, CA.

Sutula, M., K. Kamer, J. Cable. 2009. The importance of benthic nutrient flux in supporting eutrophication in an intermittently tidal coastal lagoon. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 75-95. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., D.B. Cadien. 2009. Ecosystem response to regulatory and management actions: The southern California experience in long-term monitoring. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 1-14. Southern California Coastal Water Research Project. Costa Mesa, CA.

Stein, E.D., D.B. Cadien. 2009. Ecosystem response to regulatory and management actions: The southern California experience in long-term monitoring. Marine Pollution Bulletin 59:91-100.

Stein, E.D., A.E. Fetscher, R.P. Clark, A. Wiskind, J.L. Grenier, M. Sutula, J.N. Collins, C. Grosso. 2009. Validation of a wetland rapid assessment method: Use of EPA's Level 1-2-3 Framework for method testing and refinement. Wetlands 29:648-665.

Baker, M.E., B. Ruggeri, L.J. Sprague, C. Eckhardt-Ludka, J. Lapira, I. Wick, L. Soverchia, M. Ubaldi, A.M. Polzonetti-Magni, D. Vidal-Dorsch, M. Bay, J.R. Gullye, J.A. Reyes, K.M. Kelley, D. Schlenk, E.C. Breen, R. Sasik, G. Hardiman. 2009. Analysis of endocrine disruption in southern California coastal fish using an aquatic multispecies microarray. Environmental Health Perspectives 117:223-230.

Mazor, R.D., A.H. Purcell, V.H. Resh. 2009. Long-term variability in bioassessments: A twenty-year study from two northern California streams. Environmental Management 43:1269-1286.

Ackerman, D., E.D. Stein, K.J. Ritter. 2009. Evaluating stormwater sampling approaches using a dynamic watershed model. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 195-210. Southern California Coastal Water Research Project. Costa Mesa, CA.

Tiefenthaler, L.L., E.D. Stein, G.S. Lyon. 2009. Fecal indicator bacteria (FIB) levels during dry weather from southern California reference streams. Environmental Monitoring and Assessment 155:477-492.