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All SCCWRP Publications

PublicationPub. TypePub. YearSCCWRP Pub. #Related Topic Areas

Schiff, K.C., J.F. Griffith, J.A. Steele, A. Gonzalez-Fernandez. 2024. Summary of Technical Research: Quantifying Sources of Human Fecal Pollution in the Lower San Diego River Watershed. Technical Report 1380. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20241380Microbial Risk Assessment, Microbial Source Tracking

Wong, C.S., S. Dial, W. Lao. 2024. Stormwater Monitoring Coalition Laboratory Guidance Document (Fourth Edition). Technical Report 1379. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20241379Regional Monitoring, Southern California Stormwater Monitoring Coalition

Wang, P., J. Li, M.Y. Xie, C.C. Wu, C.S. Wong, E.Y. Zeng. 2024. Utility of a modified o-DGT passive sampler for measurement of bisphenol analogues in freshwater and coastal waters. Science of the Total Environment 931:172978.

Journal Article20241377Emerging Contaminants

Le-Duy Pham, A., P. Damien, D. McCoy, M. Mar, F. Kessouri, J.C. McWilliams, J. Moffett, D. Bianchi. 2024. The Shelf-To-Basin Transport of Iron From the Northern U.S. West Coast to the Pacific Ocean. Global Biogeochemical Cycles DOI:10.1029/2023GB008029.

Journal Article20241376Climate Change, Eutrophication

Brander, S.M., A. Konig, B.C. Almroth, L.M. Thornton Hampton. 2024. The Potential for Toxicity to Fishes from Micro- and Nanoplastics, and Their Additives. in: K.L. Willett, N. Aluru (eds.), Toxicology of Fishes (2nd ed.) pp. 362-391. CRC Press. Boca Raton, FL.

Book Chapter20241374Emerging Contaminants, Trash Pollution

Mehinto, A.C., S.M. Brander, S. Siddiqui. 2024. Adverse Outcome Pathways and Their Relevance. in: S. Siddiqui, S.M. Brander (eds.), Aquatic Ecotoxicology: Understanding Pollutants, Aquatic Organisms, and their Environments pp. 139-145. Springer Cham. New York, NY.

Book Chapter20241375Emerging Contaminants

Wong, C.S., S. Coffin, C.M. Rochman, S.B. Weisberg. 2024. Informing methods for detecting and quantifying microplastics through the lens of a global intercalibration exercise: An editorial overview of the special issue and beyond. Chemosphere 356:141662.

Journal Article20241371Emerging Contaminants, Trash Pollution

Rothman, J.A., A. Saghir, A.G. Zimmer-Faust, K. Langlois, K. Raygoza, J.A. Steele, J.F. Griffith, K.L. Whiteson. 2024. Longitudinal Sequencing and Variant Detection of SARS-CoV-2 across Southern California Wastewater. Applied Microbiology 4:635-649.

Journal Article20241372Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Mayer, P.M., K.D. Moran, E.L. Miller, S.M. Brander, S. Harper, M. Garcia-Jaramillo, V. Carrasco-Navarro, K.T. Ho, R.M. Burgess, L.M. Thornton Hampton, E.F. Granek, M. McCauley, J.K. McIntyre, E.P. Kolodziej, X. Hu, A.J. Williams, B.A. Beckingham, M.E. Jackson, R.D. Sanders-Smith, C.L. Fender, G.A. King, M. Bollman, S.S. Kaushal, B.E. Cunningham, S.J. Hutton, J. Lang, H.V. Goss, S. Siddiqui, R. Sutton, D. Lin, M. Mendez. 2024. Where the rubber meets the road: Emerging environmental impacts of tire wear particles and their chemical cocktails. Science of the Total Environment 927:171153.

Journal Article20241373Emerging Contaminants, Trash Pollution

Lie, A., A.G. Zimmer-Faust, R.E. Diner, E. Kunselman, Z. Daniel, K. Van Artsdalen, M.C. Salas Garcia, J.A. Gilbert, D. Shultz, J. Chokry, K. Langlois, J. Smith. 2024. Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster. Environmental Monitoring and Assessment 196:447.

Journal Article20241369Eutrophication, Harmful Algal Blooms

Doughty, C.L., H. Gu, R.F. Ambrose, E.D. Stein, E. Borgnis Sloane, M. Martinez, K.C. Cavanaugh. 2024. Climate drivers and human impacts shape 35-year trends of coastal wetland health and composition in an urban region. Ecosphere DOI:10.1002/ecs2.4832.

Journal Article20241370Climate Change, Sea Level Rise

Kessouri, F., M. Sutula, D. Bianchi, M. Ho, P. Damien, J.C. McWilliams, C.A. Frieder, L. Renault, H. Frenzel, K. McLaughlin, C. Deutsch. 2024. Cross-shore transport and eddies promote large scale response to urban eutrophication. Scientific Reports 14:7240.

Journal Article20241368Climate Change, Eutrophication

Mazor, R.D. 2024. Bioassessment Survey of the Stormwater Monitoring Coalition: Workplan for Years 2021 through 2025 Version 4.0 (2024). Technical Report 1174. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20241174Bioassessment, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Gillett, D.J., R.D. Mazor, M. Sutula, A. Holt. 2024. Reach-scale models show heterogeneity of stream benthic invertebrate responses to eutrophication stress. Ecological Indicators 160:111791.

Journal Article20241366Bioassessment, Ecohydrology, Eutrophication

Wong, C.S., S.B. Weisberg. 2024. Development of an accreditation process for analytical methods to measure microplastics in drinking water for regulatory monitoring. Chemosphere 353:141568.

Journal Article20241365Emerging Contaminants, Trash Pollution

Mehinto, A.C., E. Darin, D.J. Greenstein, K. Wong. 2024. Screening for Emerging Contaminants in the Santa Ana Region. Technical Report 1358. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20241358Bioanalytical Cell Screening Assays, Emerging Contaminants

Hinds, J.B., T. Garg, S. Hutmacher, A. Nguyen, Z. Zheng, J.F. Griffith, J.A. Steele, A. Gonzalez Fernandez, K.C. Schiff. 2024. Assessing the defecation practices of unsheltered individuals and their contributions to microbial water quality in an arid, urban watershed. Science of the Total Environment 920:170708.

Journal Article20241364Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Rogers, J.D., F.D.L. Leusch, B. Chambers, K.D. Daniels, L.J. Everett, R. Judson, K. Maruya, A.C. Mehinto, P.A. Neale, K. Paul-Friedman, R. Thomas, S.A. Snyder, J. Harrill. 2024. High-Throughput Transcriptomics of Water Extracts Detects Reductions in Biological Activity with Water Treatment Processes. Environmental Science & Technology 58:2027-2037.

Journal Article20241362Bioanalytical Cell Screening Assays, Emerging Contaminants

Lao, W., S. Dial, M. Salmon, C.S. Wong. 2024. Development and validation of an acid/alkaline digestion method for efficient microplastic extraction from wastewater treatment plant effluents: Sulfuric acid concentration and contact time do matter. Science of the Total Environment 917: 170528.

Journal Article20241361Emerging Contaminants, Trash Pollution

Kelly, R.P., D.M. Lodge, K.N. Lee, S. Theroux, A.J. Sepulveda, C.A. Scholin, J.M. Craine, E.A. Allan, K.M. Nichols, K.M. Parsons, K.D. Goodwin, Z. Gold, F.P. Chavez, R.T. Noble, C.L. Abbott, M.R. Baerwald, A.M. Naaum, P.M. Thielen, A.L. Simons, C.L. Jerde, J.J. Duda, M.E. Hunter, J.A. Hagan, R.S. Meyer, J.A. Steele, M.Y. Stoeckle, H.M. Bik, C.P. Meyer, E.D. Stein, K.E. James, A.C. Thomas, E. Demir-Hilton, M.A. Timmers, J.F. Griffith, M.J. Weise, S.B. Weisberg. 2024. Toward a national eDNA strategy for the United States. Environmental DNA DOI:10.1002/edn3.432.

Journal Article20241336Bioassessment, DNA Barcoding

Stein, E.D., C.L. Jerde, E. Andruszkiewicz Allan, A.J. Sepulveda, C.L. Abbott, M.R. Baerwald, J. Darling, K.D. Goodwin, R.S. Meyer, M.A. Timmers, P.M. Thielen. 2024. Critical considerations for communicating environmental DNA science. Environmental DNA DOI:10.1002/edn3.472.

Journal Article20241339Bioassessment, DNA Barcoding

Rinehart, S.A., J.M. Dybiec, P. Richardson, J.B. Walker, J.D. Peabody, J.A. Cherry. 2024. Researcher effects on the biological structure and edaphic conditions of field sites and implications for management. Ecosphere DOI:10.1002/ecs2.4750.

Journal Article20241360Bioassessment

Brown, J.S., R.D. Mazor. 2023. An assessment of the biological condition of streams in the San Francisco Bay. Technical Report 1340. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231340Bioassessment

Smith, J., J.A. Cram, M.P. Berndt, V. Hoard, D. Shultz, A.C. Deming. 2023. Quantifying the linkages between California sea lion (Zalophus californianus) strandings and particulate domoic acid concentrations at piers across Southern California. Frontiers in Marine Science 10:1278293.

Journal Article20231359Eutrophication, Harmful Algal Blooms

Starks, M., C.M. Schaefer, K.M. Jeffries, D. Deslauriers, K.H. Luong, C.S. Wong, M.L. Hanson, C.W. Knapp. 2023. Presence of antibiotic resistance genes in the receiving environment of Iqaluit’s wastewater treatment plant in water, sediment, and clams sampled from Frobisher Bay, Nunavut: a preliminary study in the Canadian Arctic. Arctic Science 9:919-927.

Journal Article20231357Emerging Contaminants, Sediment Quality

Fassman-Beck, E., K.C. Schiff, R. Butler. 2023. Development of the SMC Regional BMP Monitoring Network 2020-2023. Technical Report 1352. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231352Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Philo, S.E., K.B. De Leon, R.T. Noble, N.A. Zhou, R. Alghafri, I. Bar-Or, A. Darling, N. D'Souza, O. Hachimi, D. Kaya, S. Kim, K. Gaardbo Kuhn, B.A. Layton, C. Mansfeldt, B. Oceguera, T.S. Radniecki, J.L. Ram, L.P. Saunders, A. Shrestha, L.B. Stadler, J.A. Steele, B.S. Steveson, J.R. Vogel, K. Bibby, A.B. Boehm, R.U. Halden, J. Delgado Vela. 2023. Wastewater surveillance for bacterial targets: current challenges and future goals. Applied and Environmental Microbiology DOI:10.1128/aem.01428-23.

Journal Article20231363Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Ho, M., F. Kessouri, C.A. Frieder, M. Sutula, D. Bianchi, J.C. McWilliams. 2023. Effect of ocean outfall discharge volume and dissolved inorganic nitrogen load on urban eutrophication outcomes in the Southern California Bight. Scientific Reports 13:22148.

Journal Article20231356Climate Change, Eutrophication

Mazor, R.D. 2023. A standard taxonomic effort (STE) for terrestrial arthropods collected from dry streams in California and Arizona. Technical Report 1343. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231343Bioassessment, Indices Of Biotic Integrity

Mazor, R.D., J. Olson, T. Clark. 2023. A standard taxonomic effort (STE) for bryophytes collected from dry streambeds in California and Arizona. Technical Report 1344. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231344Bioassessment, Indices Of Biotic Integrity

Goodrich, K.A., N. Ulibarri, R. Matthew, E.D. Stein, M. Brand, B.F. Sanders. 2023. Toward improved sediment management and coastal resilience through efficient permitting in California. Environmental Management 72:558–567.

Journal Article20231353Climate Change, Sea Level Rise

Damien, P., D. Bianchi, J.C. McWilliams, F. Kessouri, C. Deutsch, R. Chen, L. Renault. 2023. Enhanced Biogeochemical Cycling Along the U.S. West Coast Shelf. Global Biogeochemical Cycles DOI:10.1029/2022GB007572.

Journal Article20231354Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Ulses, C., C. Estournel, P. Marsaleix, K. Soetaert, M. Fourrier, L. Coppola, D. Lefevre, F. Touratier, C. Goyet, V. Guglielmi, F. Kessouri, P. Testor, X. Durrieu de Madron. 2023. Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region. Biogeosciences 20:4683-4710.

Journal Article20231355Climate Change, Eutrophication

Gillett, D.J., S.B. Weisberg, S.R. Alin, D. Cadien, R. Velarde, K. Barwick, C. Larsen, A. Latker. 2023. Changes in the macrobenthic infaunal community of the Southern California continental margin over five decades in relation to oceanographic factors. Marine Ecology Progress Series 722:65-88.

Journal Article20231351Climate Change, Ocean Acidification And Hypoxia

Smith, J., E. Eggleston, M.D.A. Howard, S. Ryan, J. Gichuki, K. Kennedy, A. Tyler, M. Beck, S. Huie, D.A. Caron. 2023. Historic and recent trends of cyanobacterial harmful algal blooms and environmental conditions in Clear Lake, California: A 70-year perspective. Elementa: Science of the Anthropocene DOI:10.1525/elementa.2022.00115.

Journal Article20231348Eutrophication, Harmful Algal Blooms

Wolfand, J.M., A. Sytsma, K.T. Taniguchi-Quan, E.D. Stein, T.S. Hogue. 2023. Impact of wastewater reuse on contaminants of emerging concern in an effluent-dominated river. Frontiers in Environmental Science DOI:10.3389/fenvs.2023.1091229.

Journal Article20231349Ecohydrology, Emerging Contaminants

Zhou, J., J.G. Izett, C.A. Edwards, P. Damien, F. Kessouri, J.C. McWilliams. 2023. Modeling the dispersal of the San Francisco Bay plume over the northern and central California shelf. Estuarine, Coastal and Shelf Science 287:108336.

Journal Article20231350Eutrophication

Damien, P., D. Bianchi, F. Kessouri, J.C. McWilliams. 2023. Modulation of Phytoplankton Uptake by Mesoscale and Submesoscale Eddies in the California Current System. Geophysical Research Letters DOI:10.1029/2023GL104853.

Journal Article20231346Eutrophication

Taniguchi-Quan, K.T., K. Irving, R. Darling, D. Kim, H. McMillan, E.D. Stein. 2023. Risk-Decision Framework for Evaluating Vulnerability of Streams to Hydrologic Alteration. Technical Report 1322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231322Bioassessment, Ecohydrology

Rabe, A., S. Ravuri, E. Burnor, J.A. Steele, R.S. Kantor, S. Choi, S. Forman, R. Batjiaka, S. Jain, T.M. León, D.J. Vugia, A.T. Yu. 2023. Correlation between wastewater and COVID-19 case incidence rates in major California sewersheds across three variant periods. Journal of Water & Health 21:1303-1317.

Journal Article20231345Microbial Risk Assessment, Microbial Source Tracking

Brent, R., H. Bailey, T. Norberg-King, L. Van der Vliet, A. John Bailer. 2023. Ceriodaphnia dubia Quality Assurance Guidance Recommendations. Technical Report 1341. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231341Runoff Water Quality

Seybold, E.C., A. Bergstrom, C. Nathan Jones, A.J. Burgin, S. Zipper, S.E. Godsey, W.K. Dodds, M.A. Zimmer, M. Shanafield, T. Datry, R.D. Mazor, M.L. Messager, J.D. Olden, A. Ward, S. Yu, K.E. Kaiser, A. Shogren, R.H. Walker. 2023. How low can you go? Widespread challenges in measuring low stream discharge and a path forward. Limnology and Oceanography Letters DOI:10.1002/lol2.10356.

Journal Article20231342Bioassessment, Ecohydrology

Mazor, R.D., J.S. Brown, R. Darling. 2023. Ecological conditions of dry streams in the Los Angeles region. Technical Report 1333. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231333Bioassessment

Gillett, D.J., A. Holt. 2023. Options, Impediments, and Supports for the Development of an Eelgrass (Zostera marina) Habitat Occupancy Model in the Embayments of Southern California. Technical Report 1334. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231334Bioassessment

Arzeno-Soltero, I.B., B.T. Saenz, C.A. Frieder, M.C. Long, J. DeAngelo, S.J. Davis, K.A. Davis. 2023. Large global variations in the carbon dioxide removal potential of seaweed farming due to biophysical constraints. Communications Earth and Environment 4:185.

Journal Article20231337Climate Change, Ocean Acidification And Hypoxia

Mehinto, A.C., B. Du, E. Wenger, Z. Tian, E.P. Kolodziej, D. Apeti, K.A. Maruya. 2023. Bioanalytical and non-targeted mass spectrometric screening for contaminants of emerging concern in Southern California bight sediments. Chemosphere 331:138789.

Journal Article20231338Bioanalytical Cell Screening Assays, Emerging Contaminants, Sediment Quality

Thornton Hampton, L.M., H. De Frond, K. Gesulga, S. Kotar, W. Lao, C. Matuch, S.B. Weisberg, C.S. Wong, S. Brander, S. Christansen, C.R. Cook, F. Du, S. Ghosal, A.B. Gray, J. Hankett, P.A. Helm, K.T. Ho, T. Kefela, G. Lattin, A. Lusher, L. Mai, R.E. McNeish, O. Mina, E.C. Minor, S. Primpke, K. Rickabaugh, V.C. Renick, S. Singh, B.V. Bavel, F. Vollnhals, C.M. Rochman. 2023. The influence of complex matrices on method performance in extracting and monitoring for microplastics. Chemosphere 334:138875.

Journal Article20231335Emerging Contaminants, Trash Pollution

McLaughlin, K., R.D. Mazor, M. Sutula, K.C. Schiff. 2023. Regional assessment of trash in Southern California coastal watersheds, United States. Frontiers in Environmental Science 11:1210201.

Journal Article20231332Regional Monitoring, Southern California Bight Regional Monitoring Program, Trash Pollution

Lohmann, R., B. Vrana, D. Muir, F. Smedes, J. Sobotka, E.Y. Zeng, L. Bao, I.J. Allan, P. Astrahan, R.O. Barra, T. Bidleman, E. Dykyi, N. Estoppey, G. Fillmann, N. Greenwood, P.A. Helm, L. Jantunen, S. Kaserzon, J.V. Macias, K.A. Maruya, F. Molina, B. Newman, R.M. Prats, M. Tsapakis, M. Tysklind, B.L. van Drooge, C.J. Veal, C.S. Wong. 2023. Passive-Sampler-Derived PCB and OCP Concentrations in the Waters of the World—First Results from the AQUA-GAPS/MONET Network. Environmental Science and Technology 57:9342-9352.

Journal Article20231331Emerging Contaminants

Zimmer-Faust, A.G., J.F. Griffith, J.A. Steele, B. Santos, Y. Cao, L. Asato, T. Chiem, S. Choi, A. Diaz, J. Guzman, D. Laak, M. Padilla, J. Quach-Cu, M. Woo, S.B. Weisberg. 2023. Relationship between coliphage and Enterococcus at southern California beaches and implications for beach water quality management. Journal of Water Research 230:119383.

Journal Article20231330Microbial Risk Assessment, Microbial Water Quality

Rothman, J.A., A. Saghir, S. Chung, N. Boyajian, T. Dinh, J. Kim, J. Oval, V. Sharavanan, C. York, A.G. Zimmer-Faust, K. Langlois, J.A. Steele, J.F. Griffith, K.L. Whiteson. 2023. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020–21 reveals widespread transcription of antibiotic resistance genes. Journal of Water Research 329:119421.

Journal Article20231329Microbial Risk Assessment, Microbial Water Quality

Schiff, K.C., J.F. Griffith, J.A. Steele, A.G. Zimmer-Faust. 2023. Dry and Wet Weather Survey for Human Fecal Sources in the San Diego River Watershed. Water 15:2239.

Journal Article20231327Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Diner, R.E., A.G. Zimmer-Faust, E. Cooksey, S. Allard, S.M. Kodera, E. Kunselman, Y. Garodia, M.P. Verhougstraete, A.E. Allen, J.F. Griffith, J.A. Gilbert. 2023. Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. Applied and Environmental Microbiology DOI:10.1128/aem.00318-23.

Journal Article20231328Microbial Risk Assessment, Microbial Water Quality

Kenitz, K.M., E.C. Orenstein, C.R. Anderson, A.J. Barth, C. Briseno-Avena, D.A. Caron, M.L. Carter, E. Eggleston, P.J.S. Franks, J.T. Fumo, J.S. Jaffe, K.A. McBeain, A. Odell, K. Seech, R. Shipe, J. Smith, D.A.A. Taniguchi, E.L. Venrick, A.D. Barton. 2023. Convening Expert Taxonomists to Build Image Libraries for Training Automated Classifiers. Limnology and Oceanography Bulletin DOI:10.1002/lob.10584.

Journal Article20231326Eutrophication, Harmful Algal Blooms

Gillett, D.J., R.D. Mazor, A.E. Holt, R. Darling, R. Butler. 2023. Instructions for Application of the Rapid Screening Causal Assessment (RSCA) Tools v 2.0 in California’s Streams. Technical Report 1310. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231310Bioassessment

Munno, K., A.L. Lusher, E.C. Minor, A. Gray, K. Ho, J. Hankett, C.T. Lee, S. Primpke, R.E. McNeish, C.S. Wong, C. Rochman. 2023. Patterns of microparticles in blank samples: A study to inform best practices for microplastic analysis. Chemosphere 333:138883.

Journal Article20231325Emerging Contaminants, Trash Pollution

Drewes, J.E., P. Anderson, N. Denslow, D.C.G. Muir, A. Olivieri, D. Schlenk, S.A. Snyder. 2023. Monitoring Strategies for Constituents of Emerging Concern (CECs) in California's Aquatic Ecosystems. Technical Report 1302. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231302Bioanalytical Cell Screening Assays, Emerging Contaminants

Sandoval-Belmar, M., J. Smith, A.R. Moreno, C. Anderson, R.M. Kudela, M. Sutula, F. Kessouri, D.A. Caron, F.P. Chavez, D. Bianchi. 2023. A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia harmful algal blooms along the California coast. Harmful Algae 126:102435.

Journal Article20231323Eutrophication, Harmful Algal Blooms

Gross, S., K.M. Fritz, T.L. Nadeau, R.D. Mazor, M. Eddy, B. Topping, R.F. Edgerton, K. Nicholas. 2023. Development and Evaluation of the Beta Streamflow Duration Assessment Methods for the Northeast and Southeast. Technical Report 1321. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20231321Bioassessment, Ecohydrology

Simons, A.L., N. Aulerich, H. Carlson, I. Chandra, J. Chancellor, G. Gemayel, D.J. Gillett, D. Levene, J. Lin, G. Nichol, H. Patel, S. Zhu. 2023. Using Zeta Diversity in Describing the Health of Soft Sediment Benthic Macroinvertebrates in the Southern California Bight. Journal of Coastal Research 39:418-430.

Journal Article20231320Bioassessment, Indices Of Biotic Integrity

Smith, J., D. Shultz, A. Lie, S. Theroux. 2023. Diversity and Prevalence of Cyanobacteria and Cyanotoxins in Los Angeles Region Recreational Lakes and Reservoirs. Technical Report 1309. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20231309Eutrophication, Harmful Algal Blooms

Lao, W., C.S. Wong. 2023. How to establish detection limits for environmental microplastics analysis. Chemosphere 327:138456.

Journal Article20231317Emerging Contaminants, Trash Pollution

Siu, J., E.D. Stein, J.S. Brown. 2023. When is Aquatic Resource Type Conversion Appropriate: A Framework for Cleaning Sand out of the Gears and a Case Study for McInnis Marsh. Wetland Science and Practice 41:70-85.

Journal Article20231318Climate Change, Sea Level Rise

Simons, A.L., S. Theroux, M. Osborne, S. Nuzhdin, R.D. Mazor, J.A. Steele. 2023. Zeta diversity patterns in metabarcoded lotic algal assemblages as a tool for bioassessment. Ecological Applications DOI:10.1002/eap.2812.

Journal Article20231319Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Stein, E.D., J.B. Walker, K. O'Connor, R. Clark, C. Whitcraft. 2023. Development of a Statewide Estuary Monitoring Program to Evaluate California's Estuarine Marine Protected Areas - Estuary Marine Protected Area Program Overview. Technical Report 1315. California Ocean Protection Council. Sacramento, CA.

Technical Report20231315Bioassessment, Regional Monitoring

Walker, J.B., E.D. Stein, K. O'Connor, R. Clark, C. Whitcraft, S. Garcia, B. Hughes, A. Cooper, D. Jacobs, M. Abrecht, J. Largier, R. Roettger, C. Toms. 2023. Estuary Marine Protected Area - Monitoring Protocol. Technical Report 1315.A. Ocean Protection Council. Sacramento, CA.

Technical Report20231315.ABioassessment, Regional Monitoring

O'Connor, K., R. Clark, B. Fulkerson, J.B. Walker, E.D. Stein, C. Whitcraft, S. Garcia. 2023. Estuary Marine Protected Area - 2021 Data Analysis Report. Technical Report 1315.B. California Ocean Protection Council. Sacramento, CA.

Technical Report20231315.BBioassessment, Regional Monitoring

Stein, E.D., J.B. Walker, K. O'Connor, C. Toms. 2023. Estuary Marine Protected Area - Monitoring Program Implementation Blueprint. Technical Report 1315.C. California Ocean Protection Council. Sacramento, CA.

Technical Report20231315Bioassessment, Regional Monitoring

Lao, W. 2023. Incorporating performance reference compounds in retractable/reusable solid phase microextraction fiber for passive sampling of hydrophobic organic contaminants in water. Science of the Total Environment DOI:10.1016/j.scitotenv.2023.162252.

Journal Article20231313Emerging Contaminants

De Frond, H., W. Cowger, V. Renick, S. Brander, S. Primpke, S. Sukumaran, D. Elkhatib, S. Barnett, M. Navas-Moreno, K. Rickabaugh, F. Vollnhals, B. O'Donnell, A. Lusher, E. Lee, W. Lao, G. Amarpuri, G. Sarau, S. Christiansen. 2023. What determines accuracy of chemical identification when using microspectroscopy for the analysis of microplastics?. Chemosphere DOI:10.1016/j.chemosphere.2022.137300.

Journal Article20231312Emerging Contaminants, Trash Pollution

DeAngelo, J., B.T. Saenz, I.B. Arzeno-Soltero, C.A. Frieder, M.C. Long, J. Hamman, K.A. Davis, S.J. Davis. 2023. Economic and biophysical limits to seaweed farming for climate change mitigation. Natural Plants 9:45-57.

Journal Article20231311Climate Change, Ocean Acidification And Hypoxia

Langknecht, T., W. Lao, C.S. Wong, S. Kotar, D.E. Khatib, S. Robinson, R.M. Burgess, K.T. Ho. 2023. Comparison of two procedures for microplastics analysis in sediments based on an interlaboratory exercise. Chemosphere DOI:10.1016/j.chemosphere.2022.137479.

Journal Article20231308Emerging Contaminants, Sediment Quality, Trash Pollution

Kenitz, K.M., C.R. Anderson, M.L. Carter, E. Eggleston, K. Seech, R. Shipe, J. Smith, E.C. Orenstein, P.J.S. Franks, J.S. Jaffe, A.D. Barton . 2023. Environmental and ecological drivers of harmful algal blooms revealed by automated underwater microscopy. Limnology and Oceanography 9999:1-18.

Journal Article20231307Climate Change, Eutrophication, Harmful Algal Blooms

Wang, S., W. Lao, H. Li, L. Guo, J. You. 2023. Assessing bioaccumulation potential of sediment associated fipronil degradates in oligochaete Lumbriculus variegatus based on passive sampler measured bioavailable concentration. Science of the Total Environment 863:1-7.

Journal Article20231306Emerging Contaminants

Stepien, C.A., S. Theroux, S.B. Weisberg. 2022. The Second National Workshop on Marine eDNA: A workshop to accelerate the incorporation of eDNA science into environmental management application. Environmental DNA DOI:10.1002/edn3.379.

Journal Article20221300Bioassessment, DNA Barcoding

Gillett, D.J., W. Enright, J.B. Walker. 2022. Southern California Bight 2018 Regional Monitoring Program: Volume III. Benthic Infauna. Technical Report 1289. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221289Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Kessouri, F., L. Renault, J.C. McWilliams, P. Damien, D. Bianchi. 2022. Enhancement of Oceanic Eddy Activity by Fine-Scale Orographic Winds Drives High Productivity, Low Oxygen, and Low pH Conditions in the Santa Barbara Channel. Journal of Geophysical Research: Oceans 127:1-14.

Journal Article20221299Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Mazor, R.D., B. Topping, T.L. Nadeau, K.M. Fritz, J. Kelso . 2022. Development and Evaluation of the Beta Streamflow Duration Assessment Method for the Western Mountains: Data Supplement. Technical Report 1222.B. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20221222.BEcohydrology

Thornton Hampton, L.M., S.M. Brander, S. Coffin, M. Cole, L. Hermabessiere, A.A. Koelmans, C.M. Rochman. 2022. Characterizing microplastic hazards: which concentration metrics and particle characteristics are most informative for understanding toxicity in aquatic organisms?. Microplastics and Nanoplastics 2:20.

Journal Article20221298Runoff Water Quality, Trash Pollution

Stein, E.D., A.C. Horne, R.E. Tharme, J. Tonkin. 2022. Editorial: Environmental flows in an uncertain future. Frontiers in Environmental Science 10:1-5.

Journal Article20221295Ecohydrology

Cheng, Y., D.A. Vaccari, E. Fassman-Beck. 2022. Phosphorus Leaching Behavior from Extensive Green Roof Substrates. Journal of Sustainable Water in the Built Environment 8:06022003.

Journal Article20221296Runoff Water Quality, Stormwater BMPs

Cheng, Y., D.A. Vaccari, B.G. Johannesson, E. Fassman-Beck. 2022. Multiyear Study on Phosphorus Discharge from Extensive Sedum Green Roofs with Substrate Amendments. Journal of Sustainable Water in the Built Environment 8:04022014.

Journal Article20221297Runoff Water Quality, Stormwater BMPs

Ainslie, W., E.D. Stein. 2022. Additional Considerations for Incorporating Ecosystem Services into Compensatory Mitigation Programs. in: C.A. Jackson,, T.H. DeWitt (eds.), Incorporating Ecosystem Services into Restoration Effectiveness Monitoring & Assessment: Frameworks, Tools, and Examples pp. 177-201. U.S. Environmental Protection Agency. Washington, D.C..

Book Chapter20221294Bioassessment, Ecohydrology

Moreno, A.R., C. Anderson, R.M. Kudela, M. Sutula, C. Edwards, D. Bianchi. 2022. Development, calibration, and evaluation of a model Pseudo-nitzschia and domoic acid production for regional ocean modeling studies. Harmful Algae 118:102296.

Journal Article20221291Eutrophication, Harmful Algal Blooms

James, A., T.L. Nadeau, K.M. Fritz, B. Topping, R.F. Edgerton, R.D. Mazor . 2022. User Manual for a Beta Streamflow Duration Assessment Method for the Great Plains of the United States - Version 1.0.. Technical Report 1292. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20221292Ecohydrology

Frieder, C.A., C. Yan, M. Chamecki, D. Dauhajre, J.C. McWilliams, J. Infante, M.L. McPherson, R.M. Kudela, F. Kessouri, M. Sutula, I.B. Arzeno-Soltero, K.A. Davis. 2022. A Macroalgal Cultivation Modeling System (MACMODS): Evaluating the Role of Physical-Biological Coupling on Nutrients and Farm Yield. Frontiers in Marine Science DOI:10.3389/fmars.2022.752951.

Journal Article20221347Eutrophication

Winston, R.J., E. Fassman-Beck. 2022. Permeable Pavement Maintenance: A Review of Literature to Assess Clogging, Predict Maintenance Frequency, and Compare Maintenance Techniques. Technical Report 1280. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221280Runoff Water Quality, Stormwater BMPs

Kim, S., L.C. Kennedy, M.K. Wolfe, C.S. Criddle, D.H. Duong, A. Topol, B.J. White, R.S. Kantor, K.L. Nelson, J.A. Steele, K. Langlois, J.F. Griffith, A.G. Zimmer-Faust, S.L. McLellan, M.K. Schussman, M. Ammerman, K.R. Wigginton, K.M. Bakker, A.B. Boehm. 2022. SARS-CoV-2 RNA is enriched by orders of magnitude in primary settled solids relative to liquid wastewater at publicly owned treatment works. Environmental Science Water Research and Technology 8:757-770.

Journal Article20221301Microbial Water Quality

Kotar, S., R. McNeish, C. Murphy-Hagan, V. Renick, C.T. Lee, C. Steele, A. Lusher, C. Moore, E. Minor, J. Schroeder, P. Helm, K. Rickabaugh, H.D. Frond, K. Gesulga, W. Lao, K. Munno, L.M. Thornton Hampton, S.B. Weisberg, C.S. Wong, G. Amarpuri, R.C. Andrews, S.M. Barnett, S. Christiansen W Cowgeri, K. Crampond, F. Du, A.B. Gray, J. Hankett, K. Ho, J. Jaeger, C. Lilley, L. Mai, O. Mina, E. Lee, S. Primpke, S. Singh, J. Skovly, T. Slifko, S. Sukumaran, B. Bavel, J.V. Brocklin, F. Vollnhals, C. Wu, C.M. Rochman . 2022. Quantitative assessment of visual microscopy as a tool for microplastic research: Recommendations for improving methods and reporting. Chemosphere 308:1-9.

Journal Article20221290Emerging Contaminants, Trash Pollution

Walker, J.B., D.J. Gillett, M. Sutula. 2022. Establishing biologically relevant sediment organic matter thresholds for estuaries and embayments of the Southern California Bight, USA. Ecological Indicators 143:1-12.

Journal Article20221288Bioassessment, Eutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Kenkel, C.D., J. Smith, K.A. Hubbard, C. Chadwick, N. Lorenzen, A.O. Tatters, D.A. Caron. 2022. Reduced representation sequencing accurately quantifies relative abundance and reveals population-level variation in Pseudo-nitzschia ssp.. Harmful Algae 118:1-13.

Journal Article20221287Eutrophication, Harmful Algal Blooms

Brand, M.W., K. Buffington, J.B. Rogers, K. Thorne, E.D. Stein, B.F. Sanders . 2022. The Multi-Decadal Simulation of Marsh Topography Under Sea Level Rise and Episodic Sediment Loads. Journal of Geophysical Research 127:1-20.

Journal Article20221286Climate Change, Runoff Water Quality, Sea Level Rise

Fassman-Beck, E., K.C. Schiff. 2022. SMC Regional BMP Monitoring Network Work Plan 2022-2023 - Version 1.0. Technical Report 1270. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221270Runoff Water Quality, Stormwater BMPs

Stein, E.D., M.E. McClain, A. Sengupta, T.E. Grantham, J. Zimmerman, S.M. Yarnell . 2022. Allocations and Environmental Flows. in: J. Rouillard, C. Babbitt, E. Challies, J.D. Rinaudo (eds.), Water Resources Allocation and Agriculture: Transitioning from Open to Regulated Access pp. 49-59. IWA Publishing. London, UK.

Book Chapter20221281Climate Change, Ecohydrology

Schiff, K.C., E. Darin, E. Fassman-Beck, G. Shusterman, L. Flores, T. Hale, C. Beegan . 2022. Monitoring Guidance To Support Adaptive Watershed Management. Technical Report 1257. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221257Runoff Water Quality, Stormwater BMPs

Mazor, R.D., M. Sutula, S. Theroux, M. Beck, P.R. Ode. 2022. Eutrophication thresholds associated with protection of biological integrity in California wadeable streams. Ecological Indicators 142:109180.

Journal Article20221282Bioassessment, Eutrophication, Harmful Algal Blooms, Indices Of Biotic Integrity

Sutula, M., J. Butcher, S. Sarkar, S. Roy. 2022. Science Supporting Decisions on Management of Eutrophication in Elkhorn Slough Estuary. Technical Report 1259. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221259Eutrophication, Harmful Algal Blooms

Biggs, T., A. Zeigler, K.T. Taniguchi-Quan. 2022. Runoff and sediment loads in the Tijuana River: Dam effects, extreme events, and change during urbanization. Journal of Hydrology: Regional Studies 42:101162.

Journal Article20221277Ecohydrology, Runoff Water Quality

Ollison, G.A., S.K. Hu, J.V. Hopper, B.P. Stewart, J. Smith, J.L. Beatty, L.K. Rink, D.A. Caron. 2022. Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight). Environmental Microbiology 2022:1-19.

Journal Article20221278Eutrophication, Harmful Algal Blooms

Wolfand, J.M., A. Sytsma, V.L. Hennon, E.D. Stein, T.S. Hogue. 2022. Dilution and Pollution: Assessing the Impacts of Water Reuse and Flow Reduction on Water Quality in the Los Angeles River Basin. Environmental Science and Technology DOI:10.1021/acsestwater.2c00005.

Journal Article20221283Ecohydrology, Runoff Water Quality

Coffin, S., S.B. Weisberg, C. Rochman, M. Kooi, A.A. Koelmans. 2022. Risk Characterization of Microplastics in San Francisco Bay, California. Microplastics and Nanoplastics 2:19.

Journal Article20221284Emerging Contaminants, Trash Pollution

Thornton Hampton, L.M., H. Bouwmeester, S.M. Brander, S. Coffin, M. Cole, L. Hermabessiere, A.C. Mehinto, E. Miller, C.M. Rochman, S.B. Weisberg. 2022. Research recommendations to better understand the potential health impacts of microplastics to humans and aquatic ecosystems. Microplastics and Nanoplastics 2:18.

Journal Article20221275Emerging Contaminants, Trash Pollution

Jenkins, T., B.D. Persaud, W. Cowger, K. Szigeti, D.G. Roche, E. Clary, S. Slowinski, B. Lei, A. Abeynayaka, E.S. Nyadjro, T. Maes, L.M. Thornton Hampton, M. Bergmann, J. Aherne, A.S. Mason, J.F. Honek, F. Rezanezhad, A.L. Lusher, A.M. Booth, R.D.L. Smith, P. Van Cappellan. 2022. Current State of Microplastic Pollution Research Data: Trends in Availability and Sources of Open Data. Frontiers in Environmental Science 10:912107.

Journal Article20221276Emerging Contaminants, Trash Pollution

Murphy, B.M., K. Russell, C.C. Stillwell, R. Hawley, M. Scoggins, K.G. Hopkins, M.J. Burns, K.T. Taniguchi-Quan, K.H. Macneal, R. Smith. 2022. Closing the gap on wicked urban stream restoration problems: A framework to integrate science and community values. Freshwater Science 41:3.

Journal Article20221273Bioassessment, Ecohydrology, Runoff Water Quality, Stormwater BMPs

Mehinto, A.C., S. Coffin, A.A. Koelmans, S.M. Brander, M. Wagner, L.M. Thornton Hampton, A.G. Burton, E. Miller, T. Gouin, S.B. Weisberg, C.M. Rochman. 2022. Risk-based management framework for microplastics in aquatic ecosystems. Microplastics and Nanoplastics 2:17.

Journal Article20221271Emerging Contaminants, Trash Pollution

Florea, K., B. Stewart, E. Webb, D.A. Caron, J. Smith. 2022. Environmental Drivers of Cyanobacterial Harmful Algal Blooms and Cyanotoxins in Clear Lake: 2020-2021. Technical Report 1261. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221261Eutrophication, Harmful Algal Blooms

Howard, M.D.A., J. Smith, D.A. Caron, R.M. Kudela, K. Loftin, K. Hayashi, R. Fadness, S. Fricke, J. Kann, M. Roethler, A. Tatters, S. Theroux. 2022. Integrative monitoring strategy for marine and freshwater harmful algal blooms and toxins across the freshwater‐to‐marine continuum. Integrated Environmental Assessment and Management DOI:10.1002/ieam.4651.

Journal Article20221279Eutrophication, Harmful Algal Blooms, Regional Monitoring

Thornton Hampton, L.M., H. Lowman, S. Coffin, E. Darin, H. De Frond, L. Hermabessiere, E. Miller, V.N. de Ruijter, A. Faltynkova, S. Kotar, L. Monclus, S. Siddiqui, J. Volker, S. Brander, A.A. Koelmans, C.M. Rochman, M. Wagner, A.C. Mehinto. 2022. A living tool for the continued exploration of microplastic toxicity. Microplastics and Nanoplastics 2:13.

Journal Article20221274Emerging Contaminants, Trash Pollution

McLaughlin, K., R.D. Mazor, K.C. Schiff, L.M. Thornton Hampton. 2022. Southern California Bight 2018 Regional Monitoring Program: Volume IX. Trash and Marine Debris. Technical Report 1263. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221263Regional Monitoring, Southern California Bight Regional Monitoring Program, Southern California Stormwater Monitoring Coalition, Trash Pollution

Coffin, S., H. Bouwmeester, S. Brander, P. Damdimopoulou, T. Gouin, L. Hermabessiere, E. Khan, A.A. Koelmans, C.L. Lemieux, K. Teerds, M. Wagner, S.B. Weisberg, S. Wright. 2022. Development and application of a health-based framework for informing regulatory action in relation to exposure of microplastic particles in California drinking water. Microplastics and Nanoplastics 2:1-30.

Journal Article20221285Emerging Contaminants, Trash Pollution

Maruya, K.A., W. Lao, D.R. Vandervort, R. Fadness, M. Lyons, A.C. Mehinto. 2022. Bioanalytical and chemical-specific screening of contaminants of concern in three California (USA) watersheds. Heliyon 8:e09534.

Journal Article20221272Bioanalytical Cell Screening Assays, Emerging Contaminants

Eddy, M., K. Fritz, T.L. Nadeau, J. Kelso, S. Gross, B. Topping, R.F. Edgerton, R.D. Mazor. 2022. Development and Evaluation of the Beta Streamflow Duration Assessment Method (SDAM) for the Great Plains (GP). Technical Report 1292.A. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20221292.ABioassessment, Ecohydrology

Stein, E.D., J.S. Brown, A. Canney, M. Mirkhanian, H. Lowman, K. O'Connor, R. Clark. 2022. Prioritizing Stream Protection, Restoration and Management Actions Using Landscape Modeling and Spatial Analysis. Water 14:1375.

Journal Article20221264Bioassessment

Zimmer-Faust, A.G., J.F. Griffith, J. Freshwater, J. Peng, S. Goong, S.B. Weisberg. 2022. Relationships between indicators and pathogens in shellfish and water in Newport Bay, CA. Technical Report 1193. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221193Microbial Risk Assessment, Microbial Water Quality

Wade, T.J., B.F. Arnold, K.C. Schiff, J.M. Colford Jr, S.B. Weisberg, J.F. Griffith, A.P. Dufour. 2022. Health risks to children from exposure to fecally-contaminated recreational water. PLOS One DOI:10.1371/journal.pone.0266749.

Journal Article20221262Microbial Risk Assessment, Microbial Water Quality

Stein, E.D., J.S. Brown, A. Canney, M. Mirkhanian, H. Lowman, K. O'Connor, R. Clark. 2022. Prioritizing Stream Protection, Restoration and Management Actions Using Landscape Modeling and Spatial Analysis. Technical Report 1246. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221246Bioassessment, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Coffin, S., S.B. Weisberg. 2022. Understanding health efects pathways and thresholds: flling a critical need to support microplastics management. Microplastics and Nanoplastics 2:11.

Journal Article20221267Emerging Contaminants, Trash Pollution

Hawley, R.J., K. Russell, K.T. Taniguchi-Quan. 2022. Restoring geomorphic integrity in urban streams via mechanistically‑based storm water management: minimizing excess sediment transport capacity. Urban Ecosystems DOI:10.1007/s11252-022-01221-y.

Journal Article20221260Ecohydrology, Stormwater BMPs

Taniguchi-Quan, K.T., K. Irving, R.A. Wildman Jr., A. Poresky, J.R. Feldman, E.D. Stein, A. Aprahamian, C. Rivers, G. Sharp. 2022. Evaluation of Hydrologic Alteration to Inform Flow Management Decisions in South Orange County Coastal Watersheds. Technical Report 1245. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221245Ecohydrology

Grantham, T.E., D.M. Carlisle, J. Howard, B. Lane, R. Lusardi, A. Obester, S. Sandoval-Solis, B. Stanford, E.D. Stein, K.T. Taniguchi-Quan, S.M. Yarnell, J.K.H. Zimmerman. 2022. Modeling Functional Flows in California’s Rivers. Frontiers in Environmental Science 10:787473.

Journal Article20221255Ecohydrology

De Frond, H., L.M. Thornton Hampton, S. Kotar, K. Gesulga, C. Matuch, W. Lao, S.B. Weisberg, C.S. Wong, C.M. Rochman . 2022. Monitoring microplastics in drinking water: An interlaboratory study to inform effective methods for quantifying and characterizing microplastics. Chemosphere 298:134282.

Journal Article20221256Emerging Contaminants, Trash Pollution

Stein, E.D., J.S. Brown, N. Bishop, R. Kihslinger, B.J. Topping, P. Hough. 2022. An Integrated Framework for Evaluating Wetland and Stream Compensatory Mitigation. Technical Report 1209. Environmental Protection Agency. Washington, DC.

Technical Report20221209Bioassessment, Ecohydrology

Stein, E.D., J.S. Brown, T. Smith, C. Cox, N. Nibbelink, K. Sheehan Hill, B.J. Topping, P. Hough. 2022. An Integrated Framework for Evaluating Wetland and Stream Compensatory Mitigation - Summary of Pilot Applications. Technical Report 1210. Environmental Protection Agency. Washington, DC.

Technical Report20221210Bioassessment, Ecohydrology

Wolfand, J.M., K.T. Taniguchi-Quan, R. Abdi, E. Gallo, K. Irving, D. Philippus, J.B. Rogers, E.D. Stein, T.S. Hogue. 2022. Balancing water reuse and ecological support goals in an effluent dominated river. Journal of Hydrology X 15:100124.

Journal Article20221250Ecohydrology

Southern California Bight 2018 Regional Monitoring Program Sediment Quality Assessment Planning Committee. 2022. Southern California Bight 2018 Regional Monitoring Program Sediment Quality Assessment Synthesis Report. Technical Report 1248. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221248Harmful Algal Blooms, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program, Trash Pollution

Elko, N., D. Foster, G. Kleinheinz, B. Raubenheimer, S. Brander, J. Kinzelman, J.P. Kritzer, D. Munroe, C. Storlazzi, M. Sutula, A. Mercer, S. Coffin, C. Fraioli, L. Ginger, E. Morrison, G. Parent-Doliner, C. Akan, A. Canestrelli, M. DiBenedetto, J. Lang, J. Simm. 2022. Human and ecosystem health in coastal systems. Shore & Beach 90:64-91.

Journal Article20221254Climate Change, Eutrophication, Harmful Algal Blooms, Microbial Water Quality, Trash Pollution

Zimmer-Faust, A.G., J.F. Griffith, J.A. Steele, L. Asato, T. Chiem, S. Choi, A. Diaz, J. Guzman, M. Padilla, J. Quach-Cu, V. Ruiz, B. Santos, M. Woo, S.B. Weisberg. 2022. Assessing cross-laboratory performance for quantifying coliphage using EPA Method 1642. Journal of Applied Microbiology DOI:10.1111/jam.15523.

Journal Article20221268Microbial Risk Assessment, Microbial Water Quality

Stein, E.D., J.S. Brown, J.D. Siu. 2022. Aquatic Resource Type Conversion Evaluation Framework Version 2.0. Technical Report 1110. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221110Climate Change, Sea Level Rise

Walker, J.B., S. Rinehart, G. Greenberg-Pines, W.K. White, R. DeSantiago, D.A. Lipson, J.D. Long. 2022. Aboveground competition influences density-dependent effects of cordgrass on sediment biogeochemistry. Ecology and Evolution 12:e8722.

Journal Article20221265Bioassessment

Taniguchi-Quan, K.T., K. Irving, E.D. Stein, A. Poresky, R.A. Wildman Jr., A. Aprahamian, C. Rivers, G. Sharp, S.M. Yarnell, J.R. Feldman. 2022. Developing Ecological Flow Needs in a Highly Altered Region: Application of California Environmental Flows Framework in Southern California, USA. Frontiers in Environmental Science 10:787631.

Journal Article20221252Ecohydrology

Irving, K., K.T. Taniguchi-Quan, A. Aprahamian, C. Rivers, G. Sharp, R.D. Mazor, S. Theroux, A. Holt, R. Peek, E.D. Stein. 2022. Application of Flow-Ecology Analysis to Inform Prioritization for Stream Restoration and Management Actions. Frontiers in Environmental Science 9:787462.

Journal Article20221251Ecohydrology

Wang, P., J.K. Challis, Z.X. He, C.S. Wong, E.Y. Zeng. 2022. Effects of biofouling on the uptake of perfluorinated alkyl acids by organic-diffusive gradients in thin films passive samplers. Environmental Science: Processes & Impacts 24:242.

Journal Article20221253Emerging Contaminants

Reed, D.J., C. Brown, A.D. Steinman, M. Sutula, D.H. Wardrop. 2022. Restoration in the Context of Climate Change. in: D.H. Wardrop, W.G. Boggess, C. Brown, C.B. Burke, P.M. Dixon, C.T. Driscoll, K.R. Reddy, D.J. Reed, A.D. Steinman, M. Sutula, J.R. Walters (eds.), Progress Toward Restoring the Everglades: The Ninth Biennial Review—2022 pp. 137-168. National Academies of Sciences, Engineering and Medicine. Washington, D.C..

Book Chapter20221304Climate Change

Sutula, M., J. Butcher, M. Schmidt, C. Boschen, R.D. Mazor, D.J. Gillett, K.T. Taniguchi-Quan, K. Irving, D. Shultz. 2022. Science Supporting Decisions on Biostimulatory Targets and Management of Eutrophication in the Main Stem of the Santa Margarita River Watershed. Technical Report 1185. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20221185Climate Change, Eutrophication, Harmful Algal Blooms

Brander, S.M., J.W. White, B.M. DeCourten, K. Major, S.J. Hutton, R.E. Connon, A.C. Mehinto. 2022. Accounting for transgenerational effects of toxicant exposure in population models alters the predicted long-term population status. Environmental Epigenetics 8(1):1-12.

Journal Article20221303Emerging Contaminants

Ahmed, W., S.L. Simpson, P.M. Bertsch, K. Bibby, A. Bivins, L.L. Blackall, S. Bofill-Mas, A. Bosch, J. Brandão, P.M. Choi, M. Ciesielski, E. Donner, N. D'Souza, A.H. Farnleitner, D. Gerrity, R. Gonzalez, J.F. Griffith, P. Gyawali, C.N. Haas, K.A. Hamilton, H.C. Hapuarachchi, V.J. Harwood, R. Haque, G. Jackson, S.J. Khan, W. Khan, M. Kitajima, A. Korajkic, G. La Rosa, B.A. Layton, E. Lipp, S.L. McLellan, B. McMinn, G. Medema, S. Metcalfe, W.G. Meijer, J.F. Mueller, H. Murphy, C.C. Naughton, R.T. Noble, S. Payyappat, S. Petterson, T. Pitkänen, V.B. Rajal, B. Reyneke, F.A. Roman Jr, J.B. Rose, M. Rusiñol, M.J. Sadowsky, L. Sala-Comorera, Y.X. Setoh, S.P. Sherchan, K. Sirikanchana, W. Smith, J.A. Steele, R. Sabburg, E.M. Symonds, P. Thai, K.V. Thomas, J. Tynan, S. Toze, J. Thompson, A.S. Whiteley, J.C. Wong, D. Sano, S. Wuertz, I. Xagoraraki, Q. Zhang, A.G. Zimmer-Faust, O.C. Shanks. 2022. Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance. Science of the Total Environment DOI:10.1016/j.scitotenv.2021.149877.

Journal Article20221225Microbial Risk Assessment, Microbial Water Quality

Yarnell, S.M., A. Willis, A. Obester, R.A. Peek, R.A. Lusardi, J. Zimmerman, T.E. Grantham, E.D. Stein. 2022. Functional Flows in Groundwater-Influenced Streams: Application of the California Environmental Flows Framework to Determine Ecological Flow Needs. Frontiers in Environmental Science 9:788295.

Journal Article20221249Ecohydrology

Ramus, J., E. Garvey, S. Brown, E. Fassman-Beck, E.D. Stein. 2022. Assessing the State of Knowledge and Research Needs for Stormwater Harvesting. Technical Report 1305. The Water Research Foundation. Alexandria, VA .

Technical Report20221305Runoff Water Quality, Stormwater BMPs

Gouin, T., R. Ellis-Hutchings, L.M. Thornton Hampton, C.L. Lemieux, S.L. Wright. 2022. Screening and prioritization of nano- and microplastic particle toxicity studies for evaluating human health risks – development and application of a toxicity study assessment tool. Microplastics and Nanoplastics 2:2.

Journal Article20221266Emerging Contaminants, Trash Pollution

Abdi, R., A. Rust, J.M. Wolfand, K.T. Taniguchi-Quan, K. Irving, D. Philippus, E.D. Stein, T.S. Hogue. 2022. Thermal Suitability of the Los Angeles River for Cold Water Resident and Migrating Fish Under Physical Restoration Alternatives. Frontiers in Environmental Science 9:749085.

Journal Article20221241Ecohydrology

Vanderpont, A.K., C. Lobson, Z. Lu, K. Luong, M. Arentsen, T. Vera, D. Moore, M.S. White, R.S. Prosser, C.S. Wong, M.L. Hanson. 2022. Fate of thiamethoxam from treated seeds in mesocosms and response of aquatic invertebrate communities. Ecotoxicology DOI:10.1007/s10646-021-02500-8.

Journal Article20221239Emerging Contaminants

Peek, R., K. Irving, S.M. Yarnell, R. Lusardi, E.D. Stein, R.D. Mazor. 2022. Identifying Functional Flow Linkages Between Stream Alteration and Biological Stream Condition Indices Across California. Frontiers in Environmental Science 9:790667.

Journal Article20221240Bioassessment, Ecohydrology, Indices Of Biotic Integrity

Irving, K., S.C. Jähnig, M. Kuemmerlen. 2021. Disentangling the effect of climatic and hydrological predictor variables on benthic macroinvertebrate distributions from predictive models. Hydrobiologia 2021:1-20.

Journal Article20211243Bioassessment, Ecohydrology

Place, B.J., E.M. Ulrich, J.K. Challis, A. Chao, B. Du, K. Favela, Y. Feng, C.M. Fisher, P. Gardinali, A. Hood, A.M. Knolhoff, A.D. McEachran, S.L. Nason, S.R. Newton, B. Ng, J. Nuñez, K.T. Peter, A.L. Phillips, N. Quinete, R. Renslow, J.R. Sobus, E.M. Sussman, B. Warth, S. Wickramasekara, A.J. Williams. 2021. An Introduction to the Benchmarking and Publications for Non-Targeted Analysis Working Group. Analytical Chemistry 93:16289-16296.

Journal Article20211242Emerging Contaminants

Mazor, R.D., B. Topping, T.L. Nadeau, K.M. Fritz, J. Kelso, R. Harrington, W. Beck, K. McCune, A. Allen, R. Leidy, J.T. Robb, G.C.L. David, L. Tanner. 2021. User Manual for a Beta Streamflow Duration Assessment Method for the Western Mountains of the United States - Version 1.0. Technical Report 1222.A. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20211222.AEcohydrology

Mazor, R.D., B.J. Topping, T. Nadeau, K.M. Fritz, J.E. Kelso, R.A. Harrington, W.S. Beck, K. McCune, A.O. Allen, R. Leidy, J. Robb, G. David. 2021. Implementing an Operational Framework to Develop a Streamflow Duration Assessment Method: A Case Study from the Arid West United States. Water 13:3310.

Journal Article20211236Bioassessment, Ecohydrology

Mazor, R.D., B. Topping, T.L. Nadeau, K.M. Fritz, J. Kelso, R. Harrington, W. Beck, K. McCune, H. Lowman, A. Allen, R. Leidy, J.T. Robb, G.C.L. David. 2021. User Manual for a Beta Streamflow Duration Assessment Method for the Arid West of the United States. Technical Report 1100.A. U.S. Environmental Protection Agency. Washington, D.C..

Technical Report20211100.AEcohydrology

Abdalla, E.M.H., V. Pons, V. Stovin, S. De-Ville, E. Fassman-Beck, K. Alfredsen, T.M. Muthanna. 2021. Evaluating different machine learning methods to simulate runoff from extensive green roofs. Hydrology and Earth System Sciences 25:5917–5935.

Journal Article20211244Runoff Water Quality, Stormwater BMPs

Wang, S., W. Lao, Y. He, H. Shi, Q. Ye, J. Ma. 2021. Promoting the stability and adsorptive capacity of Fe3O4-embedded expanded graphite with an aminopropyltriethoxysilane-polydopamine coating for the removal of copper(II) from water. RSC Advances 11:35673-35686.

Journal Article20211293Runoff Water Quality

Schiff, K.C., M. Beck, E. Fassman-Beck. 2021. North Orange County Municipal Separate Storm Sewer System (MS4) Monitoring Evaluation. Technical Report 1221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211221Runoff Water Quality, Stormwater BMPs

Stein, E.D., J. Zimmerman, S.M. Yarnell, B. Stanford, B. Lane, K.T. Taniguchi-Quan, A. Obester, T.E. Grantham, R.A. Lusardi, S. Sandoval-Solis. 2021. The California Environmental Flows Framework: Meeting the Challenges of Developing a Large-Scale Environmental Flows Program. Frontiers in Environmental Science 9:769943.

Journal Article20211228Climate Change, Ecohydrology

Kessouri, F., K. McLaughlin, M. Sutula, D. Bianchi, M. Ho, J.C. McWilliams, L. Renault, J. Molemaker, C. Deutsch, A. Leinweber. 2021. Configuration and validation of an oceanic physical and biogeochemical model to investigate coastal eutrophication in the Southern California Bight. Journal of Advances in Modeling Earth Systems 13:e2020MS002296.

Journal Article20211229Climate Change, Ocean Acidification And Hypoxia

Walker, J.B., E.D. Grosholz, J.D. Long. 2021. Predicting burrowing crab impacts on salt marsh plants. Ecosphere 12:e03803.

Journal Article20211232Climate Change, Sea Level Rise

Bednarsek, N., R. Ambrose, P. Calosi, R.K. Childers, R.A. Feely, S.Y. Litvin, W.C. Long, J.I. Spicer, J. Strus, J. Taylor, F. Kessouri, M. Roethler, M. Sutula, S.B. Weisberg. 2021. Synthesis of Thresholds of Ocean Acidification Impacts on Decapods. Frontiers in Marine Science 8:651102.

Journal Article20211235Climate Change, Ocean Acidification And Hypoxia

Du, B., W. Lao, C.S. Wong, K. McLaughlin, K.C. Schiff. 2021. Scrutinizing surficial sediment along a 600-km-long urban coastal zone: Occurrence and risk assessment of fipronil and its three degradates. Science of the Total Environment DOI:10.1016/j.scitotenv.2021.151071.

Journal Article20211227Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Bueno de Mesquita, C.P., J. Zhou, S. Theroux, S.G. Tringe. 2021. Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern. Genes 12:1609.

Journal Article20211231Uncategorized

Estes Jr., M., C. Anderson, W. Appletans, N. Bax, N. Bednarsek, G. Canonico, S. Djavidnia, E. Escobar, P. Fietzek, M. Gregoire, E. Hazen, M. Kavanaugh, F. Lejzerowicz, F. Lombard, P. Miloslavich, K.O. Möller, J. Monk, E. Montes, H. Moustahfid, M.M.C. Muelbert, F. Muller-Karger, L.E. Peavey Reeves, E.V. Satterthwaite, J.O. Schmidt, A.M.M. Sequeira, W. Turner, L.V. Weatherdon. 2021. Enhanced monitoring of life in the sea is a critical component of conservation management and sustainable economic growth. Marine Policy 132:104699.

Journal Article20211234Bioassessment, Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Mazor, R.D., K. McCune. 2021. Review of flow duration methods and indicators of flow duration in the scientific literature: Western Mountains. Technical Report 1222. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211222Bioassessment, Ecohydrology

Ledezma-Espinoza, A., J.K. Challis, F. Roa-Gutierrez, A. Sanchez-Kopper, E. Castellon, C.S. Wong. 2021. Photolysis of the nonsteroidal anti-inflammatory drug sulindac: elucidation of kinetic behaviour and photodegradation pathways in water. Environmental Science Processes & Impacts 23:1405-1417.

Journal Article20211224Emerging Contaminants

Rothman, J.A., T.B. Loveless, J. Kapcia III, E.D. Adams, J.A. Steele, A.G. Zimmer-Faust, D. Wanless, M.L. Griffith, L. Mao, J. Chokry, J.F. Griffith, K.L. Whiteson, K. Langlois. 2021. RNA Viromics of Southern California Wastewater and Detection of SARS-CoV-2 Single-Nucleotide Variants. Applied and Environmental Microbiology 87:e01448-21.

Journal Article20211237Microbial Water Quality

Smith, J., D. Shultz, M.D.A. Howard, G. Robertson, V. Phonsiri, V. Renick, D.A. Caron, R.M. Kudela, K. McLaughlin. 2021. Persistent domoic acid in marine sediments and benthic infauna along the coast of Southern California. Harmful Algae DOI:10.1016/j.hal.2021.102103.

Journal Article20211223Eutrophication, Harmful Algal Blooms, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Bednarsek, N., K.A. Naish, R.A. Feely, C. Hauri, K. Kimoto, A.J. Hermann, C. Michel, A. Niemi, D. Pilcher. 2021. Integrated Assessment of Ocean Acidification Risks to Pteropods in the Northern High Latitudes: Regional Comparison of Exposure, Sensitivity and Adaptive Capacity. Frontiers in Marine Science 8:671497.

Journal Article20211230Climate Change, Ocean Acidification And Hypoxia

Wang, P., B. Du, J. Smith, W. Lao, C.S. Wong, E.Y. Zeng. 2021. Development and field evaluation of the organic-diffusive gradients in thin-films (o-DGT) passive water sampler for microcystins. Chemosphere 287:132079. DOI:10.3389/fmicb.2021.674214.

Journal Article20211220Emerging Contaminants, Eutrophication, Harmful Algal Blooms

McClary-Gutierrez, J.S., M.C.M. Mattioli, P. Marcenac, A.I. Silverman, A.B. Boehm, K. Bibby, M. Balliet, F.L. de los Reyes III, D. Gerrity, J.F. Griffith, P.A. Holden, D. Katehis, G. Kester, N. LaCross, E.K. Lipp, J. Meiman, R.T. Noble, D. Brossard, S.L. McLellan. 2021. SARS-CoV-2 Wastewater Surveillance for Public Health Action. Emerging Infectious Diseases 27:e210753.

Journal Article20211247Microbial Risk Assessment, Microbial Water Quality

Parks, A.N., D.J. Greenstein, K.C. Schiff. 2021. Marina del Rey Harbor Site-Specific Objective Study. Technical Report 1208. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211208Runoff Water Quality, Sediment Quality

Walker, J.B., A.L. Bijak, L. Blum. 2021. Genetic Diversity and Clonal Structure of Spartina alterniflora in a Virginia Marsh. Northeastern Naturalist 28:357-370.

Journal Article20211219Uncategorized

Sutula, M., D. Senn, L. Fono, M. Ho, F. Karimpour, F. Kessouri, A. King, A. Latker, P. Markle. 2021. Approaches to Quantifying Uncertainty in Coastal Eutrophication Numerical Modeling: A Workshop Summary. Technical Report . Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211211Eutrophication

McLaughlin, K., J. Davis, A. Bonnema, B. Du, G. Ichikawa, W. Jakl, W. Heim, K.C. Schiff. 2021. Regional assessment of contaminant bioaccumulation in sport fish tissue in the Southern California Bight, USA. Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2021.112798.

Journal Article20211217Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Zimmer-Faust, A.G., J.A. Steele, X. Xiong, C. Staley, M.L. Griffith, M.J. Sadowsky, M. Diaz, J.F. Griffith. 2021. A Combined Digital PCR and Next Generation DNA-Sequencing Based Approach for Tracking Nearshore Pollutant Dynamics Along the Southwest United States/Mexico Border. Frontiers in Marine Science DOI:10.3389/fmicb.2021.674214.

Journal Article20211218Microbial Source Tracking, Microbial Water Quality

Diner, R.E., D. Kaul, A. Rabines, H. Zheng, J.A. Steele, J.F. Griffith, A.E. Allen. 2021. Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes. mSystems DOI:10.1128/mSystems.00571-21.

Journal Article20211216Microbial Water Quality

Thornton Hampton, L.M., M.G. Finch, C.J. Martyniuk, B.J. Venables, M.K. Sellin-Jeffries. 2021. Developmental thyroid disruption causes long‑term impacts on immune cell function and transcriptional responses to pathogen in a small fish model. Scientific Reports DOI:10.1038/s41598-021-93929-8.

Journal Article20211213Emerging Contaminants

Mehinto, A.C., J. Smith, E. Wenger, B. Stanton, R. Linville, B.W. Brooks, M.A. Saluta, M.D.A. Howard. 2021. Synthesis of ecotoxicological studies on cyanotoxins in freshwater habitats – Evaluating the basis for developing thresholds protective of aquatic life in the United States. Science of the Total Environment DOI:10.1016/j.scitotenv.2021.148864.

Journal Article20211214Emerging Contaminants, Eutrophication, Harmful Algal Blooms

Smith, J., M. Sutula, K. Bourma-Gregson, M. Van Dyke. 2021. California Water Boards’ Framework and Strategy for Freshwater Harmful Algal Bloom Monitoring: Executive Synthesis. Technical Report 1141.A. California State Water Resources Control Board. Sacramento, CA.

Technical Report20211141.AEutrophication, Harmful Algal Blooms

Smith, J., M. Sutula, K. Bourma-Gregson, M. Van Dyke. 2021. California Water Boards’ Framework and Strategy for Freshwater Harmful Algal Bloom Monitoring: Full Report with Appendices. Technical Report 1141.B. California State Water Resources Control Board. Sacramento, CA.

Technical Report20211141.BEutrophication, Harmful Algal Blooms

McClary-Gutierrez, J.S., Z.T. Aanderud, M. Al-faliti, C. Duvallet, R. Gonzalez, J. Guzman, R.H. Holm, M.A. Jahne, R.S. Kantor, P. Katsivelis, K.G. Kuhn, L.M. Langan, C. Mansfeldt, S.L. McLellan, L.M. Mendoza-Grijalva, K.S. Murnane, C.C. Naughton, A.I. Packman, S. Paraskevopoulos, T.S. Radniecki, F.A. Roman, A. Shrestha, L.B. Stadler, J.A. Steele, B.M. Swalla, P. Vikesland, B. Wartell, C.J. Wilusz, J.C. Ching-Wong, A.B. Boehm, R.U. Halden, K. Bibby, J.D. Vela. 2021. Standardizing data reporting in the research community to enhance the utility of open data for SARS-CoV-2 wastewater surveillance. Environmental Science Water Research & Technology DOI:10.1039/d1ew00235j.

Journal Article20211215Microbial Risk Assessment, Microbial Water Quality

McLaughlin, K., M.D.A. Howard, G. Robertson, C.D.A. Beck, M. Ho, F. Kessouri, N.P. Nezlin, M. Sutula, S.B. Weisberg. 2021. Influence of anthropogenic nutrient inputs on rates of coastal ocean nitrogen and carbon cycling in the Southern California Bight, United States. Elementa: Science of the Anthropocene 9:00145.

Journal Article20211233Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Zhou, J., S. Theroux, C.P. Bueno de Mesquita, W.H. Hartman, Y. Tian, S.G. Tringe. 2021. Microbial drivers of methane emissions from unrestored industrial salt ponds. The ISME Journal DOI:10.1038/s41396-021-01067-w.

Journal Article20211226Climate Change

Sutula, M., M. Ho, A. Sengupta, F. Kessouri, K. McLaughlin, K. McCune, D. Bianchi. 2021. A baseline of terrestrial freshwater and nitrogen fluxes to the Southern California Bight, USA. Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2021.112669 .

Journal Article20211212Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Renault, L., J.C. McWilliams, F. Kessouri, A. Jousse, H. Frenzel, R. Chen, C. Deutsch. 2021. Evaluation of high-resolution atmospheric and oceanic simulations of the California Current System. Progress in Oceanography DOI:10.1016/j.pocean.2021.102564.

Journal Article20211206Climate Change, Ocean Acidification And Hypoxia

Deutsch, C., H. Frenzel, J.C. McWilliams, L. Renault, F. Kessouri, E. Howard, J.H. Liang, D. Bianchi, S. Yang. 2021. Biogeochemical variability in the California Current System. Progress in Oceanography DOI:10.1016/j.pocean.2021.102565.

Journal Article20211207Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Kessouri, F., J.C. McWilliams, D. Bianchi, M. Sutula, L. Renault, C. Deutsch, R.A. Feely, K. McLaughlin, M. Ho, E.M. Howard, N. Bednarsek, P. Damien, J. Molemaker, S.B. Weisberg. 2021. Coastal eutrophication drives acidification, oxygen loss, and ecosystem change in a major oceanic upwelling system. Proceedings of the National Academy of Sciences of the United States of America DOI:10.1073/pnas.2018856118.

Journal Article20211204Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Ho, M., J.M. Molemaker, F. Kessouri, J.C. McWilliams, T.W. Gallien. 2021. High-Resolution Nonhydrostatic Outfall Plume Modeling: Cross-Flow Validation. Journal of Hydraulic Engineering DOI:10.1061/(ASCE)HY.1943-7900.0001896.

Journal Article20211205Eutrophication

Chaves-Barquero, L.G., B.W. Humeniuk, K.H. Luong, N. Cicek, C.S. Wong, M.L. Hanson. 2021. Crushed recycled glass as a substrate for constructed wetland wastewater treatment: a case study of its potential to facilitate pharmaceutical removal. Environmental Science and Pollution Research DOI:10.1007/s11356-021-14483-4.

Journal Article20211200Emerging Contaminants

Bednarsek, N., P. Calosi, R.A. Feely, R.F. Ambrose, M. Byrne, K.Y. Chan, S. Dupont, J.L. Padilla-Gamino, J.I. Spicer, F. Kessouri, M. Roethler, M. Sutula, S.B. Weisberg. 2021. Synthesis of Thresholds of Ocean Acidification Impacts on Echinoderms. Frontiers in Marine Science DOI:10.3389/fmars.2021.602601.

Journal Article20211201Climate Change, Ocean Acidification And Hypoxia

Mekkes, L., W. Renema, N. Bednarsek, S.R. Alin, R.A. Feely, J. Huisman, P. Roessingh, K.T.C.A. Peijnenburg. 2021. Pteropods make thinner shells in the upwelling region of the California Current Ecosystem. Scientific Reports DOI:10.1038/s41598-021-81131-9.

Journal Article20211202Climate Change, Ocean Acidification And Hypoxia

Niemi, A., N. Bednarsek, C. Michel, R.A. Feely, W. Williams, K. Azetsu-Scott, W. Walkusz, J.D. Reist. 2021. Biological Impact of Ocean Acidification in the Canadian Arctic: Widespread Severe Pteropod Shell Dissolution in Amundsen Gulf. Frontiers in Marine Science DOI:10.3389/fmars.2021.600184.

Journal Article20211203Climate Change, Ocean Acidification And Hypoxia

Bay, S.M., D.J. Greenstein, A.N. Parks, D.J. Gillett, W. Lao, D.W. Diehl. 2021. Sediment Quality Assessment Technical Support Manual. Technical Report 777. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20210777Sediment Quality, Sediment Quality Assessment Frameworks

Gillett, D.J., L. Gilbane, K.C. Schiff. 2021. Characterizing Community Structure of Benthic Infauna From the Continental Slope of the Southern California Bight. Frontiers in Marine Science DOI:10.3389/fmars.2021.605858/full.

Journal Article20211197Bioassessment, Indices Of Biotic Integrity, Sediment Quality, Southern California Bight Regional Monitoring Program

Driscoll, C.T., W.G. Boggess, C. Brown, R.K. Craig, T. Dunne, M.S. Fennessy, J.W. Jawitz, E.A. Meselhe, D.J. Reed, J. Saiers, E.P. Smith, M. Sutula, J.R. Walters, D.H. Wardrop. 2021. Progress Toward Restoring the Everglades: The Eighth Biennial Review - 2020. Technical Report 1198. National Academies of Sciences, Engineering, and Medicine. Washington, DC.

Technical Report20211198Eutrophication, Harmful Algal Blooms

Rogers, J.B., E.D. Stein, M.W. Beck, K. Flint, A. Kinoshita, R.F. Ambrose. 2021. Modelling future changes to the hydrological and thermal regime of unaltered streams using projected changes in climate to support planning for sensitive species management. Ecohydrology DOI:10.1002/eco.2299.

Journal Article20211199Climate Change, Ecohydrology

Zimmer-Faust, A.G., J.F. Griffith, S.B. Weisberg. 2021. Quantification of Sources of Fecal Pollution at Mule Creek. Technical Report 1186. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211186Microbial Source Tracking, Microbial Water Quality

Wisenbaker, K., K. McLaughlin, D.W. Diehl, A. Latker, K. Stolzenbach, R. Gartman, K.C. Schiff. 2021. Southern California Bight 2018 Regional Marine Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates. Technical Report 1183. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211183Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Stein, E.D., K.T. Taniguchi-Quan, J. Wolfand, E. Gallo, K. Irving, D. Philippus, R. Abdi, V. Hennon, A. Tinoco, P. Mohammadi, A. Rust, T.S. Hogue. 2021. Process and Decision Support Tools for Evaluating Flow Management Targets to Support Aquatic Life and Recreational Beneficial Uses of the Los Angeles River: Los Angeles River Environmental Flows Project. Technical Report 1196. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211196Ecohydrology

Mehinto, A.C., L.M. Thornton Hampton, D.E. Vidal-Dorsch, N. Garcia-Reyero, M.A. Arick, K.A. Maruya, W. Lao, C.D. Vulpe, M. Brown-Augustine, A. Loguinov, S.M. Bay. 2021. Transcriptomic response patterns of hornyhead turbot (Pleuronichthys verticalis) dosed with polychlorinated biphenyls and polybrominated diphenyl ethers. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics DOI:10.1016/j.cbd.2021.100822.

Journal Article20211194Emerging Contaminants, Sediment Quality

Abdi, R., J.B. Rogers, A. Rust, J.M. Wolfand, D. Philippus, K.T. Taniguchi-Quan, K. Irving, E.D. Stein, T.S. Hogue. 2021. Simulating the thermal impact of substrate temperature on ecological restoration in shallow urban rivers. Journal of Environmental Management DOI:10.1016/j.jenvman.2021.112560.

Journal Article20211195Ecohydrology

Crain, C., K. Kezer, S. Steele, J. Owiti, S. Rao, M. Victorio, B. Austin, A. Volner, W. Draper, J.F. Griffith, J.A. Steele, M. Seifert. 2021. Application of ddPCR for detection of Enterococcus spp. in coastal water quality monitoring. Journal of Microbiological Methods DOI:10.1016/j.mimet.2021.106206.

Journal Article20211192Microbial Risk Assessment, Microbial Water Quality

Hale, T., S.L. Moore, P. Kauhanen, L. Flores, S.B. Weisberg. 2021. California Trash Monitoring Methods and Assessments Playbook. Technical Report 1189. San Francisco Estuary Institute. San Francisco, CA.

Technical Report20211189Regional Monitoring, Southern California Stormwater Monitoring Coalition, Trash Pollution

Hale, T., S.L. Moore, P. Kauhanen, L. Flores, S.B. Weisberg. 2021. Field Testing Report for the Statewide Trash Monitoring Methods Project. Technical Report 1190. San Francisco Estuary Institute. San Francisco, CA.

Technical Report20211190Regional Monitoring, Southern California Stormwater Monitoring Coalition, Trash Pollution

Charles, D.F., M.G. Kelly, R.J. Stevenson, S. Poikane, S. Theroux, A. Zgrundo, M. Cantonati. 2021. Benthic algae assessments in the EU and the US: Striving for consistency in the face of great ecological diversity . Ecological Indicators DOI:10.1016/j.ecolind.2020.107082.

Journal Article20211191Bioassessment, DNA Barcoding, Eutrophication, Indices Of Biotic Integrity

Tatters, A.O., J. Smith, R.M. Kudela, K. Hayashi, M.D.A. Howard, A.R. Donovan, K.A. Loftin, D.A. Caron. 2021. The tide turns: Episodic and localized cross-contamination of a California coastline with cyanotoxins. Harmful Algae DOI:10.1016/j.hal.2021.102003.

Journal Article20211188Eutrophication, Harmful Algal Blooms

Brand, M.W., L. Guo, E.D. Stein, B.F. Sanders. 2021. Multi-decadal simulation of estuarine sedimentation under sea level rise with a response-surface surrogate model. Advances in Water Resources DOI:10.1016/j.advwatres.2021.103876.

Journal Article20211187Climate Change, Sea Level Rise

Fassman-Beck, E., F. Saleh. 2021. Sources and Impacts of Uncertainty in Uncalibrated Bioretention Models Using SWMM 5.1.012. Journal of Sustainable Water in the Built Environment 7:04021006.

Journal Article20211238Runoff Water Quality, Stormwater BMPs

Stein, E.D., E.M. Gee, J.B. Adams, K. Irving, L.V. Niekerk. 2021. Advancing the Science of Environmental Flow Management for Protection of Temporarily Closed Estuaries and Coastal Lagoons. Water DOI:10.3390/w13050595.

Journal Article20211182Climate Change, Ecohydrology

Mazor, R.D., J.S. Brown, E.D. Stein, J.R. Olson, M.D. Robinson, A. Caudillo, S. Johnson, G. Mak, C. Clarke, K. O'Connor, K.K. Hammerstrom, R. Clark. 2021. Development of an Assessment Framework for Dry Ephemeral and Intermittent Streams in California and Arizona. Technical Report 1176. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211176Bioassessment, Ecohydrology, Indices Of Biotic Integrity

Smith, J., D. Shultz, M.D.A. Howard, G. Robertson, V. Phonsiri, V. Renick, D.A. Caron, R. Kudela, K. McLaughlin. 2021. Southern California Bight 2018 Regional Monitoring Program: Volume VIII. Harmful Algal Blooms. Technical Report 1170. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211170Eutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Mehinto, A.C., H.L. Schoenfuss, E. Wenger, D.W. Diehl, S.M. Bay. 2021. Application of an Effects‐Based Monitoring Strategy to Assess the Impact of Contaminants on Fish Health in an Urbanized Watershed. Environmental Toxicology and Chemistry 40:402-412.

Journal Article20211177Bioanalytical Cell Screening Assays, Emerging Contaminants

Ulses, C., C. Estournel, M. Fourrier, L. Coppola, F. Kessouri, D. Lefevre, P. Marsaleix. 2021. Oxygen budget of the north-western Mediterranean deep-convection region. Biogeosciences 18:937-960.

Journal Article20211178Climate Change, Ocean Acidification And Hypoxia

Sutula, M., M. Ho, A. Sengupta, F. Kessouri, K. McLaughlin, K. McCune, D. Bianchi. 2021. Dataset of terrestrial fluxes of freshwater, nutrients, carbon, and iron to the Southern California Bight, U.S.A.. Data in Brief DOI:10.1016/j.dib.2021.106802.

Journal Article20211179Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Howard, M.D.A., R.M. Kudela, K. Hayashi, A.O. Tatters, D.A. Caron, S. Theroux, S. Oehrle, M. Roethler, A. Donovan, K. Loftin, Z. Laughrey. 2021. Multiple co-occurring and persistently detected cyanotoxins and associated cyanobacteria in adjacent California lakes. Toxicon 192:1-14.

Journal Article20211172Eutrophication, Harmful Algal Blooms

Stein, E.D., J. Wolfand, R. Abdi, K. Irving, V. Hennon, K.T. Taniguchi-Quan, D. Philippus, A. Tinoco, A. Rust, E. Gallo, C. Bell, T.S. Hogue. 2021. Assessment of Aquatic Life Use Needs for the Los Angeles River. Technical Report 1154. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20211154Climate Change, Ecohydrology

Martyniuk, C.J., A.C. Mehinto, R.C. Colli-Dula, K.J. Kroll, N.J. Doperalski, D.S. Barber, N.D. Denslow. 2020. Transcriptome and physiological effects of toxaphene on the liver-gonad reproductive axis in male and female largemouth bass (Micropterus salmoides). Comparative Biochemistry and Physiology - Part D DOI:10.1016/j.cbd.2020.100746.

Journal Article20201156Emerging Contaminants

DeCourten, B.M., J.P. Forbes, H.K. Roark, N.P. Burns, K.M. Major, J.W. White, J. Li, A.C. Mehinto, R.E. Connon, S.M. Brander. 2020. Multigenerational and Transgenerational Effects of Environmentally Relevant Concentrations of Endocrine Disruptors in an Estuarine Fish Model. Environmental Science & Technology DOI:10.1021/acs.est.0c02892.

Journal Article20201157Emerging Contaminants

Kessouri, F., D. Bianchi, L. Renault, J.C. McWilliams, H. Frenzel, C.A. Deutsch. 2020. Submesoscale Currents Modulate the Seasonal Cycle of Nutrients and Productivity in the California Current System. Global Biogeochemical Cycles DOI:10.1029/2020GB006578.

Journal Article20201158Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Howard, E.M., H. Frenzel, F. Kessouri, L. Renault, D. Bianchi, J.C. McWilliams, C.A. Deutsch. 2020. Attributing Causes of Future Climate Change in the California Current System With Multimodel Downscaling. Global Biogeochemical Cycles DOI:10.1029/2020GB006646.

Journal Article20201159Climate Change, Ocean Acidification And Hypoxia

Tirpak, R.A., N. Afrooz, R.J. Winston, R. Valenca, K.C. Schiff, S.K. Mohanty. 2020. Conventional and amended bioretention soil media for targeted pollutant treatment: A critical review to guide the state of the practice. Water Research DOI:10.1016/j.watres.2020.1166480.

Journal Article20201160Runoff Water Quality, Stormwater BMPs

Rothman, J.A., T.B. Loveless, M.L. Griffith, J.A. Steele, J.F. Griffith, K.L. Whiteson. 2020. Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19. Microbiology Resource Announcements 9:e00907-20.

Journal Article20201161Microbial Source Tracking, Microbial Water Quality

Tian, Z., H. Zhao, K.T. Peter, M. Gonzalez, J. Wetzel, C. Wu, X. Hu, J. Prat, E. Mudrock, R. Hettinger, A.E. Cortina, R.G. Biswas, F.V.C. Kock, R. Soong, A. Jenne, B. Du, F. Hou, H. He, R. Lundeen, A. Gilbreath, R. Sutton, N.L. Scholz, J.W. Davis, M.C. Dodd, A. Simpson, J.K. McIntyre, E.P. Kolodziej. 2020. A ubiquitous tire rubber–derived chemical induces acute mortality in coho salmon. Science 371:185-189.

Journal Article20201162Emerging Contaminants

Harraka, G.T., J.T. Magnuson, B. Du, C.S. Wong, K. Maruya, D. Schlenk. 2020. Evaluating the estrogenicity of an effluent-dominated river in California, USA: Comparisons of in vitro and in vivo bioassays. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.143965.

Journal Article20201163Bioanalytical Cell Screening Assays, Emerging Contaminants

Maruya, K., C.S. Wong. 2020. Evaluating Analytical Methods for Detecting Unknown Chemicals in Recycled Water. Technical Report 1164. Water Research Foundation. Alexandria, VA.

Technical Report20201164Bioanalytical Cell Screening Assays, Emerging Contaminants

McLaughlin, K., K.C. Schiff, B. Du, J. Davis, A. Bonnema, G. Ichikawa, B. Jakl, W. Heim. 2020. Southern California Bight 2018 Regional Monitoring Program Volume V: Contaminant Bioaccumulation in Edible Sport Fish Tissue. Technical Report 1155. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201155Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Armbrust, K., J. Constantino, J. Hunt, C. Menzie, D. Parker. 2020. Findings and Recommendations of the Expert Review Panel for the Eastern San Joaquin Surface Water Monitoring Program. Technical Report 1153. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201153Uncategorized

Schiff, K.C., S.M. Bay. 2020. In Memorium: Donald J Reish. Zoosymposia DOI:10.11646/zoosymposia.19.1.4.

Journal Article20201165Uncategorized

Rochman, C.M., S.B. Weisberg, S.L. Moore, A. Whitley. 2020. The Unknowns of Microplastics: We cannot understand what we cannot measure. Applied Spectroscopy 74:966-967.

Journal Article20201166Emerging Contaminants, Trash Pollution

Diehl, D.W. 2020. Key to Combfishes and Greenlings (Families Zaniolepididae and Hexagrammidae). in: M.S. Love, J.K. Passarelli (eds.), Miller and Lea’s Guide to Coastal Marine Fishes of California pp. 175-178. UC Agriculture and Natural Resources. Davis, CA.

Book Chapter20201167Regional Monitoring, Southern California Bight Regional Monitoring Program

Diehl, D.W. 2020. Key to the Jacks (Family Carangidae). in: M.S. Love, J.K. Passarelli (eds.), Miller and Lea’s Guide to Coastal Marine Fishes of California pp. 235-242. UC Agriculture and Natural Resources. Davis, CA.

Book Chapter20201168Regional Monitoring, Southern California Bight Regional Monitoring Program

Love, M.S., D.W. Diehl. 2020. Key to Driftfishes (Family Nomeidae). in: J.K. Passarelli (ed.), pp. 342. UC Agriculture and Natural Resources. Davis, CA.

Book Chapter20201169Regional Monitoring, Southern California Bight Regional Monitoring Program

Henkel, S.K., L. Gilbane, A.J. Phillips, D.J. Gillett. 2020. Cross-Shelf Habitat Suitability Modeling for Benthic Macrofauna. Technical Report 1173. U.S. Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Technical Report20201173Bioassessment, Regional Monitoring

Poti, M., S.K. Henkel, J.J. Bizzarro, T.F. Hourigan, M.E. Clarke, C.E. Whitmire, A. Powell, M.M. Yoklavich, L. Bauer, A.J. Winship, M. Coyne, D.J. Gillett, L. Gilbane, J. Christensen, C.F.G. Jeffrey. 2020. Cross-Shelf Habitat Suitability Modeling: Characterizing Potential Distributions of Deep-Sea Corals, Sponges, and Macrofauna Offshore of the US West Coast. Technical Report 1171. U.S. Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Technical Report20201171Bioassessment, Regional Monitoring

Zimmer-Faust, A.G., J.A. Steele, J.F. Griffith, K.C. Schiff. 2020. The challenges of microbial source tracking at urban beaches for Quantitative Microbial Risk Assessment (QMRA). Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2020.111546.

Journal Article20201175Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Taylor, J., E.D. Stein, M.W. Beck, R.F. Ambrose. 2020. The impact of climate change induced alterations of streamflow and stream temperature on the distribution of riparian species. PLoS ONE DOI:10.1371/journal.pone.0242682.

Journal Article20201181Climate Change, Ecohydrology

Winfrey, B.K., M. Ho, W. Wang, Y.J. Li, R.F. Ambrose. 2020. Design aspects and plant species affect pollutant removal in Southern California stormwater biofilters. Blue-Green Systems DOI:10.2166/bgs.2020.012.

Journal Article20201180Runoff Water Quality, Stormwater BMPs

Theroux, S., R.D. Mazor, M.W. Beck, P.R. Ode, E.D. Stein, M. Sutula. 2020. Predictive biological indices for algae populations in diverse stream environments. Ecological Indicators DOI:10.1016/j.ecolind.2020.106421.

Journal Article20201135Bioassessment, DNA Barcoding, Eutrophication, Indices Of Biotic Integrity

Nissen, K.A., M. Borst, E. Fassman-Beck. 2020. Bioretention planter performance measured by lag and capture. Hydrological Processes DOI:10.1002/hyp.13927.

Journal Article20201152Runoff Water Quality, Stormwater BMPs

Bednarsek, N., J.A. Newton, M.W. Beck, S.R. Alin, R.A. Feely, N.R. Christman, T. Klinger. 2020. Severe biological effects under present-day estuarine acidification in the seasonally variable Salish Sea. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.142689.

Journal Article20201150Climate Change, Ocean Acidification And Hypoxia

Cai, W.J., R.A. Feely, J.M. Testa, M. Li, W. Evans, S.R. Alin, Y.Y. Xu, G. Pelletier, A. Ahmed, D.J. Greeley, J.A. Newton, N. Bednarsek. 2020. Natural and Anthropogenic Drivers of Acidification in Large Estuaries. Annual Review of Marine Science DOI:10.1146/annurev-marine-010419-011004.

Journal Article20201151Climate Change, Ocean Acidification And Hypoxia

Wang, P.F., J.K. Challis, K.H. Luong, T.C. Vera, C.S. Wong. 2020. Calibration of organic-diffusive gradients in thin films (o-DGT) passive samplers for perfluorinated alkyl acids in water. Chemosphere DOI:10.1016/j.chemosphere.2020.128325.

Journal Article20201146Emerging Contaminants

Fritz, K.M., T. Nadeau, J. Kelso, W.S. Beck, R.D. Mazor, R.A. Harrington, B.J. Topping. 2020. Classifying Streamflow Duration: The Scientific Basis and an Operational Framework for Method Development. Water DOI:10.3390/w12092545.

Journal Article20201147Bioassessment, Ecohydrology

Mazor, R.D., A. Santana, C. Endris, K. O'Connor. 2020. Assessing the representativeness of bioassessment samples using spatial statistical networks (SSNs) for watersheds in California: A guide for aquatic resource managers. Technical Report 1143. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201143Bioassessment, Indices Of Biotic Integrity

Du, B., Z. Tian, K.T. Peter, E.P. Kolodziej, C.S. Wong. 2020. Developing Unique Nontarget High-Resolution Mass Spectrometry Signatures to Track Contaminant Sources in Urban Waters. Environmental Science & Technology Letters DOI:10.1021/acs.estlett.0c00749.

Journal Article20201148Emerging Contaminants, Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Lao, W. 2020. Fiproles as a proxy for ecological risk assessment of mixture of fipronil and its degradates in effluent-dominated surface waters. Water Research DOI:10.1016/j.watres.2020.116510.

Journal Article20201149Emerging Contaminants

Wyer, H., D. Polhemus, S.L. Moore, S.B. Weisberg, S. Coffin, C.M. Rochman. 2020. Steps Scientists Can Take to Inform Aquatic Microplastics Management: A Perspective Informed by the California Experience. Applied Spectroscopy 74:971-975.

Journal Article20201145Trash Pollution

Gillett, D.J., L. Gisbane, K.C. Schiff. 2020. Benthic habitat condition of the continental shelf surrounding oil and gas platforms in the Santa Barbara Channel, Southern California. Marine Pollution Bulletin DOI:10.1016/j.marpolbul.2020.111662.

Journal Article20201144Bioassessment

Grantham, T., J. Mount, E.D. Stein, S.M. Yarnell. 2020. Making the Most of Water for the Environment: A Functional Flows Approach for California’s Rivers. Technical Report 1142. Public Policy Institute of California. San Francisco, CA.

Technical Report20201142Ecohydrology

Paul, M.J., B. Jessup, L.R. Brown, J.L. Carter, M. Cantonati, D.F. Charles, J. Gerritsen, D.B. Herbst, R. Stancheva, J. Howard, B. Isham, R. Lowe, R.D. Mazor, P.K. Mendex, P.R. Ode, A. O'Dowd, J. Olson, Y. Pan, A.C. Rehn, S. Spaulding, M. Sutula, S. Theroux. 2020. Characterizing benthic macroinvertebrate and algal biological condition gradient models for California wadeable Streams, USA. Ecological Indicators DOI:10.1016/j.ecolind.2020.106618.

Journal Article20201140Bioassessment, Indices Of Biotic Integrity

Howard, E.M., J.L. Penn, H. Frenzel, B.A. Seibel, D. Blanchi, L. Renault, F. Kessouri, M. Sutula, J.C. McWilliams, C. Deutsch. 2020. Climate-driven aerobic habitat loss in the California Current System. Science Advances DOI:10.1126/sciadv.aay3188 .

Journal Article20201139Climate Change, Ocean Acidification And Hypoxia

Winship, A.J., J.T. Thorson, M.E. Clarke, H.M. Coleman, B. Costa, S.E. Georgian, D.J. Gillett, A. Gruss, M.J. Henderson, T.F. Hourigan, D.D. Huff, N. Kreidler, J.L. Pirtle, J.V. Olson, M. Poti, C.N. Rooper, M.F. Sigler, S. Veihman, C.E. Whitmire. 2020. Good Practices for Species Distribution Modeling of Deep-Sea Corals and Sponges for Resource Management: Data Collection, Analysis, Validation, and Communication. Frontiers in Marine Science DOI:10.3389/fmars.2020.00303.

Journal Article20201138Bioassessment

McCune, K., D.J. Gillett, E.D. Stein. 2020. Methods and Guidance on Assessing the Ecological Functioning of Submerged Aquatic Vegetation in Southern California Estuaries and Embayments. Technical Report 1136. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201136Bioassessment

Taniguchi-Quan, K.T., R.D. Mazor, J.S. Brown, R. Guill, M. Yeager, A. Suter, J. Rudolph, W. Isham, S. Johnson. 2020. 2018-2019 Report on the SMC Stream Survey. Technical Report 1127. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201127Bioassessment, Ecohydrology, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Weisberg, S.B., F. Chan, J. Barry, A. Boehm, S. Busch, S. Cooley, R. Feely, L. Levin. 2020. Enhancing California’s Ocean Acidification and Hypoxia Monitoring Network. Technical Report 1137. Ocean Protection Council. Sacramento, CA.

Technical Report20201137Climate Change, Ocean Acidification And Hypoxia

Ulibarri, N., K.A. Goodrich, P. Wagle, M. Brand, R. Matthew, E.D. Stein, B.F. Sanders. 2020. Barriers and opportunities for beneficial reuse of sediment to support coastal resilience. Ocean and Coastal Management DOI:10.1016/j.ocecoaman.2020.105287.

Journal Article20201134Climate Change, Sea Level Rise

Martindale, S., S.B. Weisberg, S. Coffin. 2020. Status of Legislation and Regulatory Drivers for Microplastics in California. Technical Report 1133. Horiba. Irvine, CA.

Technical Report20201133Trash Pollution

Aylagas, E., A. Borja, X. Pochon, A. Zaiko, N. Keeley, K. Bruce, P. Hong, G.M. Ruiz, E.D. Stein, S. Theroux, N. Geraldi, A. Ortega, L. Gajdzik, D.J. Coker, Y. Katan, T. Hikmawan, A. Saleem, S. Alamer, B.H. Jones, C.M. Duarte, J. Pearman, S. Carvalho. 2020. Translational Molecular Ecology in practice: Linking DNA-based methods to actionable marine environmental management. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.140780.

Journal Article20201131Bioassessment, DNA Barcoding

Beck, M.W., C. O'Hara, J.S. Stewart-Lowndes, R.D. Mazor, S. Theroux, D.J. Gillett, B. Lane, G. Gearheart. 2020. The importance of open science for biological assessment of aquatic environments. PeerJ DOI:10.7717/peerj.9539.

Journal Article20201132Bioassessment

Du, B., C.S. Wong, K. McLaughlin, K.C. Schiff. 2020. Southern California Bight 2018 Regional Monitoring Program: Volume II. Sediment Chemistry. Technical Report 1130. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201130Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Bednarsek, N., G. Pelletier, A. Ahmed, R.A. Feely. 2020. Chemical Exposure Due to Anthropogenic Ocean Acidification Increases Risks for Estuarine Calcifiers in the Salish Sea: Biogeochemical Model Scenarios. Frontiers in Marine Science DOI:10.3389/fmars.2020.00580.

Journal Article20201129Climate Change, Ocean Acidification And Hypoxia

Du, B., J. Smith, K. Maruya, C.S. Wong. 2020. Comparison of Novel Passive Sampling Methods to Identify Cyanotoxins and their Sources. Technical Report 1123. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201123Emerging Contaminants, Eutrophication, Harmful Algal Blooms

Bay, S.M., S. Lowe, K. Gehrts. 2020. Survey of Sediment Quality in the Sacramento-San Joaquin Delta. Technical Report 686. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20200686Sediment Quality

Major, K.M., B.M. DeCourten, J. Li, M. Britton, M.L. Settles, A.C. Mehinto, R.E. Connon, S.M. Brander. 2020. Early Life Exposure to Environmentally Relevant Levels of Endocrine Disruptors Drive Multigenerational and Transgenerational Epigenetic Changes in a Fish Model. Frontiers in Marine Science DOI:10.3389/fmars.2020.00471.

Journal Article20201128Bioanalytical Cell Screening Assays, Emerging Contaminants

Ashby, K., A. Davis, G. Gearheart, J. Harwood, T. Hogue, D. Kleis, S. Luce, P. Ode, D. Senn. 2020. Southern California Stormwater Monitoring Coalition Five-Year Research Agenda 2019-2024. Technical Report 1126. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201126Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Brown, A.K., J. Ackerman, N. Cicek, C.S. Wong. 2020. In situ kinetics of human pharmaceutical conjugates and the impact of transformation, deconjugation, and sorption on persistence in wastewater batch bioreactors. Environmental Pollution DOI:10.1016/j.envpol.2020.114852.

Journal Article20201125Emerging Contaminants

Martyniuk, C.J., A.C. Mehinto, N.D. Denslow. 2020. Organochlorine pesticides: Agrochemicals with potent endocrinedisrupting properties in fish. Molecular and Cellular Endocrinology DOI:10.1016/j.mce.2020.110764.

Journal Article20201124Bioanalytical Cell Screening Assays, Emerging Contaminants

Mignon, C., O. Pasqueron de Fommervault, F. Kessouri. 2020. Emission Sources, Fluxes and Spatiotemporal Distribution of Nutritive Resources. in: C. Mignon, P. Nival, A. Sciandra (eds.), The Mediterranean Sea in the Era of Global Change 1: 30 Years of Multidisciplinary Study of the Ligurian Sea pp. 105-138. Wiley. New York, NY.

Book Chapter20201114Eutrophication

DeFlorio-Barker, S., D. Holman, R. Landolfi, B.F. Arnold, J.M. Colford, S.B. Weisberg, K.C. Schiff, E.A. Sams, T.J. Wade. 2020. Incidence and public health burden of sunburn among beachgoers in the United States. Preventive Medicine DOI:10.1016/j.ypmed.2020.106047.

Journal Article20201122Uncategorized

Parks, A.N., D.J. Greenstein, K. McLaughlin, K.C. Schiff. 2020. Southern California Bight 2018 Regional Monitoring Program: Volume I. Sediment Toxicity. Technical Report 1117. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201117Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Challis, J.K., A. Parajas, J.C. Anderson, E. Asiedu, J.W. Martin, C.S. Wong, M.S. Ross. 2020. Photodegradation of bitumen-derived organics in oil sands process-affected water. Environmental Science: Processes & Impacts 22:1243-1255.

Journal Article20201121Emerging Contaminants

Fassman-Beck, E., K.C. Schiff, D. Apt. 2020. Evaluating Potential Methods to Quantify Stormwater Capture. Technical Report 1116. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201116Runoff Water Quality, Stormwater BMPs

Beck, M.W., R.D. Mazor. 2020. A decision framework for evaluating bioassessment samples and landscape models. Technical Report 1115. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201115Bioassessment, Indices Of Biotic Integrity

Anderson, J.C., P. Jabari, A. Parajas, E. Loeb, K.H. Luong, A. Vahedi, C.S. Wong. 2020. Evaluation of cold-weather wastewater nitrification technology for removal of polar chemicals of emerging concern from rural Manitoba wastewaters. Chemosphere DOI:10.1016/j.chemosphere.2020.126711.

Journal Article20201120Emerging Contaminants, Eutrophication

Bay, S.M., A.N. Parks. 2020. Occurrence and Bioaccumulation of Dissolved Organochlorines in San Diego Bay. Technical Report 1109. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201109Sediment Quality

Wu, L., R. Wang, C.L. Huang, C.C. Wu, C.S. Wong, L.J. Bao, E.Y. Zeng. 2020. Impact of passive sampler protection apparatus on sediment porewater profiles of hydrophobic organic compounds. Chemosphere DOI:10.1016/j.chemosphere.2020.126534.

Journal Article20201119Eutrophication

Alava, J.J., P. Calle, A. Tirape, G. Biedenbach, O.A. Cadena, K. Maruya, W. Lao, W. Aguirre, P.J. Jimenez, G.A. Dominguez, G.D. Bossart, P.A. Fair. 2020. Persistent Organic Pollutants and Mercury in Genetically Identified Inner Estuary Bottlenose Dolphin (Tursiops truncatus) Residents of the Guayaquil Gulf, Ecuador: Ecotoxicological Science in Support of Pollutant Management and Cetacean Conservation. Frontiers in Marine Science DOI:10.3389/fmars.2020.00122.

Journal Article20201118Emerging Contaminants

Wang, S., W. Lao, H. Li, J. You. 2020. Measuring bioconcentration factors of sediment-associated fipronil in Lumbriculus variegatus using passive sampling techniques. Journal of Hazardous Materials DOI:10.1016/j.jhazmat.2020.122420.

Journal Article20201112Emerging Contaminants, Sediment Quality

Baalousha, M., J. Wang, M. Nabi, F. Loosli, R. Valenca, S.K. Mohanty, N. Afrooz, E. Cantando, N. Aich. 2020. Stormwater green infrastructures retain high concentrations of TiO2 engineered (nano)-particles. Journal of Hazardous Materials DOI:10.1016/j.jhazmat.2020.122335.

Journal Article20201113Runoff Water Quality, Stormwater BMPs

Nezlin, N.P., C. Beegan, A. Feit, J.R. Gully, A. Latker, K. McLaughlin, M.J. Mengel, G.L. Robertson, A. Steele, S.B. Weisberg. 2020. Colored Dissolved Organic Matter (CDOM) as a tracer of effluent plumes in the coastal ocean. Regional Studies in Marine Science DOI:10.1016/j.rsma.2020.101163.

Journal Article20201111Sediment Quality

Bednarsek, N., R.A. Feely, M.W. Beck, S.R. Alin, S.A. Siedlecki, P. Calosi, E.L. Norton, C. Saenger, J. Strus, D. Greeley, N.P. Nezlin, M. Roethler, J.I. Spicer. 2020. Exoskeleton Dissolution With Mechanoreceptor Damage in Larval Dungeness Crab Related to Severity of Present-day Ocean Acidification Vertical Gradients. Science of the Total Environment DOI:10.1016/j.scitotenv.2020.136610.

Journal Article20201108Climate Change, Ocean Acidification And Hypoxia

Harvey, M.E., S.N. Giddings, E.D. Stein, J.A. Crooks, C. Whitcraft, T. Gallien, J.L. Largier, L.L. Tiefenthaler, H. Meltzer, G. Pawlak, K. Thorne, K. Johnston, R. Ambrose, S.C. Schroeter, H.M. Page, H. Elwany. 2020. Effects of Elevated Sea Levels and Waves on Southern California Estuaries During the 2015–2016 El Niño. Estuaries and Coasts DOI:10.1007/s12237-019-00676-1.

Journal Article20201107Climate Change, Sea Level Rise

Sultana, R., M. Mroczek, A. Sengupta, S. Dallman, E.D. Stein. 2020. Improving Effective Impervious Estimates to Inform Stormwater Management. Water Resources Management DOI:10.1007/s11269-019-02474-7.

Journal Article20201106Ecohydrology, Runoff Water Quality, Stormwater BMPs

Yarnell, S.M., E.D. Stein, J.A. Webb, T. Grantham, R.A. Lusardi, J. Zimmerman, R.A. Peek, B.A. Lane, J. Howard, S. Sandoval-Solis. 2020. A Functional Flows Approach to Selecting Ecologically Relevant Flow Metrics for Environmental Flow Applications. River Research and Applications DOI:10.1002/rra.3575.

Journal Article20201104Ecohydrology

Stein, E.D., C.L. Doughty, J. Lowe, M. Cooper, E. Sloane, D. Bram. 2020. Establishing Targets for Regional Coastal Wetland Restoration Planning Using Historical Ecology and Future Scenario Analysis: The Past, Present, Future Approach. Estuaries and Coasts DOI:10.1007/s12237-019-00681-4.

Journal Article20201105Climate Change, Sea Level Rise

Chiotti, D., L. Ritter, D. Schlenk, C. Wilen, K.C. Schiff. 2020. Alternatives to Glyphosate for Vegetation Management in Los Angeles County. Technical Report 1103. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20201103Uncategorized

Li, X., M. Sivaganesan, C.A. Kelty, P. Clinton, J.R. Reichman, Y. Johnson, W. Matthews, S. Bailey, O.C. Shanks, A.G. Zimmer-Faust. 2019. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE DOI:10.1371/journal.pone.0216827.

Journal Article20191102Microbial Source Tracking, Microbial Water Quality

Mazor, R.D., B. Topping, R. Kwok, T. Nadeau, R. Leidy, K. Fritz, R. Harrington, J. Kelso, A. Allen, J. Robb, G. David, S. Jensen. 2019. Validation of Two Streamflow-duration Assessment Methods (SDAMs) in the Arid Southwest of the United States. Technical Report 1100. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191100Ecohydrology

Gomez-Alvarez, V., N.J. Ashbolt, J.F. Griffith, J.S. Domingo, J. Lu. 2019. Whole-Genome Sequencing of Four Campylobacter Strains Isolated from Gull Excreta Collected from Hobie Beach (Oxnard, CA, USA). Microbiology Resource Announcements 8:1-3.

Journal Article20191101Microbial Water Quality

Simons, A.L., R.D. Mazor, S. Theroux. 2019. Using Co‐occurrence Network Topology in Assessing Ecological Stress in Benthic Macroinvertebrate Communities. Ecology and Evolution DOI:10.1002/ece3.5751.

Journal Article20191099Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Giraldo, M.A., S. Dark, P. Pendleton, E.D. Stein, R.D. Mazor, J. Andreas. 2019. Environmental predictors of stream flow in semi-arid watersheds for biological assessments. Ecological Indicators 104:429-438.

Journal Article20191098Bioassessment, Ecohydrology

Smith, J., A. Lie, E.L. Seubert, N. Crowley, G. Robertson, D.A. Caron. 2019. Co-occurring Dissolved Algal Toxins Observed at Multiple Coastal Sites in Southern California via Solid Phase Adsorption Toxin Tracking. Toxicon DOI:10.1016/j.toxicon.2019.10.005.

Journal Article20191097Eutrophication, Harmful Algal Blooms

Gillett, D.J., L. Gisbane, K.C. Schiff. 2019. Benthic Infauna of the Southern California Bight Continental Slope: Characterizing Community Structure for the Development of an Index of Disturbance. Technical Report 1096. US Department of the Interior, Bureau of Ocean Energy Management. Camarillo, CA.

Technical Report20191096Bioassessment, Indices Of Biotic Integrity

Leon, P., N. Bednarsek, P. Welsham, K. Cook, S.E. Hartman, D. Wall-Palmer, J. Hindson, K. Mackenzie, L. Webster, E. Bresnan. 2019. Relationship between shell integrity of pelagic gastropods and carbonate chemistry parameters at a Scottish Coastal Observatory monitoring site. ICES Journal of Marine Science DOI:10.1093/icesjms/fsz178.

Journal Article20191095Climate Change, Ocean Acidification And Hypoxia

Mazor, R.D., V.H. Resh, D.M. Rosenberg. 2019. Use of Aquatic Insects in Bioassesment. in: R.W. Merritt, K.W. Cummins, M.B. Berg (eds.), An Introduction to the Aquatic Insects of North America pp. 141-164. Kendall Hunt Publishing Company. Dubuque, IA.

Book Chapter20191094Bioassessment, Indices Of Biotic Integrity

Baltar, F., B. Bayer, N. Bednarsek, S. Deppeler, R. Escribano, C.E. Gonzalez, R.L. Hansman, R.H. Mishra, M.A. Moran, D.J. Repeta, C. Robinson, E. Sintes, C. Tamburini, L.E. Valentin, G.J. Hemdi. 2019. Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems. Trends in Ecology and Evolution DOI:10.1016/j.tree.2019.07.003.

Journal Article20191092Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Canonico, G., P.L. Buttigieg, E. Montes, F.E. Muller-Karger, C. Steplen, D. Wright, A. Benson, B. Helmuth, M. Costello, I. Sousa-Pinto, H. Saeedi, J. Newton, W. Appeltabs, N. Bednarsek, L. Bodrossy, B.D. Best, A. Brandt, K.D. Goodwin, K. Iken, A.C. Marques, P. Miloslavich, M. Ostrowski, W. Turner, E.P. Achterberg, T. Barry, O. Defeo, G. Bigatti, L. Henry, B. Ramiro-Sanchez, P. Duran, T. Morato, J.M. Roberts, A. Garchia-Alegre, M.S. Cuadrado, B. Murton. 2019. Global Observational Needs and Resources for Marine Biodiversity. Frontiers in Marine Science 6:1-20.

Journal Article20191093Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Beck, M., R.D. Mazor, S. Theroux, K.C. Schiff. 2019. The Stream Quality Index: A multi-indicator tool for enhancing environmental management. Environmental and Sustainability Indicators DOI:10.1016/j.indic.2019.100004.

Journal Article20191091Bioassessment, Indices Of Biotic Integrity, Runoff Water Quality, Southern California Stormwater Monitoring Coalition

Beck, M., R.D. Mazor, S. Johnson, K. Wisenbaker, J. Westfall, P.R. Ode, R. Hill, C. Loflen, M. Sutula, E.D. Stein. 2019. Prioritizing Management Goals for Stream Biological Integrity Within the Developed Landscape Context. Freshwater Science DOI:10.1086/705996.

Journal Article20191090Bioassessment, Indices Of Biotic Integrity

Stein, E.D., Y. Sanchez. 2019. Review of Recreational Uses and Associated Flow Needs Along the Main-stem of Los Angeles River. Technical Report 1088. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191088Ecohydrology

Mazor, R.D., J. Olson, M. Robison, A. Caudillo, J.S. Brown. 2019. Assessing the biological condition of dry ephemeral and intermittent streams. Technical Report 1089. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191089Bioassessment, Indices Of Biotic Integrity

Steele, J.A., D. Ebentier, A.G. Zimmer-Faust, J.F. Griffith, K.C. Schiff. 2019. Los Coches Creek Microbial Source Tracking Study. Technical Report 1087. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191087Microbial Source Tracking, Microbial Water Quality

Beck, M., E.T. Sherwood, J.R. Henkel, K. Dorans, K. Ireland, P. Varela. 2019. Assessment of the Cumulative Effects of Restoration Activities on Water Quality in Tampa Bay, Florida. Estuaries and Coasts DOI:10.1007/s12237-019-00619-w.

Journal Article20191086Eutrophication, Harmful Algal Blooms

Le, C., S. Wu, C. Hu, M. Beck, X. Yang. 2019. Phytoplankton decline in the eastern North Pacific transition zone associated with atmospheric blocking. Geophysical Research Letters DOI:10.1111/gcb.14737.

Journal Article20191085Climate Change, Eutrophication

Taylor, J., E.D. Stein, M. Beck, K. Flint, A. Kinoshita. 2019. Vulnerability of Stream Biological Communities in Los Angeles and Ventura Counties to Climate Change Induced Alterations of Flow and Temperature. Technical Report 1084. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191084Climate Change, Ecohydrology

Beck, M., R.D. Mazor, S. Theroux, K.C. Schiff. 2019. The Stream Quality Index: A Multi-Indicator Tool for Enhancing Environmental Management Communication. Technical Report 1080. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191080Bioassessment, Indices Of Biotic Integrity, Runoff Water Quality, Southern California Stormwater Monitoring Coalition

Beck, M., K. Kittleson, K. O’Connor. 2019. Analysis of the Juvenile Steelhead and Stream Habitat Database, Santa Cruz County, California: Web Products and Recommendations. Technical Report 1082. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191082Bioassessment

Afrooz, N., M. Beck, T. Hale, L. McKee, K.C. Schiff. 2019. BMP Performance Monitoring Data Compilation to Support Reasonable Assurance Analysis. Technical Report 1081. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191081Runoff Water Quality, Stormwater BMPs

Gillett, D.J., R.D. Mazor, S.B. Norton. 2019. Selecting comparator sites for ecological causal assessment based on expected biological similarity. Freshwater Science 38:554-565.

Journal Article20191083Bioassessment

Lyon, K., D. Kacev, A. Preti, D.J. Gillett, H. Dwar, S. Kohin. 2019. Species-Specific Characteristics Influence Contaminant Accumulation Trajectories and Signatures Across Ontogeny in Three Pelagic Shark Species. Environmental Science & Technology DOI:10.1021/acs.est.8b07355.

Journal Article20191079Sediment Quality

Cossaboon, J.M., E. Hoh, S.J. Chivers, D.W. Weller, K. Danil, K.A. Maruya, N.G. Dodder. 2019. Apex marine predators and ocean health: Proactive screening of halogenated organic contaminants reveals ecosystem indicator species. Chemosphere 221:656-644.

Journal Article20191077Emerging Contaminants

Gudino-Elizondo, N., T.W. Biggs, R.L. Bingner, E.J. Langendoen, T. Kretzschmar, E.V. Taguas, K.T. Taniguchi-Quan, D. Liden, Y. Yuan. 2019. Modelling Runoff and Sediment Loads in a Developing Coastal Watershed of the US-Mexico Border. Water 11:1024.

Journal Article20191078Ecohydrology

Gillett, D.J., A.N. Parks, S.M. Bay. 2019. Calibration of the Multivariate AZTI Marine Biotic Index (M-AMBI) for Potential Inclusion into California Sediment Quality Objective Assessments in San Francisco Bay. Technical Report 1070. San Francisco Estuary Institute. Richmond, CA.

Technical Report20191070Bioassessment, Indices Of Biotic Integrity, Sediment Quality, Sediment Quality Assessment Frameworks

Stein, E.D., J.S. Brown, A. Barrera. 2019. Aquatic Resource Type Conversion Evaluation Framework: Literature Review and Summary of Existing State of Practice. Technical Report 1074. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191074Climate Change, Ecohydrology

Bednarsek, N., R.A. Feely, E.L. Howes, B.P.V. Hunt, F. Kessouri, P. Leon, R. Lischka, A.E. Maas, K. McLaughlin, N.P. Nezlin, M. Sutula, S.B. Weisberg. 2019. Systematic Review and Meta-Analysis Toward Synthesis of Thresholds of Ocean Acidification Impacts on Calcifying Pteropods and Interactions With Warming. Frontiers in Marine Science 6:227.

Journal Article20191076Climate Change, Ocean Acidification And Hypoxia

Simons, A.L., R.D. Mazor, E.D. Stein, S. Nuzhdin. 2019. Using alpha, beta, and zeta diversity in describing the health of stream‐based benthic macroinvertebrate communities. Ecological Applications DOI:10.1002/eap.1896.

Journal Article20191075Bioassessment, Indices Of Biotic Integrity

Buitenhuis, E.T., C.L. Quere, N. Bednarsek, R. Schiebel. 2019. Large Contribution of Pteropods to Shallow CaCO3 Export. Global Biogeochemical Cycles 33:458-468.

Journal Article20191071Climate Change, Ocean Acidification And Hypoxia

Schiff, K.C., J.F. Griffith, J.A. Steele, A.G. Zimmer-Faust, J.A. Soller. 2019. Inner Cabrillo Beach Microbial Source Tracking and Quantitative Microbial Risk Assessment (QMRA). Technical Report 1068. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191068Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Parker, S.R., S.K. Adams, R.W. Lammers, E.D. Stein, B.P. Bledsoe. 2019. Targeted hydrologic model calibration to improve prediction of ecologically-relevant flow metrics. Journal of Hydrology 573:546-556.

Journal Article20191069Ecohydrology

Engstrom-Ost, J., O. Glippa, R.A. Feely, J.E. Keister, S.R. Alin, B.R. Carter, A.K. McLaskey, K.A. Vuori, N. Bednarsek. 2019. Eco-physiological responses of copepods and pteropods to ocean warming and acidification. Scientific Reports 9:4748.

Journal Article20191072Climate Change, Ocean Acidification And Hypoxia

Janssen, A.W., S.L. Bush, N. Bednarsek. 2019. The shelled pteropods of the Northeastern Pacific Ocean (Mollusca: Heterobranchia, Pteropoda). Zoosymposia 13:305-346.

Journal Article20191073Climate Change, Ocean Acidification And Hypoxia

McCune, K., R.D. Mazor. 2019. Review of Flow Duration Methods and Indicators of Flow Duration in the Scientific Literature: Arid Southwest. Technical Report 1063. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20191063Bioassessment, Ecohydrology

Lao, W., K.A. Maruya, D. Tsukada. 2019. An exponential model based new approach for correcting aqueous concentrations of hydrophobic organic chemicals measured by polyethylene passive samplers. Science of the Total Environment 646:11-18.

Journal Article20191044Emerging Contaminants

Schiff, K.C., K. McLaughlin, S.L. Moore, Y. Cao. 2019. Southern California Bight. in: C. Sheppard (ed.), World Seas: An Environmental Evaluation pp. 465-482. Academic Press. London, UK.

Book Chapter20191051Regional Monitoring, Southern California Bight Regional Monitoring Program

Doughty, C.L., K.C. Cavanaugh, R.F. Ambrose, E.D. Stein. 2019. Evaluating regional resiliency of coastal wetlands to sea level rise through hypsometry‐based modeling. Global Change Biology 25:78-92.

Journal Article20191056Climate Change, Sea Level Rise

Bednarsek, N., R.A. Feely, M. Beck, O. Glippa, M. Kanerva, J. Engstrom-Ost. 2018. El Niño-Related Thermal Stress Coupled With Upwelling-Related Ocean Acidification Negatively Impacts Cellular to Population-Level Responses in Pteropods Along the California Current System With Implications for Increased Bioenergetic Costs. Frontiers in Marine Science 5:486.

Journal Article20181065Climate Change, Ocean Acidification And Hypoxia

Zimmer-Faust, A.G., C.A. Brown, A. Manderson. 2018. Statistical models of fecal coliform levels in Pacific Northwest estuaries for improved shellfish harvest area closure decision making. Marine Pollution Bulletin 137:360-369.

Journal Article20181061Microbial Water Quality

Lane, B.A., S. Sandoval-Solis, E.D. Stein, S.M. Yarnell, G.B. Pasternack, H.E. Dahlke. 2018. Beyond Metrics? The Role of Hydrologic Baseline Archetypes in Environmental Water Management. Environmental Management DOI:10.1007/s00267-018-1077-7.

Journal Article20181060Ecohydrology

Afrooz, A.R.M.N., K.C. Schiff. 2018. Southern California Stormwater Monitoring Coalition Unified Approach to Stormwater Monitoring. Technical Report 1059. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181059Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Coates, J., K.C. Schiff, R.D. Mazor, D.J. Pondella II, R.A. Schaffner, E. Whiteman. 2018. Development of a biological condition assessment index for shallow, subtidal rocky reefs in Southern California, USA. Marine Ecology DOI:10.1111/maec.12471.

Journal Article20181062Bioassessment, Indices Of Biotic Integrity, Regional Monitoring

Afrooz, A.R.M.N., A.K. Pitol, D. Kitt, A.B. Boehm. 2018. Role of microbial cell properties on bacterial pathogen and bacteriophage removal in biochar-modified biofilters. Environmental Science Water Research & Technology 4:2160-2169.

Journal Article20181067Microbial Water Quality, Runoff Water Quality, Stormwater BMPs

Collins, J., E.D. Stein. 2018. California Rapid Assessment Method for Wetlands and Riparian Areas (CRAM). in: J. Dorney, R. Savage, R. Tiner, P. Adamus (eds.), Wetland and Stream Rapid Assessments: Development, Validation, and Application pp. 353-362. Elsevier Publishers. London, UK.

Book Chapter20181058Bioassessment

Greenstein, D.J., A.N. Parks, S.M. Bay. 2018. Using spatial and temporal variability data to optimize sediment toxicity identification evaluation (TIE) study designs. Integrated Environmental Assessment and Management 15:248-258.

Journal Article20181066Sediment Quality

Lowe, J., E.D. Stein, E. Beller, J. Collins, M. Cooper, J. Crooks, H. Dennis, C. Doughty, G. Gauthier, J. Gonzalez, K. Kalchmayr, S. Kelly, K. McKnight, A. Richey, A. Robinson, E. Sloane, M. Sutula, C. Whitcraft. 2018. Wetlands on the Edge: The Future of Southern California’s Wetlands: Regional Strategy 2018. Technical Report 1055. California State Coastal Conservancy. Oakland, CA.

Technical Report20181055Climate Change, Sea Level Rise

Peter, K.T., Z. Tian, C. Wu, P. Lin, S. White, B. Du, J.K. McIntyre, N.L. Scholz, E.P. Kolodziej. 2018. Using High-Resolution Mass Spectrometry to Identify Organic Contaminants Linked to Urban Stormwater Mortality Syndrome in Coho Salmon. Environmental Science and Technology 52:10317-10327.

Journal Article20181057Emerging Contaminants, Runoff Water Quality

Bittick, S.J., M. Sutula, P. Fong. 2018. A tale of two algal blooms: Negative and predictable effects of two common bloom-forming macroalgae on seagrass and epiphytes. Marine Environmental Research 140:1-9.

Journal Article20181064Eutrophication, Harmful Algal Blooms

Rehn, A.C., R.D. Mazor, P.R. Ode. 2018. An Index to Measure the Quality of Physical Habitat in California Wadeable Streams. Technical Report 1053. Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20181053Bioassessment, Indices Of Biotic Integrity

Guo, L., M. Brand, B.F. Sanders, E. Foufoula-Georgiou, E.D. Stein. 2018. Tidal asymmetry and residual sediment transport in a short tidal basin under sea level rise. Advances in Water Resources 121:1-8.

Journal Article20181045Climate Change, Sea Level Rise

McLaughlin, K., N.P. Nezlin, S.B. Weisberg, A.G. Dickson, J.A.T. Booth, C.L. Cash, A. Feit, J.R. Gully, M.D.A. Howard, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez. 2018. Seasonal patterns in aragonite saturation state on the southern California continental shelf. Continental Shelf Research 167:77–86.

Journal Article20181050Climate Change, Ocean Acidification And Hypoxia, Regional Monitoring, Southern California Bight Regional Monitoring Program

Parks, A.N., M.A. Cashman, M.M. Perron, L. Portis, M.G. Cantwell, D.R. Katz, K.T. Ho, R.M. Burgess. 2018. Magnitude of Acute Toxicity of Marine Sediments Amended with Conventional Copper and Nanocopper. Environmental Toxicology 9999:1-5.

Journal Article20181052Sediment Quality

Smith, J., P. Connell, R.H. Evans, A.G. Gellene, M.D.A. Howard, B.H. Jones, S. Kaveggia, L. Palmer, A. Schnetzer, B.N. Seegers, E.L. Seubert, A.O. Tatters, D.A. Caron. 2018. A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California. Harmful Algae DOI:10.1016/j.hal.2018.07.007.

Journal Article20181049Climate Change, Emerging Contaminants, Eutrophication, Harmful Algal Blooms

Cao, Y., M.R. Raith, J.F. Griffith. 2018. Testing of General and Human-Associated Fecal Contamination in Waters. in: G. Karlin-Neumann, F. Bizouarn (eds.), Digital PCR: Methods and Protocols pp. 127-140. Humana Press. New York, NY.

Book Chapter20181046Microbial Source Tracking, Microbial Water Quality

Maruya, K.A., A.C. Mehinto, W. Lao, R. Sutton, T. Jabusch, J. Sun, D. Lin, J. Davis, R. Fadness. 2018. Pilot Monitoring of Constituents of Emerging Concern (CECs) in the Russian River Watershed (Region 1). Technical Report 1020. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181020Bioanalytical Cell Screening Assays, Emerging Contaminants

Howard, J.K., K.A. Fesenmyer, T.E. Grantham, J.H. Viers, P.R. Odes, P.B. Moyle, S.J. Kupferburg, J.L. Furnish, A. Rehn, J. Slusark, R.D. Mazor, N.R. Santos, R.A. Peek, A.N. Wright. 2018. A Freshwater Blueprint for California: Prioritizing freshwater habitat for conservation in California to maximize biodiversity and leverage existing protected areas. Freshwater Science DOI:10.1086/697996.

Journal Article20181036Climate Change, Ecohydrology

Sengupta, A., S.K. Adams, B.P. Bledsoe, E.D. Stein, K. McCune, R.D. Mazor. 2018. Tools for managing hydrologic alteration on a regional scale: Estimating changes in flow characteristics at ungauged sites. Freshwater Biology DOI:10.1111/fwb.13074.

Journal Article20181019Ecohydrology

Clatterbuck, C.A., R.L. Lewison, N.G. Dodder, C. Zeeman, K.C. Schiff. 2018. Seabirds as regional biomonitors of legacy toxicants on an urbanized coastline. Science of the Total Environment DOI:10.1016/j.scitotenv.2017.

Journal Article20181023Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Mehinto, A.C., K.J. Kroll, B.S. Jayasinghe, C.M. Lavelle, D. VanDervort, O.K. Adeyemo, S.M. Bay, K.A. Maruya, N.D. Denslow. 2018. Linking In Vitro Estrogenicity to Adverse Effects in the Inland Silverside (Menidia beryllina). Environmental Toxicology and Chemistry 37:884-892.

Journal Article20181021Bioanalytical Cell Screening Assays, Emerging Contaminants

Sengupta, A., R.J. Hawley, E.D. Stein. 2018. Predicting Hydromodification in Streams using Non-Linear Memory Based Algorithms. A Southern California case study. Journal of Water Resources Planning and Management DOI:10.1061/(ASCE)WR.1943-5452.0000853.

Journal Article20181006Ecohydrology

Steele, J.A., A.D. Blackwood, J.F. Griffith, R.T. Noble, K.C. Schiff. 2018. Quantification of pathogens and markers of fecal contamination during storm events along popular surfing beaches in San Diego, California. Water Research 136:137-149.

Journal Article20181026Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Wall-Palmer, D., A.K. Burridge, E. Goetze, F.R. Stokvis, A.W. Janssen, L. Mekkes, M. Moreno-Alcántara, N. Bednarsek, T. Schiøtte, M.V. Sørensen, C.W. Smart, K.T.C.A. Peijnenburg. 2018. Biogeography and genetic diversity of the atlantid heteropods. Progress in Oceanography 160:1-25.

Journal Article20181038Climate Change, Ocean Acidification And Hypoxia

Jonker, M.T.O., S.A. van der Heijden, D. Adelman, J.N. Apell, R.M. Burgess, Y. Choi, L.A. Fernandez, G.M. Flavetta, U. Ghosh, P.M. Gschwend, S.E. Hale, M. Jalalizadeh, M. Khairy, M.A. Lampi, W. Lao, R. Lohman, M.J. Lydy, K.A. Maruya, S.A. Nutile, A.M.P. Oen, M.I. Rakowska, D. Reible, T.P. Rusina, F. Smedes, Y. Wu. 2018. Advancing the Use of Passive Sampling in Risk Assessment and Management of Sediments Contaminated with Hydrophobic Organic Chemicals: Results of an International Ex Situ Passive Sampling Interlaboratory Comparison. Environmental Science and Technology 52:3574-3582.

Journal Article20181022Sediment Quality

Kessouri, F., C. Ulses, C. Estournel, P. Marsaleix, T. Severin, M. Pujo-Pay, J. Caparros, P. Raimbault, O. Pasqueron de Fommervault, F. D'Ortenzio, V. Taillandier, P. Testor, P. Conan. 2018. Nitrogen and Phosphorus Budgets in the Northwestern Mediterranean Deep Convection Region. Journal of Geophysical Research: Oceans 12:9429-9454.

Journal Article20181016Eutrophication

Kacev, D., D.J. Gillett, A.F. de Carvalho, C. Cash, S. Walther, C.D. Larsen, A. Thompson, L. Thompson, N. Bowlin, K. Goodwin, E.D. Stein. 2018. Assessment of Ichthyoplankton Metabarcoding for Routine Monitoring. Technical Report 1031. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181031Bioassessment, DNA Barcoding

Feely, R.A., R.R. Okazaki, W.J. Cai, N. Bednarsek, S.R. Alin, R.H. Bryne, A. Fassbender. 2018. The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research 158:50-60.

Journal Article20181025Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Hallenbeck, T., S.J. Steinberg, A. Lanier, T. Welch. 2018. Extending Esri Geoportal Server to Meet the Needs of the West Coast Ocean Data Network and Inform Regional Ocean Management. in: D.J. Wright (ed.), Ocean Solutions Earth Solutions: Second Edition pp. 167-183. Esri Press. Redlands, CA.

Book Chapter20181027Regional Monitoring

Bajer, P.G., M. Beck, P.J. Hundt. 2018. Effect of non-native versus native invaders on macrophyte richness: Are carp and bullheads ecological proxies?. Hydrobiologia 815:1-13.

Journal Article20181030Eutrophication

Mazor, R.D., J.T. May, A. Sengupta, K. McCune, B.P. Bledsoe, E.D. Stein. 2018. Tools for managing hydrologic alteration on a regional scale: Setting targets to protect stream health. Freshwater Biology DOI:10.1111/fwb.13062.

Journal Article20181015Ecohydrology

Beck, M., T.W. Jabusch, P.R. Trowbridge, D.B. Senn. 2018. Four decades of water quality change in the upper San Francisco Estuary. Estuarine, Coastal and Shelf Science 212:11-22.

Journal Article20181043Eutrophication

Stein, E.D., J. Taylor, A. Sengupta, S.M. Yarnell. 2018. Evaluating the Effect of Changes in Flow and Water Temperature on Stream Habitats and Communities in the Los Angeles/Ventura Region. Technical Report 1034. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181034Climate Change, Ecohydrology

Bay, S.M., D.J. Greenstein, A.N. Parks. 2018. Spatial and Temporal Variability in Sediment Toxicity Identification Evaluations. Technical Report 1014. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181014Sediment Quality

Pelletier, M.C., D.J. Gillett, A. Hamilton, T. Grayson, V. Hansen, E.W. Leppo, S.B. Weisberg, A. Borja. 2018. Adaptation and application of multivariate AMBI (M-AMBI) in US coastal waters. Ecological Indicators 89:818-827.

Journal Article20181028Bioassessment, Indices Of Biotic Integrity

Bausch, A.R., M.A. Gallego, J. Harianto, P. Thibodeau, N. Bednarsek, J.N. Havenhand, T. Klinger. 2018. Influence of bacteria on shell dissolution in dead gastropod larvae and adult Limacina helicina pteropods under ocean acidification conditions. Marine Biology 165:40.

Journal Article20181037Climate Change, Ocean Acidification And Hypoxia

Mazor, R.D., M. Beck, J.S. Brown. 2018. 2017 Report on the Southern California Stormwater Monitoring Coalition Regional Stream Survey. Technical Report 1029. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181029Bioassessment, DNA Barcoding, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Drewes, J.E., P. Anderson, N. Denslow, W. Jakubowski, A. Olivieri, D. Schlenk, S. Snyder. 2018. Monitoring Strategies for Constituents of Emerging Concern (CECs) in Recycled Water. Technical Report 1032. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20181032Bioanalytical Cell Screening Assays, Emerging Contaminants

Parks, A.N., M.G. Cantwell, D.R. Katz, M.A. Cashman, T.P. Luxton, K.T. Ho, R.M. Burgess. 2018. Assessing the Release of Copper from Nanocopper-Treated and Conventional Copper-Treated Lumber into Marine Waters I: Concentration and Rates. Environmental Toxicology and Chemistry 37:1956-1968.

Journal Article20181040

Parks, A.N., M.G. Cantwell, D.R. Katz, M.A. Cashman, T.P. Luxton, J.G. Clar, M.M. Perron, L. Portis, K.T. Ho, R.M. Burgess. 2018. Assessing the release of copper from nanocopper-treated and conventional copper-treated lumber into marine waters II: Forms and bioavailability. Environmental Toxicology and Chemistry 37:1969-1979.

Journal Article20181041

Ulrich, E.M., P.L. TenBrook, L.M. McMillan, Q. Wang, W. Lao. 2018. Enantiomer-Specific Measurements of Current-Use Pesticides in Aquatic Systems. Environmental Toxicology and Chemistry 37:99-106.

Journal Article20181013Emerging Contaminants, Sediment Quality

Saarman, E.T., B. Owens, S.N. Murray, S.B. Weisberg, R.F. Ambrose, J.C. Field, K.J. Nielsen, M.H. Carr. 2018. An Ecological Framework for Informing Permitting Decisions on Scientific Activities in Protected Areas. Ecological Applications 13:e0199126.

Journal Article20181042Regional Monitoring

Nezlin, N.P., K. McLaughlin, J.A.T. Booth, C.L. Cash, D.W. Diehl, K.A. Davis, A. Feit, R. Goericke, J.R. Gully, M.D.A. Howard, S Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez, L. Washburn, S.B. Weisberg. 2018. Spatial and Temporal Patterns of Chlorophyll Concentration in the Southern California Bight. Journal of Geophysical Research: Oceans 123:231-245.

Journal Article20181017Eutrophication, Regional Monitoring

Beck, M.W., K. Cressman, C. Griffin, J. Caffrey. 2018. Water Quality Trends Following Anomalous Phosphorus Inputs to Grand Bay, Mississippi, USA . Gulf and Caribbean Research 29:1-14.

Journal Article20181018Eutrophication

SCCWRP Staff. 2018. SCCWRP 2018 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2018 Annual ReportSouthern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20182018.01

Arthington, A.H., J.G. Kennen, E.D. Stein, J.A. Webb. 2018. Recent advances in environmental flows science and water management - Innovation in the Anthropocene. Freshwater Biology DOI:10.1111/fwb.13108.

Journal Article20181033Climate Change, Ecohydrology

Kennen, J.G., E.D. Stein, J.A. Webb. 2018. Evaluating and managing environmental water regimes in a water-scarce and uncertain future. Freshwater Biology DOI:10.1111/fwb.13104.

Journal Article20181035Climate Change, Ecohydrology

Kessouri, F., C. Ulses, C. Estournel, P. Marsaleix, F. D'Ortenzio, T. Severin, V. Taillandier, P. Conan. 2018. Vertical Mixing Effects on Phytoplankton Dynamics and Organic Carbon Export in the Western Mediterranean Sea. Geophysical Research: Oceans DOI:10.1002/2016JC012669.

Journal Article20181039Eutrophication

Denslow, N., K. Kroll, S. Jayasinghe, O. Adeyemo, C. Lavelle, E. Li, A.C. Mehinto, S.M. Bay, K.A. Maruya. 2017. Linkage of In Vitro Assay Results With In Vivo Endpoints Final Report - Phase 1 and 2. Technical Report 983. San Francisco Estuary Institute. Richmond, CA.

Technical Report20170983Bioanalytical Cell Screening Assays, Emerging Contaminants

SCCWRP Staff. 2017. SCCWRP 2017 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2017 Annual ReportSouthern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20172017.01

Stein, E.D., A. Sengupta, R.D. Mazor, K. McCune, B.P. Bledsoe, K. McCune, S. Adams. 2017. Application of regional flow-ecology relationships to inform watershed management decisions: Application of the ELOHA framework in the San Diego River watershed, California, USA. Ecohydrology 10:1869.

Journal Article20170992Climate Change, Ecohydrology

Stein, E.D., J.S. Brown, R.D. Mazor. 2017. Transferability of bioassessment indices among water body types and ecoregions: A California experiment in wetland assessment. Ecological Indicators 81:65-73.

Journal Article20170988Bioassessment, Indices Of Biotic Integrity

Sarman, E.T., B. Owens, R.F. Ambrose, M.H. Carr, J.C. Field, S.N. Murray, K.J. Nielsen, S.B. Weisberg. 2017. A Framework for Informing Permitting Decisions on Scientific Activities in Marine Protected Areas. Technical Report 991. Ocean Protection Council Science Advisory Team. Sacramento, CA.

Technical Report20170991Regional Monitoring

Gillett, D.J., L.L. Lovell, K.C. Schiff. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VI. Benthic Infauna. Technical Report 971. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170971Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Steele, J.A., J.F. Griffith, R. Noble, K.C. Schiff. 2017. Tracking Human Fecal Sources in an Urban Watershed During Wet Weather. Technical Report 1002. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20171002Microbial Source Tracking, Microbial Water Quality

Soller, J.A., M. Schoen, J.A. Steele, J.F. Griffith, K.C. Schiff. 2017. Incidence of gastrointestinal illness following wet weather recreational exposures: Harmonization of quantitative microbial risk assessment with an epidemiologic investigation of surfers. Water Research 121:280-289.

Journal Article20170994Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Safran, S., S. Baumgarten, E. Beller, J. Crooks, R. Grossinger, J. Lorda, T. Longcore, D. Bram, S. Dark, E.D. Stein, T. McIntosh. 2017. Tijuana River Valley Historical Ecology Investigation. Technical Report 967. San Francisco Estuary Institute. Richmond, CA.

Technical Report20170967Climate Change, Sea Level Rise

Fong, L.S., E.D. Stein, R.F. Ambrose. 2017. Development of Restoration Performance Curves for Streams in Southern California Using an Integrative Condition Index. Wetlands 37:289-299.

Journal Article20170962Ecohydrology

Howard, M.D.A., R.M. Kudela, K. McLaughlin. 2017. New insights into impacts of anthropogenic nutrients on urban ecosystem processes on the Southern California coastal shelf: Introduction and synthesis. Estuarine, Coastal and Shelf Science 186:163-170.

Journal Article20170964Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Kudela, R.M., A.J. Lucas, K. Hayashi, M.D.A. Howard, K. McLaughlin. 2017. Death from below: Investigation of inhibitory factors in bloom development during a wastewater effluent diversion. Estuarine, Coastal and Shelf Science 186:209-222.

Journal Article20170980Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Bednarsek, N., R.A. Feely, N. Tolimieri, A.J. Hermann, S.A. Siedlecki, G.G. Waldbusser, P. McElhany, S.R. Alin, T. Klinger, B. Moore-Maley, H.O. Portner. 2017. Exposure history determines pteropod vulnerability to ocean acidification along the US West Coast. Scientific Reports 3:4526.

Journal Article20171004Climate Change, Ocean Acidification And Hypoxia

Alonso, M.B., K.A. Maruya, N.G. Dodder, J. Lailson-Brito Jr, A. Azevedo, E. Santos-Neto, J.P.M. Torres, O. Malm, E. Hoh. 2017. Nontargeted Screening of Halogenated Organic Compounds in Bottlenose Dolphins (Tursiops truncatus) from Rio de Janeiro, Brazil. Environmental Science and Technology 51:1176-1185.

Journal Article20170965Emerging Contaminants

Howard, M.D.A., C. Nagoda, R.M. Kudela, K. Hayashi, A. Tatters, D.A. Caron, L. Busse, J.S. Brown, M. Sutula, E.D. Stein. 2017. Microcystin Prevalence throughout Lentic Waterbodies in Coastal Southern California. Toxins 9:231.

Journal Article20170997Climate Change, Eutrophication, Harmful Algal Blooms

Pyne, M.I., D.M. Carlisle, C.P. Konrad, E.D. Stein. 2017. Classification of California streams using combined deductive and inductive approaches: Setting the foundation for analysis of hydrologic alteration. Ecohydrology 10:e1802.

Journal Article20170969Ecohydrology

Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Suhatme, B. Seegers, B.H. Jones, A.A.Y. Lie, R. Terrado, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel, G. Robertson. 2017. Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science 186:223-236.

Journal Article20170982Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

McLaughlin, K., N.P. Nezlin, S.B. Weisberg, A.G. Dickson, J.A. Booth, C.L. Cash, A. Feit, J.R. Gully, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez. 2017. An evaluation of potentiometric pH sensors in coastal monitoring applications. Limnology and Oceanography: Methods 15:679-689.

Journal Article20171009Climate Change, Ocean Acidification And Hypoxia

Mazor, R.D., E.D. Stein. 2017. 2015 Report on the Stormwater Monitoring Coalition Regional Stream Survey. Technical Report 963. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170963Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Mazor, R.D., P.R. Ode, A.C. Rehn, E.D. Stein. 2017. Spatial statistical network models to estimate the spatial representativeness of bioassessment samples. Technical Report 979. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170979Bioassessment, Indices Of Biotic Integrity

Walther, S.M., J.P. Williams, A.M. Latker, D.B. Cadien, D.W. Diehl, K. Wisenbaker, E. Miller, R. Gartman, C. Stransky, K.C. Schiff. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VII. Demersal Fishes and Megabenthic Invertebrates. Technical Report 972. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170972Regional Monitoring, Southern California Bight Regional Monitoring Program

Brooks, B.W., J.M. Lazorchak, M.D.A. Howard, M.V. Johnson, S.L. Morton, D.A.K. Perkins, E.D. Reavie, G.D. Scott, S.A. Smith, J.A. Stevens. 2017. In Some Places, In Some Cases, And At Some Times, Harmful Algal Blooms Are The Greatest Threat To Inland Water Quality. Environmental Toxicology and Chemistry 36:1125-1127.

Journal Article20171003Climate Change, Eutrophication, Harmful Algal Blooms

Zimmer-Faust, A.G., V. Thulsiraj, C. Marambio-Jones, Y. Cao, J.F. Griffith, P.A. Holden, J.A. Jay. 2017. Effect of freshwater sediment characteristics on the persistence of fecal indicator bacteria and genetic markers within a Southern California watershed. Water Research 119:1-11.

Journal Article20170984Microbial Source Tracking, Microbial Water Quality

Steinberg, S.J., S.L. Moore. 2017. San Diego Bay Fish Consumption Study. Technical Report 976. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170976Sediment Quality

Lin, K., W. Lao, Z. Lu, F. Jia, K.A. Maruya, J. Gan. 2017. Measuring freely dissolved DDT and metabolites in seawater using solid-phase microextraction with performance reference compounds. Science of the Total Environment 599-600:364-371.

Journal Article20170985Sediment Quality

Nezlin, N.P., K. McLaughlin, A.T. Booth, C.L. Cash, D.W. Diehl, K. Davis, A. Feit, R. Goericke, J.R. Gully, M.D.A. Howard, S. Johnson, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, L. Terriquez, L.i.b.e. Washburn, S.B. Weisberg. 2017. Spatial and Temporal Patterns of Chlorophyll Concentration in the Southern California Bight. Technical Report 998. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170998Climate Change, Eutrophication, Harmful Algal Blooms

McLaughlin, K., A. Dickson, S.B. Weisberg, K. Coale, V. Elrod, C. Hunter, K.S. Johnson, S. Kram, R. Kudela, T. Martz, K. Negrey, U. Passow, F. Shaughnessy, J.E. Smith, D. Tadesse, L. Washburn, K.R. Weis. 2017. An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science 12:11-18.

Journal Article20170975Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Sutula, M., D. Senn. 2017. Scientific Basis to Assess the Effects of Nutrients on San Francisco Bay Beneficial Uses. Technical Report 864. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170864Eutrophication, Harmful Algal Blooms

Sutula, M., R. Kudela, J.D. Hagy III, L.W. Harding Jr, D. Senn, J.E. Cloern, S. Bricker, G.M. Berg, M. Beck. 2017. Novel analyses of long-term data provide a scientific basis for chlorophyll-a thresholds in San Francisco Bay. Estuarine, Coastal and Shelf Science 197:107-118.

Journal Article20171001Eutrophication, Harmful Algal Blooms

Kudela, R.M., M.D.A. Howard, K. Hayashi, C. Beck. 2017. Evaluation of uptake kinetics during a wastewater diversion into nearshore coastal waters in southern California. Estuarine, Coastal and Shelf Science 186:237-249.

Journal Article20170981Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Cao, Y., M. Sivaganesan, C.A. Kelty, D. Wang, A. Boehm, J.F. Griffith, S.B. Weisberg, O.C. Shanks. 2017. A human fecal contamination score for ranking recreational sites using the HF183/BacR287 quantitative real-time PCR method. Water Research 128:148-156.

Journal Article20171008Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Mazdiyasni, O., A. AghaKouchak, S.J. Davis, S. Madadgar, A. Mehran, E. Ragno, M. Sadegh, A. Sengupta, S. Ghosh, C.T. Dhanya, M. Niknejad. 2017. Increasing probability of mortality during Indian heat waves. Science Advances 3:e1700066.

Journal Article20170990Climate Change

Chen, C., M.O. Gribble, J. Bartroff, S.M. Bay, L. Goldstein. 2017. The Sequential Probability Ratio Test: An efficient alternative to exact binomial testing for Clean Water Act 303(d) evaluation. Journal of Environmental Management 192:89-93.

Journal Article20170968Sediment Quality

Benjamin-Chung, J., B.F. Arnold, T.J. Wade, K.C. Schiff, J.F. Griffith, A.P. Dufour, S.B. Weisberg, J.M. Colford Jr. 2017. Coliphages and gastrointestinal illness in recreational waters: pooled analysis of six coastal beach cohorts. Epidemiology 28:644-652.

Journal Article20170987Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Beck, M., R.D. Mazor, E.D. Stein, R. Maas, D.D. Mello, D. Bram. 2017. Mapping of Non-Perennial and Ephemeral Streams in the Santa Ana Region. Technical Report 1012. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20171012Bioassessment

Stein, E.D., K.B. Lunde, J.S. Brown. 2017. Assessment of the condition of San Francisco Bay Area depressional wetlands. Technical Report 940. Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20170940

Bay, S.M., A.N. Parks, A.R. Melwani, B.K. Greenfield. 2017. Development of a Sediment Quality Assessment Framework for Human Health Effects. Technical Report 1000. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20171000Sediment Quality, Sediment Quality Assessment Frameworks

Martinovic-Weigelt, D., A.C. Mehinto, G.T. Ankley, J.P. Berninger, T.W. Collette, J.M. Davis, N.D. Denslow, E.J. Durhan, E. Eid, D.R. Ekman, K.M. Jensen, M.D. Kahl, C.A. LaLone, Q. Teng, D.L. Villeneuve. 2017. Derivation and Evaluation of Putative Adverse Outcome Pathways for the Effects of Cyclooxygenase Inhibitors on Reproductive Processes in Female Fish. Toxicological Sciences 156:344-61.

Journal Article20170996Bioanalytical Cell Screening Assays, Emerging Contaminants

Bednarsek, N., T. Klinger, C.J. Harvey, S.B. Weisberg, R.M. McCabe, R.A. Feely, J. Newton, N. Tolimieri. 2017. New ocean, new needs: Application of pteropod shell dissolution as a biological indicator for marine resource management. Ecological Indicators 76:240-244.

Journal Article20170966Climate Change, Ocean Acidification And Hypoxia

Phelps, L., J. Adelson, S. Arms, D. Speis. 2017. Progress Assessment and Final Recommendations by the Expert Review Panel for the State of California's Environmental Laboratory Accreditation Program: Year Two Final Report. Technical Report 977. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170977

Arnold, B.F., K.C. Schiff, A. Ercumen, J. Benjamin-Chung, J.A. Steele, J.F. Griffith, S.J. Steinberg, P.D. Smith, C.D. McGee, R. Wilson, C. Nelsen, S.B. Weisberg, J.M. Colford Jr. 2017. Acute Illness Among Surfers After Exposure to Seawater in Dry- and Wet-Weather Conditions. American Journal of Epidemiology 186:866-875.

Journal Article20170986Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Cao, Y., G.L. Andersen, A.A. Boehm, P. Holden, J.A. Jay, J.F. Griffith. 2017. Determination of DNA-based Fecal Marker Aging Characteristics for Use in Quantitative Microbial Source Tracking. Technical Report 978. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170978Microbial Source Tracking, Microbial Water Quality

Tatters, A.O., M.D.A. Howard, C. Nagoda, L. Busse, A.G. Gellene, D.A. Caron. 2017. Multiple Stressors at the Land-Sea Interface: Cyanotoxins at the Land-Sea Interface in the Southern California Bight. Toxins 9:95.

Journal Article20170989Climate Change, Eutrophication, Harmful Algal Blooms

Stein, E.D., R.D. Mazor, A. Sengupta, K. McCune, B. Bledsoe, S. Adams, S. Eberhart, M. Pyne, P. Ode, A. Rehn. 2017. Development of Recommended Flow Targets to Support Biological Integrity Based on Regional Flow-ecology Relationships for Benthic Macroinvertebrates in Southern California Streams. Technical Report 974. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170974Bioassessment, Ecohydrology, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Cao, Y., M.R. Raith, P.D. Smith, J.F. Griffith, S.B. Weisberg, A. Schriewer, A. Sheldon, C. Crompton, G.G. Amenu, J. Gregory, J. Guzman, K.D. Goodwin, L. Othman, M. Manasjan, S. Choi, S. Rapaport, S. Steele, T. Nguyen, X. Yu. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume IX. Shoreline Microbiology. Technical Report 1005. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20171005Microbial Source Tracking, Microbial Water Quality, Regional Monitoring, Southern California Bight Regional Monitoring Program

Cao, Y., M.R. Raith, P.D. Smith, J.F. Griffith, S.B. Weisberg, A. Schriewer, A. Sheldon, C. Crompton, G.G. Amenu, J. Gregory, J. Guzman, K.D. Goodwin, L. Othman, M. Manasjan, S. Choi, S. Rapoport, S. Steele, T. Nguyen, X. Yu. 2017. Regional Assessment of Human Fecal Contamination in Southern California Coastal Drainages. International Journal of Environmental Research and Public Health 14:874.

Journal Article20170999Microbial Source Tracking, Microbial Water Quality, Regional Monitoring, Southern California Bight Regional Monitoring Program

Chiu, M.C., C. Leigh, R.D. Mazor, N. Cid, V. Resh. 2017. Anthropogenic Threats to Intermittent Rivers and Ephemeral Streams. in: T. Datry, N. Bonada, A. Boulton (eds.), Intermittent Rivers and Ephemeral Streams: Ecology and Management pp. 433-454. Academic Press. London, UK.

Book Chapter20170993Bioassessment, Ecohydrology, Indices Of Biotic Integrity

DeFlorio-Barker, S., B.F. Arnold, E.A. Sams, A.P. Dufour, J.M. Colford Jr, S.B. Weisberg, K.C. Schiff, T.J. Wade. 2017. Child environmental exposures to water and sand at the beach: Findings from studies of over 68,000 subjects at 12 beaches. Journal of Exposure Science and Environmental Epidemiology DOI:10.1038/jes.2017.23.

Journal Article20171007Microbial Risk Assessment, Microbial Water Quality

Mazor, R.D., J.S. Brown, E.D. Stein, J.R. Olson, M.D. Robinson, T. Clark. 2017. Assessment of Episodic Streams in the San Diego Region. Technical Report 1011. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20171011Bioassessment

Mehinto, A.C., D.R. VanDervort, W. Lao, G. He, M.S. Denison, S.M. Vliet, D.C. Volz, R.D. Mazor, K.A. Maruya. 2017. High throughput in vitro and in vivo screening of inland waters of Southern California. Environmental Science: Processes and Impacts 19:1142-1149.

Journal Article20170995Bioanalytical Cell Screening Assays, Emerging Contaminants

McLaughlin, K., N.P. Nezlin, M.D.A. Howard, C.D.A. Beck, R.I.M. Kudela, M.J. Mengel, G.L. Robertson. 2017. Rapid nitrification of wastewater ammonium near coastal ocean outfalls, Southern California, USA. Estuarine, Coastal and Shelf Science 186:263-375.

Journal Article20170952Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Bight '13 Contaminant Impact Assessment Planning Committee. 2017. Southern California Bight 2013 Regional Monitoring Program: Volume VIII. Contaminant Impact Assessment Synthesis Report. Technical Report 973. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170973Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Southern California Bight 2013 Regional Monitoring Program Contaminant Impact Assessment Planning Committee. 2017. Southern California Bight 2013 Regional Monitoring Program Contaminant Impact Assessment Synthesis Report Executive Summary. Technical Report 970. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20170970Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

SCCWRP Staff. 2016. SCCWRP 2016 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2016 Annual ReportSouthern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20162016.01

Davis, J.A., J.R.M. Ross, S. Bezalel, L. Sim, A. Bonnema, G. Ichikawa, W.A. Heim, K.C. Schiff, C.A. Eagles-Smith, J.T. Ackerman. 2016. Hg concentrations in fish from coastal waters of California and Western North America. Science of the Total Environment 568:1146-1156.

Journal Article20160947Sediment Quality

Clatterbuck, C.A., R.A. Lewison, N. Dodder, C. Zeeman, K.C. Schiff. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume V. Contaminant Bioaccumulation in Seabird Eggs of the Southern California Bight. Technical Report 944. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160944Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Stein, E.D., A. Sengupta, R.D. Mazor, K. McCune. 2016. Application of Regional Flow-ecology to Inform Management Decision in the San Diego River Watershed. Technical Report 948. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160948Climate Change, Ecohydrology

Brooks, B.W., J.M. Lazorchak, M.D.A. Howard, M.V.V. Johnson, S.L. Morton, D.A.K. Perkins, E.D. Reavie, G.I. Scott, S.A. Smith, J.A. Steevens. 2016. Are Harmful Algal Blooms Becoming the Greatest Inland Water Quality Threat to Public Health and Aquatic Ecosystems. Environmental Toxicology and Chemistry 35:6-13.

Journal Article20160900Climate Change, Eutrophication, Harmful Algal Blooms

Schiff, K.C., J.F. Griffith, J.A. Steele, B. Arnold, A. Ercumen, J. Benjamin-Chung, J.M. Colford Jr, J. Soller, R. Wilson, C. McGee. 2016. The Surfer Health Study: A Three-Year Study Examining Illness Rates Associated with Surfing During Wet Weather. Technical Report 943. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160943Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Sato, K.N., L.A. Levin, K.C. Schiff. 2016. Habitat compression and expansion of sea urchins in response to changing climate conditions on the California continental shelf and slope (1994-2013). Deep-Sea Research II 137:377-389.

Journal Article20160946Climate Change

Nezlin, N.P., J.A.T. Booth, C. Beegan, C.L. Cash, J.R. Gully, A. Latker, M.J. Mengel, G.L. Robertson, A. Steele, S.B. Weisberg. 2016. Assessment of wastewater impact on dissolved oxygen around southern California's submerged ocean outfalls. Regional Studies in Marine Science 7:177-184.

Journal Article20160945Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Maruya, K.A., N.G. Dodder, A. Sengupta, D.J. Smith, J.M. Lyons, A.T. Heil, J.E. Drewes. 2016. Multi-media screening of contaminants of emerging concern (CECs) in coastal urban watersheds in southern California (USA). Environmental Toxicology and Chemistry 35:1986-1994.

Journal Article20160902Emerging Contaminants

Mackintosh, S.A., N.G. Dodder, N.J. Shaul, L.I. Aluwihare, K.A. Maruya, S.J. Chivers, K. Danil, D.W. Weller, E. Hoh. 2016. Newly Identified DDT-Related Compounds Accumulating in Southern California Bottlenose Dolphins. Environmental Science and Technology 50:12129-12137.

Journal Article20160954Emerging Contaminants

Brown, J.S., E.D. Stein, C. Solek, A.E. Fetscher. 2016. Assessment of the Condition of Southern California Depressional Wetlands: Application of Macroinvertebrate, Diatom and Overall Condition Indices for Assessing Southern California Depressional Wetlands. Technical Report 921. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20160921Bioassessment, Indices Of Biotic Integrity

Cao, Y., J.F. Griffith, S.B. Weisberg. 2016. The Next-Generation PCR-Based Quantification Method for Ambient Waters: Digital PCR. in: S.J. Bourlat (ed.), Marine Genomics: Methods and Protocols pp. 113-130. Springer. New York, NY.

Book Chapter20160951Microbial Source Tracking, Microbial Water Quality

Schiff, K.C., P.R. Trowbridge, E.T. Sherwood, P. Tango, R.A. Batiuk. 2016. Regional monitoring programs in the United States: Synthesis of four case studies from Pacific, Atlantic, and Gulf Coasts. Regional Studies in Marine Science 4:A1-A7.

Journal Article20160931Regional Monitoring, Southern California Bight Regional Monitoring Program

Saintilan, N., K. Rogers, C. Toms, E.D. Stein, D. Jacobs. 2016. Intermittent Estuaries: Linking Hydro-geomorphic Context to Climate Change Resilience. Journal of Coastal Research 75:133-137.

Journal Article20160959Climate Change, Ecohydrology, Sea Level Rise

Sutula, M., J. Butcher, C. Boschen, M. Molina. 2016. Application of Watershed Loading and Estuary Water Quality Models to Inform Nutrient Management in the Santa Margarita River Watershed. Technical Report 933. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160933Eutrophication, Harmful Algal Blooms

Moore, S.L., M. Sutula, T.V. Bitner, G. Lattin, K.C. Schiff. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume III. Trash and Marine Debris. Technical Report 928. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160928Regional Monitoring, Southern California Bight Regional Monitoring Program, Trash Pollution

Anderson-Abbs, B., M.D.A. Howard, K. Taberski, K. Worcester. 2016. California Freshwater Harmful Algal Blooms Assessment and Support Strategy. Technical Report 925. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20160925Climate Change, Eutrophication, Harmful Algal Blooms

Graham, E.B., J.E. Knelman, A. Schindlbacher, S. Siciliano, M. Breulmann, A. Yannarell, J.M. Beman, G. Abell, L. Philippot, J. Prosser, A. Foulquier, J.C. Yuste, H.C. Glanville, D.L. Jones, R. Angel, J. Salminen, R.J. Newton, H. Burgmann, L.J. Ingram, U. Hamer, H.M.P. Siljanen, K. Peltoniemi, K. Potthast, L. Baneras, M. Hartmann, S. Banerjee, R. Yu, G. Nogaro, A. Richter, M. Koranda, S.C. Castle, M. Goberna, B. Song, A. Chatterjee, O.C. Nunes, A.R. Lopes, Y. Cao, A. Kaisermann, S. Hallin, M.S. Strickland, J. Garcia-Pausas, J. Barba, H. Kang, K. Isobe, S. Papaspyrou, R. Pastorelli, A. Lagomarsino, E.S. Lindstrom, N. Basiliko, D.R. Nemergut. 2016. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?. Frontiers in Microbiology 7:214.

Journal Article20160915Microbial Water Quality

Crago, J., E.G. Xu, A. Kupsco, F. Jia, A.C. Mehinto, W. Lao, K.A. Maruya, J. Gan, D. Schlenk. 2016. Trophic transfer and effects of DDT in male hornyhead turbot (Pleuronichthys verticalis) from Palos Verdes Superfund site, CA (USA) and comparisons to field monitoring. Environmental Pollution 213:940-948.

Journal Article20160923Sediment Quality

Wu, J., Y. Cao, B. Young, Y. Yuen, S. Jiang, D. Melendez, J.F. Griffith, J.R. Stewart. 2016. Decay of Coliphages in Sewage-Contaminated Freshwater: Uncertainty and Seasonal Effects. Environmental Science and Technology 50:11593-11601.

Journal Article20160949Microbial Source Tracking, Microbial Water Quality

Ferguson, D.M., G.N. Talavera, L.A.R. Hernandez, S.B. Weisberg, R.F. Ambrose, J.A. Jay. 2016. Virulence Genes among Enterococcus faecalis and Enterococcus faecium Isolated from Coastal Beaches and Human and Nonhuman Sources in Southern California and Puerto Rico. Journal of Pathogens 2016:1-7.

Journal Article20160919Microbial Source Tracking, Microbial Water Quality

Ferguson, D.M., S.B. Weisberg, C. Hagedorn, K. De Leon, V. Mofidi, J. Wolfe, M. Zimmerman, J.A. Jay. 2016. Enterococcus growth on eelgrass (Zostera marina); implications for water quality. FEMS Microbiology Ecology 92:1-7.

Journal Article20160929Microbial Risk Assessment, Microbial Water Quality

Aminzadeh, S., M. Armsby, N. Bednarsek, J. Bishop, A. Boehm, C. Braby, F. Chan, R. Dunbar, R. Feely, B. Gaylord, L. Jewett, C. Krembs, K. Kroeker, R. Labiosa, T. Maloney, J. Phillips, B. Rappoli, M. Sakashita, D. Sivas, G. Somero, M. Sutula, D. Thomas, G. Waldbusser, S.B. Weisberg. 2016. Ocean Acidification: Setting Water Quality Goals. Technical Report 961. Stanford University. Stanford, CA.

Technical Report20160961Climate Change, Eutrophication, Ocean Acidification And Hypoxia

Howard, M.D.A., B. Fetscher, C. Nagoda. 2016. The Prevalence of Cyanotoxins in Southern California Waterbodies Based on Screen Assessments and Regional Monitoring Programs. Technical Report 930. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20160930Climate Change, Eutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Lao, W., Y. Hong, D. Tsukada, K.A. Maruya, J. Gan. 2016. A New Film-Based Passive Sampler for Moderately Hydrophobic Organic Compounds. Environmental Science and Technology 50:13470-13476.

Journal Article20160960Emerging Contaminants, Sediment Quality

Vidal-Dorsch, D.E., S.M. Bay, S.L. Moore, B. Layton, A.C. Mehinto, C.D. Vulpe, M. Brown-Augustine, A. Loguinov, H. Poynton, N. Garcia-Reyero, E.J. Perkins, L. Escalon, N.D. Denslow, C.R. Colli-Dula, T. Doan, S. Shukradas, J. Bruno, L. Brown, G. Van Agglen, P. Jackman, M. Bauer. 2016. Ecotoxicogenomics: Microarray interlaboratory comparability. Chemosphere 144:193-200.

Journal Article20160893Sediment Quality

Weisberg, S.B., N. Bednarsek, R.A. Feely, F. Chan, A.B. Boehm, M. Sutula, J.L. Ruesink, B. Hales, J.L. Largier, J.A. Newton. 2016. Water quality criteria for an acidifying ocean: Challenges and opportunities for improvement. Ocean and Coastal Management 126:31-41.

Journal Article20160924Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Cloern, J.E., P.J. Barnard, E. Beller, J.C. Callaway, L. Grenier, E.D. Grosholz, R. Grossinger, K. Hieb, J.T. Hollibaugh, N. Knowles, M. Sutula, S. Veloz, K. Wasson, A. Whipple. 2016. Estuaries: Life on the edge. in: H. Mooney, E. Zavaleta (eds.), Ecosystems of California pp. 133-137. University of California Press. Berkeley, CA.

Book Chapter20161024Ecohydrology

Sutula, M., D.J. Gillett, A. Jones. 2016. Status of Eutrophication in San Elijo Lagoon and its Relevance for Restoration. Technical Report 938. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20160938Climate Change, Eutrophication, Harmful Algal Blooms

Haugland, R.A., S. Siefring, M. Varma, K.H. Oshima, M. Sivaganesan, Y. Cao, M.R. Raith, J.F. Griffith, S.B. Weisberg, R.T. Noble, A.D. Blackwood, J. Kinzelman, T. Anan'eva, R.N. Bushon, E.A. Stelzer, V.J. Harwood, K.V. Gordon, C. Sinigalliano. 2016. Multi-laboratory survey of qPCR enterococci analysis method performance in U.S. coastal and inland surface waters. Journal of Microbiological Methods 123:114-125.

Journal Article20160917Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Arnold, B.F., T.J. Wade, J. Benjamin-Chung, K.C. Schiff, J.F. Griffith, A.P. Dufour, S.B. Weisberg, J.M. Colford Jr. 2016. Acute Gastroenteritis and Recreational Water: Highest Burden Among Young US Children. American Journal of Public Health 9:1690-1697.

Journal Article20160937Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Griffith, J.F., S.B. Weisberg, B.F. Arnold, Y. Cao, K.C. Schiff, J.M. Colford Jr. 2016. Epidemiologic evaluation of multiple alternate microbial water quality monitoring indicators at three California beaches. Water Research 94:371-381.

Journal Article20160918Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Wang, D., K.M. Yamahara, Y. Cao, A.B. Boehm. 2016. Absolute Quantification of Enterococcal 23S rRNA Gene Using Digital PCR. Environmental Science and Technology 50:399-408.

Journal Article20160920Microbial Source Tracking, Microbial Water Quality

Maraccini, P.A., M.C.M. Mattioli, L.M. Sassoubre, Y. Cao, J.F. Griffith, J.S. Ervin, L.C. Van De Werfhorst, A.B. Boehm. 2016. Solar Inactivation of Enterococci and Escherichia coli in Natural Waters: Effects of Water Absorbance and Depth. Environmental Science and Technology 50:5068-5076.

Journal Article20160950Microbial Source Tracking, Microbial Water Quality

Peng, J., Y. Cao, M.A. Rippy, A.R.M.N. Afrooz, S.B. Grant. 2016. Indicator and Pathogen Removal by Low Impact Development Best Management Practices. Water 8:600.

Journal Article20160958Microbial Water Quality, Runoff Water Quality, Stormwater BMPs

Dodder, N., K.C. Schiff, A. Latker, C.L. Tang. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume IV. Sediment Chemistry. Technical Report 922. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160922Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Boehm, A., F. Chan, J. Barth, E. Chornesky, A. Dickson, R. Feely, B. Hales, T. Hill, G. Hofmann, D. Ianson, T. Klinger, J. Largier, J. Newton, T. Pedersen, G. Somero, M. Sutula, W. Wakefield, G. Waldbusser, S.B. Weisberg, E. Whiteman. 2016. The West Coast Ocean Acidification and Hypoxia Science Panel: Major Findings, Recommendations, and Actions. Technical Report 926. California Ocean Science Trust. Oakland, CA.

Technical Report20160926Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Schiff, K.C., D.J. Greenstein. 2016. Stormwater Monitoring Coalition Toxicity Testing Laboratory Guidance Document. Technical Report 956. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160956Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition

Schiff, K.C., L.L. Tiefenthaler, S.M. Bay, D.J. Greenstein. 2016. Effects of Rainfall Intensity and Duration on the First Flush from Parking Lots. Water 8:320.

Journal Article20160941Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Scott, G.I., D.E. Porter, R.S. Norman, C.H. Scott, M.I. Uyaguari-Diaz, K.A. Maruya, S.B. Weisberg, M.H. Fulton, E.F. Wirth, J. Moore, P.L. Pennington, D. Schlenk, G.P. Cobb, N.D. Denslow. 2016. Antibiotics as CECs: An Overview of the Hazards Posed by Antibiotics and Antibiotic Resistance. Frontiers in Marine Science 3:1-15.

Journal Article20160939Emerging Contaminants, Microbial Risk Assessment, Microbial Water Quality

Bay, S.M., D.J. Greenstein, A.N. Parks, C.Q.T. Zeeman. 2016. Assessment of Bioaccumulation in San Diego Bay. Technical Report 953. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160953Sediment Quality, Sediment Quality Assessment Frameworks

Ode, P.R., A.E. Fetscher, L.B. Busse. 2016. Standard Operating Procedures (SOP) for the Collection of Field Data for Bioassessments of California Wadeable Streams: Benthic Macroinvertebrates, Algae, and Physical Habitat. Technical Report 835. State Water Resources Control Board Surface Water Ambient Monitoring Program. Sacramento, CA.

Technical Report20160835Bioassessment, Indices Of Biotic Integrity

Cao, Y., M.R. Raith, J.F. Griffith. 2016. A Duplex Digital PCR Assay for Simultaneous Quantification of the Enterococcus spp. and the Human Fecal-associated HF183 Marker in Waters. Journal of Visualized Experiments 109:e53611.

Journal Article20160916Microbial Source Tracking, Microbial Water Quality

Tiefenthaler, L.L., M. Sutula, J.F. Griffith, M.R. Raith. 2016. Microbiological Water Quality at Reference Beaches and an Adjoining Estuary in Southern California during a Prolonged Drought. Technical Report 936. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160936Microbial Risk Assessment, Microbial Water Quality

Denslow, N.D., K.A. Maruya, F.D.L. Leusch. 2016. Bioanalytical Approaches in Assessing Transformation Products. in: J.E. Drewes, T. Letzel (eds.), Assessing Transformation Products of Chemicals by Non-Target and Suspect Screening - Strategies and Workflows, Volume 2 pp. 73-87. American Chemical Society. Washington, DC.

Book Chapter20160957Bioanalytical Cell Screening Assays, Emerging Contaminants

Brooks, R.P., D. Faber-Langendoen, G. Serenbetz, J. Rocchio, E.D. Stein, K. Walz. 2016. Towards Creating a National Reference Wetlands Registry. National Wetlands Newsletter 38:7-11.

Journal Article20160927

Schiff, K.C., J.S. Brown, S. Trump, D. Hardin. 2016. Near-Coastal Water Quality at Reference Sites Following Storm Events. Marine Pollution Bulletin 103:294-300.

Journal Article20160914Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Mehinto, A.C., B.S. Jayasinghe, D.R. Vandervort, N.D. Denslow, K.A. Maruya. 2016. Screening for Endocrine Activity in Water Using Commercially-available In Vitro Transactivation Bioassays. Journal of Visualized Experiments 118:e54725.

Journal Article20160955Bioanalytical Cell Screening Assays, Emerging Contaminants

Pondella II, D.J., K.C. Schiff, R.A. Schaffner, A. Zellmer, J. Coates. 2016. Southern California Bight 2013 Regional Monitoring Program: Volume II. Rocky Reefs. Technical Report 932. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20160932Regional Monitoring, Southern California Bight Regional Monitoring Program

Ode, P.R., A.C. Rehn, R.D. Mazor, K.C. Schiff, E.D. Stein, J.T. May, L.R. Brown, D.B. Herbst, D.J. Gillett, K. Lunde, C.P. Hawkins. 2016. Evaluating the adequacy of a reference-site pool for ecological assessments in environmentally complex regions. Freshwater Science 35:237-248.

Journal Article20160886Bioassessment, Indices Of Biotic Integrity

Mazor, R.D., A.C. Rehn, P.R. Ode, M. Engeln, K.C. Schiff, E.D. Stein, D.J. Gillett, D.B. Herbst, C.P. Hawkins. 2016. Bioassessment in complex environments: designing an index for consistent meaning in different settings. Freshwater Science 35:249-271.

Journal Article20160889Bioassessment, Indices Of Biotic Integrity

Alonso, M.B., J. Lailson-Brito, A. Azevedo, E. Santos-Neto, J.P.M. Torres, O. Malm, E. Hoh, N. Dodder, K.A. Maruya. 2015. A Comprehensive Non-Targeted Screening of Halogenated Organic Compounds in Dolphins from Brazil. Organohalogen Compounds 77:337-340.

Journal Article20150903Emerging Contaminants

Dodder, N.G., A.C. Mehinto, K.A. Maruya. 2015. Monitoring of Constituents of Emerging Concern (CECs) in California's Aquatic Ecosystems - Pilot Study Design and QA/QC Guidance. Technical Report 854. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150854Bioanalytical Cell Screening Assays, Emerging Contaminants

Johnston, K., I. Medel, S. Anderson, E.D. Stein, C. Whitcraft, J. Crooks. 2015. Estuarine Wetland Monitoring Manual: Application and Assessment of USEPA Three-Tiered Monitoring Strategy to Southern California Coastal Wetlands. Technical Report 880. The Bay Foundation. Los Angeles, CA.

Technical Report20150880

Bay, S.M., R. Hoenicke, K.A. Maruya. 2015. Water Resources: Contaminants of Emerging Concern. Urban Coast 5:35-40.

Journal Article20150907Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Stormwater Monitoring Coalition

SCCWRP Staff. 2015. SCCWRP 2015 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2015 Annual ReportSouthern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20152015.01

Mazor, R.D. 2015. Bioassessment of Perennial Streams in Southern California: A Report on the First Five Years of the Stormwater Monitoring Coalition's Regional Stream Survey. Technical Report 844. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150844Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Mazor, R.D. 2015. Bioassessment Survey of the Stormwater Monitoring Coalition: Workplan for Years 2015 through 2019 Version 1.0. Technical Report 849. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150849Bioassessment, Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Pondella II, D.J., J.P. Williams, J. Claisse, R.A. Schaffner, K. Ritter, K.C. Schiff. 2015. The Physical Characteristics of Nearshore Rocky Reefs in The Southern California Bight. Bulletin of the Southern California Academy of Sciences 114:105-122.

Journal Article20150942Regional Monitoring, Southern California Bight Regional Monitoring Program

Gillett, D.J., S.B. Weisberg, T. Grayson, A. Hamilton, V. Hansen, E.W. Leppo, M.C. Pelletier, A. Borja, D. Cadien, D. Dauer, R. Diaz, M. Dutch, J.L. Hyland, M. Kellogg, P.F. Larsen, J.S. Levinton, R. Llanso, L.L. Lovell, P.A. Montagna, D. Pasko, C.A. Phillips, C. Rakocinski, J.A. Ranasinghe, D.M. Sanger, H. Teixeira, R.F. Van Dolah, R.G. Velarde, K.I. Welch. 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators 50:99-107.

Journal Article20150839Bioassessment, Indices Of Biotic Integrity

Maruya, K.A., W. Lao, D. Tsukada, D.W. Diehl. 2015. A passive sampler based on solid phase microextraction (SPME) for sediment-associated organic pollutants: Comparing freely-dissolved concentration with bioaccumulation. Chemosphere 137:192-197.

Journal Article20150879Sediment Quality

May, J.T., L.R. Brown, A.C. Rehn, I.R. Waite, P.R. Ode, R.D. Mazor, K.C. Schiff. 2015. Correspondence of biological condition models of California streams at statewide and regional scales. Environmental Monitoring and Assessment 187:4086.

Journal Article20150845Bioassessment, Indices Of Biotic Integrity

Maruya, K.A., N.G. Dodder, A.C. Mehinto, N.D. Denslow, D. Schlenk, S.A. Snyder, S.B. Weisberg. 2015. A Tiered, Integrated Biological and Chemical Monitoring Framework for Contaminants of Emerging Concern in Aquatic Ecosystems. Integrated Environmental Assessment and Management 12:540-547.

Journal Article20150896Bioanalytical Cell Screening Assays, Emerging Contaminants

Love, M.S., J.K. Passarelli, C. Okamoto, D.W. Diehl. 2015. The Bigeye Scad, Selar crumenophthalmus (Bloch, 1793) (Family Carangidae), New to the California Marine Fauna, with a List to and Keys for All California Carangids. Bulletin of the Southern California Academy of Sciences 114:141-148.

Journal Article20150901

Cox, H., E.D. Stein, L. Protopapadakis, M. Dojiri. 2015. Water Resources: Water Supply and Use from a Water Quality Perspective. Urban Coast 5:3-10.

Journal Article20150904

Magrann, T., M.D.A. Howard, M. Sutula, D.S. Boskovic, W.K. Hayes, S.G. Dunbar. 2015. Screening Assessment of Cyanobacteria and Cyanotoxins in Southern California Lentic Habitats. Macrothink Institute Environmental Management and Sustainable Development 4:91-111.

Journal Article20150891Climate Change, Eutrophication, Harmful Algal Blooms

Stein, E.D. 2015. Habitat Highlights: Regional Stream Monitoring in Southern California. Urban Coast 5:128-129.

Journal Article20150911Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Millow, C.J., S.A. Mackintos, R.L. Lewison, N.G. Dodder, E. Hoh. 2015. Identifying Bioaccumulative Halogenated Organic Compounds Using a Nontargeted Analytical Approach: Seabirds as Sentinels. PLoS ONE 10:e0127205.

Journal Article20150876Emerging Contaminants

McLaughlin, K., S.B. Weisberg, A.G. Dickson, G.E. Hofmann, J.A. Newton, D. Aseltine-Neilson, A. Barton, S. Cudd, R.A. Feely, I.W. Jefferds, E.B. Jewett, T. King, C.J. Langdon, S. McAfee, D. Pleschner-Steele, B. Steele. 2015. Core principles of the California Current Acidification Network: Linking chemistry, physics, and ecological effects. Oceanography 28:160-169.

Journal Article20150866Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Shaul, N.J., N.G. Dodder, L.I. Aluwihare, S.A. Mackintosh, K.A. Maruya, S.J. Chivers, K. Danil, D.W. Weller, E. Hoh. 2015. Nontargeted Biomonitoring of Halogenated Organic Compounds in Two Ecotypes of Bottlenose Dolphins (Tursiops truncatus) from the Southern California Bight. Environmental Science and Technology 49:1329-1338.

Journal Article20150847Emerging Contaminants

Compton Renick, V., K. Weinersmith, D.E. Vidal-Dorsch, T.W. Anderson. 2015. Effects of a pesticide and a parasite on neurological, endocrine, and behavioral responses of an estuarine fish. Aquatic Toxicology 170:335-343.

Journal Article20150894Emerging Contaminants

Dodder, N., K.C. Schiff. 2015. Areas of Special Biological Significance: Northern California Bioaccumulation Monitoring. Technical Report 857. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150857Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Feldman, D.L., A. Sengupta, L. Stuvick, E.D. Stein, V. Pettigrove, M. Arora. 2015. Governance issues in developing and implementing offsets for water management benefits: Can preliminary evaluation guide implementation effectiveness?. WIREs Water 2:121-130.

Journal Article20150843Runoff Water Quality, Stormwater BMPs

Cooley, S.R., E.B. Jewett, J. Reichert, L. Robbins, G. Shrestha, D. Wieczorek, S.B. Weisberg. 2015. Getting ocean acidification on decision makers' to-do lists: Dissecting the process through case studies. Oceanography 28:198-211.

Journal Article20150868Climate Change, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Martz, T., K. McLaughlin, S.B. Weisberg. 2015. Best Practices for autonomous measurement of seawater pH with the Honeywell Durafet pH sensor. Technical Report 861. California Current Acidification Network. Santa Barbara, CA.

Technical Report20150861Climate Change, Ocean Acidification And Hypoxia

Fetscher, A.E., E.D. Stein, M.D.A. Howard. 2015. Looking Ahead: Preliminary Examination of Stream Cyanotoxins in Santa Monica Bay and California Watersheds. Urban Coast 5:198-200.

Journal Article20150913Climate Change, Eutrophication, Harmful Algal Blooms

Ambrose, R.F., J.H. Dorsey, K. Johnston, E.D. Stein. 2015. Habitat Conditions: Coastal Wetlands. Urban Coast 5:59-68.

Journal Article20150910

Dagit, R., F. Federico, L. Kats, E.D. Stein. 2015. Habitat Conditions: Freshwater Aquatic and Riparian Habitats. Urban Coast 5:48-58.

Journal Article20150908Bioassessment

Murray, S.N., S.B. Weisberg, P.T. Raimondi, R.F. Ambrose, C.A. Bell, C.A. Blanchette, J.L. Burnaford, M.N. Dethier, J.M. Engle, M.S. Foster, C.M. Miner, K.J. Nielsen, J.S. Pearse, D.V. Richards, J.R. Smith. 2015. Evaluating ecological states of rocky intertidal communities: A Best Professional Judgment exercise. Ecological Indicators 60:802-814.

Journal Article20150881

Schaffner, R.A., S.J. Steinberg, K.C. Schiff. 2015. A GIS Tool to Compute a Pollutant Exposure Index for the Southern California Bight. in: D.J. Wright (ed.), Earth Solutions, Ocean Solutions pp. 109-133. Esri Press. Redlands, CA.

Book Chapter20150874Regional Monitoring, Southern California Bight Regional Monitoring Program

Boehm, A.B., M.Z. Jacobson, M.J. O'Donnell, M. Sutula, W.W. Wakefield, S.B. Weisberg, E. Whiteman. 2015. Ocean acidification science needs for natural resource managers of the North American west coast. Oceanography 28:170-181.

Journal Article20150867Climate Change, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Greenfield, B.K., A.R. Melwani, S.M. Bay. 2015. A tiered assessment framework to evaluate human health risk of contaminated sediment. Integrated Environmental Assessment and Management 11:459-473.

Journal Article20150842Sediment Quality, Sediment Quality Assessment Frameworks

Bay, S.M., L. Wiborg, D.J. Greenstein, N. Haring, C. Pottios, C. Stransky, K.C. Schiff. 2015. Southern California Bight 2013 Regional Monitoring Program. Volume I - Sediment Toxicity Report. Technical Report 899. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150899Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Raimondi, P.T., M. George, M. Redfield, S. Worden, R. Williams, N. Fletcher, L. Anderson, D. Lohse, R. Gaddam. 2015. Characterization of the rocky intertidal ecological communities associated with Northern California Areas of Special Biological Significance. Technical Report 855. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150855Regional Monitoring

Judd, N., Y. Lowney, P. Anderson, S. Baird, S.M. Bay, J. Breidt, M. Buonanduci, Z. Dong, D. Essig, M.R. Garry, R.C. Jim, G. Kirkwood, S.L. Moore, C. Niemi, R. O'Rourke, B. Ruffle, L.A. Schaider, D.E. Vidal-Dorsch. 2015. Fish Consumption as a Driver of Risk-Management Decisions and Human Health-Based Water Quality Criteria. Environmental Toxicology and Chemistry 34:2427-2436.

Journal Article20150892Sediment Quality, Sediment Quality Assessment Frameworks

Bay, S.M. 2015. Water Resources: Toxics TMDLs. Urban Coast 5:22-28.

Journal Article20150905Sediment Quality

Fetscher, A.E., M.D.A. Howard, R. Stancheva, R.M. Kudela, E.D. Stein, M. Sutula, L.B. Busse, R.G. Sheath. 2015. Wadeable streams as widespread sources of benthic cyanotoxins in California, USA. Harmful Algae 49:105-116.

Journal Article20150888Climate Change, Eutrophication, Harmful Algal Blooms

Schiff, K.C., D.J. Greenstein, N. Dodder, D.J. Gillett. 2015. Southern California Bight regional monitoring. Regional Studies in Marine Science 4:34-46.

Journal Article20150890Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Seegers, B.N., J.M. Birch, R. Marin III, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography 60:754-764.

Journal Article20150897Climate Change, Eutrophication, Harmful Algal Blooms

Rehn, A.C., R.D. Mazor, P.R. Ode. 2015. The California Stream Condition Index (CSCI): A New Statewide Biological Scoring Tool for Assessing the Health of Freshwater Streams. Technical Report 883. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150883Bioassessment, Indices Of Biotic Integrity

Stein, E.D., P. Pendleton, K. O'Connor, C. Endris, J. Adalaars, M. Salomon, K. Cayce, A. Jong. 2015. Demonstrating the California Wetland Status and Trends Program: A Probabilistic Approach for Estimating Statewide Aquatic Resource Extent, Distribution and Change over Time. Technical Report 859. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150859

Boyer, K., M. Sutula. 2015. Factors Controlling Submersed and Floating Macrophytes in the Sacramento-San Joaquin Delta. Technical Report 870. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150870Eutrophication, Harmful Algal Blooms

Mehinto, A.C., A. Jia, S.A. Snyder, B. Sumith Jayasinghe, N.D. Denslow, J. Crago, D. Schlenk, C. Menzie, S.D. Westerheide, F.D.L. Leusch, K.A. Maruya. 2015. Interlaboratory comparison of in vitro bioassays for screening of endocrine disrupting chemicals in recycled water. Water Research 83:303-309.

Journal Article20150873Bioanalytical Cell Screening Assays, Emerging Contaminants

Berg, M., M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria With Special Emphasis on the Sacramento-San Joaquin Delta. Technical Report 869. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150869Eutrophication, Harmful Algal Blooms

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California. Technical Report 750. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150750Bioassessment

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix A). Technical Report 750.A. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150750.ABioassessment

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix B). Technical Report 750.B. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150750.BBioassessment

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix C). Technical Report 750.C. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150750.CBioassessment

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams. Technical Report 862. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150862Microbial Source Tracking, Microbial Water Quality

Schiff, K.C., D.J. Gillett, A. Rehn, M. Paul. 2015. Causal Assessment Evaluation and Guidance for California (Appendix D). Technical Report 750.D. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150750.DBioassessment

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix A). Technical Report 862.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150862.AMicrobial Source Tracking, Microbial Water Quality

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix B). Technical Report 862.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150862.BMicrobial Source Tracking, Microbial Water Quality

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix C). Technical Report 862.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150862.CMicrobial Source Tracking, Microbial Water Quality

Tiefenthaler, L.L., M. Sutula, Y. Cao, J.F. Griffith, M.R. Raith, C. Beck, R. Christoph, J. Shrake. 2015. Wet and Dry Weather Natural Background Concentrations of Fecal Indicator Bacteria in San Diego, Orange, and Ventura County, California Streams (Appendix D). Technical Report 862.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20150862.DMicrobial Source Tracking, Microbial Water Quality

Fetscher, A.E., K. Lunde, E.D. Stein, J.S. Brown. 2015. Standard Operating Procedures (SOP) for Collection of Macroinvertebrates, Benthic Algae, and Associated Physical Habitat Data in California Depressional Wetlands. Technical Report 832. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150832Bioassessment, Indices Of Biotic Integrity

Barton, A., G.G. Waldbusser, R.A. Feely, S.B. Weisberg, J.A. Newton, B. Hales, S. Cudd, B. Eudeline, C.J. Langdon, I. Jefferds, T. King, A. Suhrbier, K. McLaughlin. 2015. Impacts of coastal acidification on the Pacific Northwest shellfish industry and adaptation strategies implemented in response. Oceanography 28:146-159.

Journal Article20150865Climate Change, Ocean Acidification And Hypoxia

Stein, E.D., L.G. Lackey, J.S. Brown. 2015. How accurate are probability-based estimates of wetland extent? Results of a California validation study. Wetlands Ecology and Management 24:347-356.

Journal Article20150882

Schiff, K.C., J.S. Brown. 2015. North Coast Areas of Special Biological Significance Regional Monitoring Program: First Year Results. Technical Report 856. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150856Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Von Bitner, T., E.D. Stein, L. Protopapadakis, K. Thorsen. 2015. Water Resources: Trash and Debris. Urban Coast 5:29-34.

Journal Article20150906Regional Monitoring, Southern California Bight Regional Monitoring Program, Southern California Stormwater Monitoring Coalition, Trash Pollution

Schiff, K.C., J.S. Brown. 2015. Proposition 84 Grant Evaluation Report: Assessing Pollutant Reductions to Areas of Biological Significance. Technical Report 858. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150858Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Schiff, K.C., J.S. Brown. 2015. South Coast Areas of Special Biological Significance Regional Monitoring Program Year 2 Results. Technical Report 852. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150852Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Azimi-Gaylon, S., S. Fong, P. Goodwin, T. Hale, G. Isaac, A. Osti, F. Shilling, T. Slawecki, S.J. Steinberg, M. Tompkins, L. Videmsky. 2015. Enhancing the Vision for Managing California's Environmental Information. Technical Report 884. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150884Regional Monitoring

Phelps, L., J. Adelson, S. Arms, M. Miller, D. Speis. 2015. Findings and Recommendations by the Expert Review Panel for the State of California's Environmental Laboratory Accreditation Program Year One Final Report. Technical Report 887. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150887

Schiff, K.C., B. Luk, D. Gregorio. 2015. Impact of Stormwater Discharges on Water Quality in Coastal Marine Protected Areas. Water Environment Research 87:772-782.

Journal Article20150885Runoff Water Quality, Stormwater BMPs

Hallenbeck, T., T. Welch, S.J. Steinberg, A. Lanier. 2015. Extending Esri Geoportal Server to Meet the Needs of the West Coast Ocean Data Network and Inform Regional Ocean Management. in: D.J. Wright (ed.), Earth Solutions, Ocean Solutions pp. 171-184. Esri Press. Redlands, CA.

Book Chapter20150875Regional Monitoring

Layton, B.A., M.R. Raith, J.F. Griffith. 2015. Use of dye tracers and qPCR to identify human fecal contamination at Doheny State Beach, Dana Point, CA. Technical Report 860. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150860Microbial Source Tracking, Microbial Water Quality

Griffith, J.F. 2015. Looking Ahead: New Development in Beach Water Quality Monitoring and Bacterial Source Identification. Urban Coast 5:180-184.

Journal Article20150912Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Cao, Y., M.R. Raith, J.F. Griffith. 2015. Droplet digital PCR for simultaneous quantification of general and human-associated fecal indicators for water quality assessment. Water Research 70:337-349.

Journal Article20150841Microbial Source Tracking, Microbial Water Quality

Bay, S.M., M. Dojiri, J. Gully. 2015. Habitat Conditions: Soft-Bottom Benthos. Urban Coast 5:108-115.

Journal Article20150909Bioassessment, Indices Of Biotic Integrity, Sediment Quality

Gibson, J.F., E.D. Stein, D.J. Baird, C.M. Finlayson, X. Zhang, M. Hajibabaei. 2015. Wetland Ecogenomics - The Next Generation of Wetland Biodiversity and Functional Assessment. Wetland Science and Practice 32:27-32.

Journal Article20150851Bioassessment, DNA Barcoding

Steinberg, S.J., M.M. Hanken. 2015. San Diego Integrated Regional Water Management Data Management System Basic Design Recommendations. Technical Report 878. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150878

Schiff, K.C., J.S. Brown, S. Trump, D. Hardin. 2015. Near-Coastal Water Quality at Reference Sites Following Storm Events. Technical Report 853. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20150853Runoff Water Quality, Stormwater BMPs

Joyce, A.S., M.S. Pirogovsky, R.G. Adams, W. Lao, D. Tsukada, C.L. Cash, J.F. Hawa, K.A. Maruya. 2015. Using performance reference compound-corrected polyethylene passive samplers and caged bivalves to measure hydrophobic contaminants of concern in urban coastal seawaters. Chemosphere 127:10-17.

Journal Article20150848Emerging Contaminants

Kudela, R.M., A. Bickel, M.L. Carter, M.D.A. Howard, L. Rosenfeld. 2015. The Monitoring of Harmful Algal Blooms through Ocean Observing: The Development of the California Harmful Algal Bloom Monitoring and Alert Program. in: Y. Liu, H. Kerkering, R.H. Weisbert (eds.), Coastal Ocean Observing Systems pp. 58-75. Academic Press. Boston, MA.

Book Chapter20150898Climate Change, Eutrophication, Harmful Algal Blooms

SCCWRP Staff. 2014. SCCWRP 2014 Annual Report. in: S.B. Weisberg, S. Martindale (eds.), Southern California Coastal Water Research Project 2014 Annual ReportSouthern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20142014.01

Booth, J.A.T., C.B. Woodson, M. Sutula, F. Micheli, S.B. Weisberg, S.J. Bograd, A. Steele, J. Schoen, L.B. Crowder. 2014. Patterns and potential drivers of declining oxygen content along the Southern California coast. Limnology and Oceanography 59:1127-1138.

Journal Article20140827Climate Change, Eutrophication, Ocean Acidification And Hypoxia

White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2014. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment. Freshwater Science 33:338-348.

Journal Article20140808Bioassessment, DNA Barcoding

Stein, E.D., K. Cayce, M. Salomon, D.L. Bram, D. De Mello, R. Grossinger, S. Dark. 2014. Wetlands of the Southern California Coast: Historical Extent and Change Over Time. Technical Report 826. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140826

Sutula, M., M.D.A. Howard, L. Crowder, S. McAfee. 2014. Modeling in Support of Management of Coastal Hypoxia and Acidification in the California Current Ecosystem. Technical Report 829. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140829Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

Mehinto, A.C., M.S. Prucha, R.C. Colli-Dula, K.J. Kroll, C.M. Lavelle, D.S. Barber, C.D. Vulpe, N.D. Denslow. 2014. Gene networks and toxicity pathways induced by acute cadmium exposure in adult largemouth bass (Micropterus salmoides). Aquatic Toxicology 152:186-194.

Journal Article20140821Sediment Quality

Fetscher, E., M. Sutula, A. Sengupta, N. Detenbeck. 2014. Linking Nutrients to Alterations in Aquatic Life in California Wadeable Streams. Technical Report 834. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140834Bioassessment, Eutrophication, Harmful Algal Blooms

Beller, E., S. Baumgarten, R. Grossinger, T. Longcore, E.D. Stein, S. Dark, S. Dusterhoff. 2014. Northern San Diego County Lagoons: Historical Ecology Investigation. Technical Report 831. San Francisco Estuary Institute. Richmond, CA.

Technical Report20140831

Dodder, N., W. Lao, D. Tsukada, D.W. Diehl, K.C. Schiff. 2014. Areas of Special Biological Significance: Bioaccumulation Monitoring. Technical Report 816. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20140816Regional Monitoring, Sediment Quality

Lackey, L.G., E.D. Stein. 2014. Evaluating Alternative Temporal Survey Designs For Monitoring Wetland Area And Detecting Changes Over Time In California. Journal of the American Water Resources Association 51:388-399.

Journal Article20140836

Stein, E.D., J.S. Brown, K. Cayce, M. Klatt, M. Salomon, P. Pendleton, S. Dark, K. O'Connor, C. Endris. 2014. California Aquatic Resources Status and Trends Program: Mapping Methodology. Technical Report 833. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140833

Rogowski, P., E. Terrill, L. Hazard, K.C. Schiff. 2014. Assessing Areas of Special Biological Significance Exposure to Stormwater Plumes Using a Surface Transport Model. Technical Report 817. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20140817Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Lackey, L.G., E.D. Stein. 2014. Selecting the optimum plot size for a California design-based stream and wetland mapping program. Environmental Monitoring and Assessment 186:2599-2608.

Journal Article20140800

Mazor, R.D., E.D. Stein, P.R. Ode, K.C. Schiff. 2014. Integrating intermittent streams into watershed assessments: applicability of an index of biotic integrity. Freshwater Science 33:459-474.

Journal Article20140813Bioassessment, Indices Of Biotic Integrity

Escher, B.I., M. Allinson, R. Altenburger, P.A. Bain, P. Balaguer, W. Busch, J. Crago, N.D. Denslow, E. Dopp, K. Hilscherova, A.R. Humpage, A. Kumar, M. Grimaldi, B.S. Jayasinghe, B. Jarosova, A. Jia, S. Makarov, K.A. Maruya, A. Medvedev, A.C. Mehinto, J.E. Mendez, A. Poulsen, E. Prochazka, J. Richard, A. Schifferli, D. Schlenk, S. Scholz, F. Shiraishi, S. Snyder, G. Su, J.Y.M. Tang, B. van der Burg, S.C. van der Linden, I. Werner, S.D. Westerheide, C.K.C. Wong, M. Yang, B.H.Y. Yeung, X. Zhang, F.D.L. Leusch. 2014. Benchmarking organic micropollutants in wastewater, recycled water and drinking water with in vitro bioassays. Environmental Science and Technology 48:1940-1956.

Journal Article20140805Bioanalytical Cell Screening Assays, Emerging Contaminants

Christiansen, H.E., A.C. Mehinto, F. Yuc, R.W. Perry, N.D. Denslow, A.G. Maule, M.G. Mesa. 2014. Correlation of gene expression and contaminant concentrations in wild largescale suckers: A field-based study. Science of the Total Environment 484:379-389.

Journal Article20140846Emerging Contaminants

Sutula, M., L. Green, G. Cicchetti, N. Detenbeck, P. Fong. 2014. Thresholds of Adverse Effects of Macroalgal Abundance and Sediment Organic Matter on Benthic Habitat Quality in Estuarine Intertidal Flats. Estuaries and Coasts 37:1532-1548.

Journal Article20140895Eutrophication, Harmful Algal Blooms

Vidal- Dorsch, D.E., S.M. Bay, D.J. Greenstein, M.E. Baker, G. Hardiman, J.A. Reyes, K.M. Kelley, D. Schlenk. 2014. Biological responses of marine flatfish exposed to municipal wastewater effluent. Environmental Toxicology and Chemistry 33:583-591.

Journal Article20140822Emerging Contaminants

Riedel, T.E., A.G. Zimmer-Faust, V. Thulsiraj, T. Madi, K.T. Hanley, D.L. Ebentier, M. Byappanahalli, B. Layton, M.R. Raith, A.B. Boehm, J.F. Griffith, P.A. Holden, O.C. Shanks, S.B. Weisberg, J.A. Jay. 2014. Detection limits and cost comparisons of human-and gull-associated conventional and quantitative PCR assays in artificial and environmental waters. Journal of Environmental Management 136:112-120.

Journal Article20140814Microbial Source Tracking, Microbial Water Quality

Howard, M.D.A., M. Sutula, D.A. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin, A. Sengupta. 2014. Anthropogenic nutrient sources rival natural sources on small scales in the coastal waters of the Southern California Bight. Limnology and Oceanography 59:285-297.

Journal Article20140810Climate Change, Eutrophication, Harmful Algal Blooms, Ocean Acidification And Hypoxia

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, L. Stratton. 2014. A regional survey of the extent and magnitude of eutrophication in Mediterranean estuaries of Southern California, USA. Estuaries and Coasts 37:259-278.

Journal Article20140794Eutrophication

Yau, V.M., K.C. Schiff, B.F. Arnold, J.F. Griffith, J.S. Gruber, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, A.B. Boehm, S.B. Weisberg, J.M. Colford Jr. 2014. Effect of submarine groundwater discharge on bacterial indicators and swimmer health at Avalon Beach, CA, USA. Water Research 59:23-36.

Journal Article20140825Microbial Risk Assessment, Microbial Water Quality

Bailey, H., C. Curran, S. Poucher, M. Sutula. 2014. Science Supporting Dissolved Oxygen Objectives for Suisun Marsh. Technical Report 830. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140830Climate Change, Eutrophication, Harmful Algal Blooms

McLaughlin, K., M. Sutula. 2014. Estimating Wet and Dry Deposition of Nitrogen to Southern California Streams. Technical Report 837. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140837Eutrophication, Harmful Algal Blooms

Green, L., P. Fong, M. Sutula. 2014. How much is too much? Identifying benchmarks of adverse effects of macroalgae on the macrofauna in intertidal flats. Ecological Applications 24:300-314.

Journal Article20140782Eutrophication, Harmful Algal Blooms

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, B.W. Sweeney. 2014. Does DNA barcoding improve performance of traditional stream bioassessment metrics?. Freshwater Science 33:302-311.

Journal Article20140803Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Jackson, J.K., J.M. Battle, B.P. White, E.M. Pilgrim, E.D. Stein, P.E. Miller, B.W. Sweeney. 2014. Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications. Freshwater Science 33:312-324.

Journal Article20140811Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Rippy, M.A., R. Stein, B.F. Sanders, K. Davis, K. McLaughlin, J.F. Skinner, J. Kappeler, S.B. Grant. 2014. Small Drains, Big Problems: The Impact of Dry Weather Runoff on Shoreline Water Quality at Enclosed Beaches. Environmental Science and Technology 48:14168-14177.

Journal Article20140838Microbial Risk Assessment, Microbial Water Quality, Runoff Water Quality, Stormwater BMPs

Rogowski, P.A., E. Terrill, K.C. Schiff, S.Y. Kim. 2014. An assessment of the transport of southern California stormwater ocean discharges. Marine Pollution Bulletin 90:135-142.

Journal Article20140840Runoff Water Quality, Stormwater BMPs

Alvarez, D.A., K.A. Maruya, N.G. Dodder, W. Lao, E.T. Furlong, K.L. Smalling. 2014. Occurrence of contaminants of emerging concern along the California coast (2009-10) using passive sampling devices. Marine Pollution Bulletin 81:347-354.

Journal Article20140768Emerging Contaminants, Runoff Water Quality

Schiff, K.C., E.D. Stein, S. Aminzadeh, A. Boehm, G. Hildebrand, L. Honeybourne, I. Nasseri, P. Ode, S. Taylor, D. Senn, J. Smith, C. Sommers, E. Strecker. 2014. Southern California Stormwater Monitoring Coalition 2014 Research Agenda. Technical Report 828. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20140828Regional Monitoring, Southern California Stormwater Monitoring Coalition

Stein, E.D., M.C. Martinez, S. Stiles, P.E. Miller, E.V. Zakharov. 2014. Is DNA Barcoding Actually Cheaper and Faster than Traditional Morphological Methods? Results from a Survey of Freshwater Bioassessment Efforts in the United States. PLoS ONE 9:e95525.

Journal Article20140823Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Fernandez, L.A., W. Lao, K.A. Maruya, R.M. Burgess. 2014. Calculating the diffusive flux of persistent organic pollutants between sediments and the water column on the Palos Verdes Shelf Superfund Site using polymeric passive samplers. Environmental Science and Technology 48:3925-3934.

Journal Article20140819Sediment Quality

Greenstein, D.J., S.M. Bay, D.L. Young, S. Asato, K.A. Maruya, W. Lao. 2014. The use of sediment toxicity identification evaluation methods to evaluate clean up targets in an urban estuary. Integrated Environmental Assessment and Management 10:260-268.

Journal Article20140807Sediment Quality

Maruya, K.A., N.G. Dodder, C.L. Tang, W. Lao, D. Tsukada. 2014. Which coastal and marine environmental contaminants are truly emerging?. Environmental Science and Pollution Research 22:1644-1652.

Journal Article20140824Emerging Contaminants, Sediment Quality

Maruya, K.A., N.G. Dodder, S.B. Weisberg, D. Gregorio, J.S. Bishop, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, S. Bricker, K.L. Kimbrough, G.G. Lauenstein. 2014. The mussel watch California pilot study on contaminants of emerging concern (CECs): Synthesis and next steps. Marine Pollution Bulletin 81:355-363.

Journal Article20140769Emerging Contaminants, Runoff Water Quality

Raimondi, P. 2014. Characterization of the Rocky Intertidal Ecological Communities Associated with Southern California Areas of Special Biological Significance: Phase II. Technical Report 818. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20140818Regional Monitoring

Dodder, N.G., K.A. Maruya, P.L. Ferguson, R. Grace, S. Klosterhaus, M.J. La Guardia, G.G. Lauenstein, J. Ramirez. 2014. Occurrence of contaminants of emerging concern in mussels (Mytilus spp.) along the California coast and the influence of land use, storm water discharge, and treated wastewater effluent. Marine Pollution Bulletin 81:340-346.

Journal Article20140770Emerging Contaminants, Runoff Water Quality

Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans, D.A. Caron. 2014. Development, Comparison, and Validation Using ELISAs for the Determination of Domoic Acid in California Sea Lion Body Fluids. Journal of the Association of Official Analytical Chemists 97:345-355.

Journal Article20140820Climate Change, Eutrophication, Harmful Algal Blooms

Martinovic-Weigelt, D., A.C. Mehinto, G.T. Ankley, N.D. Denslow, L.B. Barber, K.E. Lee, R.J. King, H.L. Schoenfuss, A.L. Schroeder, D.L. Villeneuve. 2014. Transcriptomic Effects-Based Monitoring for Endocrine Active Chemicals: Assessing Relative Contribution of Treated Wastewater to Downstream Pollution. Environmental Science and Technology 48:2385-2394.

Journal Article20140850Bioanalytical Cell Screening Assays, Emerging Contaminants, Runoff Water Quality

Maruya, K.A., N.G. Dodder, R.A. Schaffner, S.B. Weisberg, D. Gregorio, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, K.L. Kimbrough, G.G. Lauenstein, J.D. Christensen. 2014. Refocusing mussel watch on contaminants of emerging concern (CECs): The California pilot study (2009-10). Marine Pollution Bulletin 81:334-339.

Journal Article20140767Emerging Contaminants, Runoff Water Quality

Schiff, K.C., A.E. Fetscher, M.M. Hanken. 2014. Newport Bay Watershed Monitoring Evaluation. Technical Report 815. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20140815Regional Monitoring

Lee, R.F., K.A. Maruya, U. Warttinger, K. Bulski, A.N. Walker. 2014. Emulsions Produced After Oil Spills: Their Fate In Estuaries And Effects On The Grass Shrimp, Palaemonetes pugio And Blue Crab, Callinectes sapidus. in: C. Valenti (ed.), Crude Oils: Production, Environmental Impacts and Global Market Challenges pp. 1-22. Novinka Science Publishers. New York, NY.

Book Chapter20140877Emerging Contaminants, Sediment Quality

Parkerton, T.F., K.A. Maruya. 2013. Passive sampling in contaminated sediment assessment: Building consensus to improve decision-making. Integrated Environmental Assessment and Management 10:163-166.

Journal Article20130796Sediment Quality

Thompson, B., J.A. Ranasinghe, S. Lowe, A. Melwani, S.B. Weisberg. 2013. Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA. Environmental Monitoring and Assessment 185:2281-2295.

Journal Article20130751Eutrophication

White, B.P., E.M. Pilgrim, L.M. Boykin, E.D. Stein, R.D. Mazor. 2013. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 323-335. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.21

Day, J., F. Sklar, J. Cable, D. Childers, C. Coronado-Molina, S. Davis, S. Kelly, C. Madden, B. Perez, E. Reyez, D. Rudnick, M. Sutula. 2013. The salinity transition zone between the Southern Everglades and Florida Bay. in: J.W. Day, A. Yanez-Arancibia (eds.), Gulf of Mexico: Origin, Waters, and Biota - Volume 4: Ecosystem-Based Management pp. 1-24. Texas A&M University Press. College Station, TX.

Book Chapter20130787

Griffith, J.F., B.A. Layton, A.B. Boehm, P.A. Holden, J.A. Jay, C. Hagedorn, C.D. McGee, S.B. Weisberg. 2013. The California Microbial Source Identification Manual: A Tiered Approach to Identifying Fecal Pollution Sources to Beaches. Technical Report 804. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130804Microbial Source Tracking, Microbial Water Quality

Dorsch, D.E., R.C. Colli-Dula, S.M. Bay, D.J. Greenstein, L. Wilborg, D. Petschauer, N.D. Denslow. 2013. Gene expression of fathead minnows exposed to two types of treated municipal wastewater effluents. Environmental Science and Technology 47:11268-11277.

Journal Article20130784Emerging Contaminants

Greenstein, D.J., S.M. Bay, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K. Ritter, K.C. Schiff. 2013. Regional assessment of marine and estuarine sediment toxicity in Southern California, USA. Environmental Monitoring and Assessment 185:2055-2065.

Journal Article20130746Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Vidal-Dorsch, D.E., R.C. Colli-Dula, S.M. Bay, D.J. Greenstein, L. Wiborg, D. Petschauer, N.D. Denslow. 2013. Gene expression of fathead minnows (Pimephales promelas) exposed to two types of treated municipal wastewater effluents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 137-151. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.10

Fetscher, A.E., M. Sutula, L.B. Busse, E.D. Stein. 2013. Condition of California perennial wadeable streams based on algal indicators. Technical Report 781. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130781Bioassessment, Eutrophication, Indices Of Biotic Integrity

Stewart, J.R., A.B. Boehm, E.A. Dubinsky, T.T. Fong, K.D. Goodwin, J.F. Griffith, R.T. Noble, O.C. Shanks, K. Vijayavel, S.B. Weisberg. 2013. Recommendations following a multi-laboratory comparison of microbial source tracking methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 581-593. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.37

Stewart, J.R., A.B. Boehm, E.A. Dubinsky, T.-T. Fong, K.D. Goodwin, J.F. Griffith, R.T. Noble, O.C. Shanks, K. Vijayavel, S.B. Weisberg. 2013. Recommendations following a multi-laboratory comparison of microbial source tracking methods. Water Research 47:6829-6838.

Journal Article20130774Microbial Source Tracking, Microbial Water Quality

Layton, B.A., Y. Cao, D.L. Ebentier, K. Hanley, E. Balleste, J. Brandao, M. Byappanahalli, R. Converse, A.H. Farnleitner, J. Gentry- Shields and. 2013. Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 445-459. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.28

Sinigalliano, C.D., J. Ervin, L.C. Van De Werfhorst, B.D. Badgley, E. Balleste, J. Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, J.A. Jay, B.A. Layton, C. Lee, J. Lee, W.G. Meijer, R. Noble, M.R. Raith, H. Ryu, M.J. Sadowsky, A. Schriewer, D. Wang, D. Wanless, R.L. Whitman, S. Wuertz, J.W. Santo Domingo. 2013. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. Water Research 47:6883-6896.

Journal Article20130790Microbial Source Tracking, Microbial Water Quality

Raith, M.R., D.L. Ebentier, Y. Cao, J.F. Griffith, S.B. Weisberg. 2013. Factors affecting the relationship between quantitative polymerase chain reaction (qPCR) and culture-based enumeration of Enterococcus in environmental waters. Journal of Applied Microbiology 116:737-746.

Journal Article20130801Microbial Risk Assessment, Microbial Water Quality

Stein, E.D. 2013. Using regional stormwater monitoring programs to provide reference data for wetland mitigation performance evaluation. National Wetlands Newsletter 35:13-14.

Journal Article20130785Regional Monitoring, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Raith, M.R., C.A. Kelty, J.F. Griffith, A. Schriewer, S. Wuertz, S. Mieszkin, M. Gourmelon, G.H. Reischer, A.H. Farnleitner, J.S. Ervin, P.A. Holden, D.L. Ebentier, J.A. Jay, D. Wang, A.B. Boehm, T. Gim Aw, J.B. Rose, E. Balleste, W.G. Meijer, M. Sivaganesan, O.C. Shanks. 2013. Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources. Water Research 47:6921-6928.

Journal Article20130773Microbial Source Tracking, Microbial Water Quality

Raith, M.R., C.A. Kelty, J.F. Griffith, A. Schriewer, S. Wuertz, S. Mieszkin, M. Gourmelon, G.H. Reischer, A.H. Farnleitner, J.S. Ervin, P.A. Holden, D.L. Ebentier, J.A. Jay, D. Wang, A.B. Boehm, T.G. Aw, J.B. Rose, E. Balleste, W.G. Meijer, M. Sivaganesan, O.C. Shanks. 2013. Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 491-500. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.31

Ervin, J.S., T.L. Russell, B.A. Layton, K.M. Yamahara, D. Wang, L.M. Sassoubre, Y. Cao, C.A. Kelty, M. Sivaganesan, A.B. Boehm, P.A. Holden, S.B. Weisberg, O.C. Shanks. 2013. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 555-566. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.35

Ervin, J.S., T.L. Russell, B.A. Layton, K.M. Yamahara, D. Wang, L.M. Sassoubre, Y. Cao, C.A. Kelty, M. Sivaganesan, A.B. Boehm, P.A. Holden, S.B. Weisberg, O.C. Shanks. 2013. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods. Water Research 47:6873-6882.

Journal Article20130793Microbial Source Tracking, Microbial Water Quality

Lackey, L.G., E.D. Stein. 2013. Evaluation of design-based sampling options for monitoring stream and wetland extent and distribution in California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 377-388. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.24

Lackey, L.G., E.D. Stein. 2013. Evaluation of design-based sampling options for monitoring stream and wetland extent and distribution in California. Wetlands 33:717-725.

Journal Article20130759

Cao, Y., L.C. Van De Werfhorst, E.A. Dubinsky, B.D. Badgley, M.J. Sadowsky, G.L. Andersen, J.F. Griffith, P.A. Holden. 2013. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 461-474. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.29

Cao, Y., L.C. Van De Werfhorst, E.A. Dubinsky, B.D. Badgley, M.J. Sadowsky, G.L. Andersen, J.F. Griffith, P.A. Holden. 2013. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Research 47:6862-6872.

Journal Article20130771Microbial Source Tracking, Microbial Water Quality

Burke, M.P., T.S. Hogue, A. Kinoshita, J. Barco, C. Wessel, E.D. Stein. 2013. Pre- and post-fire pollutant loads in an urban fringe watershed in Southern California. Environmental Monitoring and Assessment 185:10131-10145.

Journal Article20130795Runoff Water Quality

Mazor, R.D., E.D. Stein, P.R. Ode, K.C. Schiff. 2013. Integrating intermittent streams into watershed assessments: Applicability of an index of biotic integrity. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 357-375. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.23

Cao, Y., C. Hagedorn, O.C. Shanks, D. Wang, J. Ervin, J.F. Griffith, B.A. Layton, C.D. McGee, T.E. Riedel, S.B. Weisberg. 2013. Towards establishing a human fecal contamination index for microbial source tracking. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 567-579. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.36

Fetscher, A.E. 2013. Development of Algal Indices of Biotic Integrity for Southern California Wadeable Streams and Recommendations for their Applications, v3. Technical Report 730. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130730Bioassessment, Indices Of Biotic Integrity

Cao, Y., C. Hagedorn, O.C. Shanks, D. Wang, J. Ervin, J.F. Griffith, B.A. Layton, C.D. McGee, T.E. Riedel, S.B. Weisberg. 2013. Towards establishing a human fecal contamination index in microbial source tracking. International Journal of Chemical and Environmental Engineering Systems 4:46-58.

Journal Article20130812Microbial Source Tracking, Microbial Water Quality

Stancheva, R., R.G. Sheath, B.A. Read, K.D. McArthur, C. Schroepfer, J.P. Kociolek, A.E. Fetscher. 2013. Nitrogen-fixing cyanobacteria (free living and diatom endosymbionts): Their use in southern California stream bioassessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 205-222. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.14

Stancheva, R., R.G. Sheath, B.A. Read, K.D. McArthur, C. Schroepfer, J.P. Kociolek, A.E. Fetscher. 2013. Nitrogen-fixing cyanobacteria (free-living and diatom endosymbionts): their use in southern California stream bioassessment. Hydrobiologia 720:111-127.

Journal Article20130778Bioassessment, Eutrophication, Indices Of Biotic Integrity

Cao, Y., M. Sivaganesan, J. Kinzelman, A.D. Blackwood, R.T. Noble, R.A. Haugland, J.F. Griffith, S.B. Weisberg. 2013. Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods. Water Research 47:233-241.

Journal Article20130742Microbial Water Quality

Lopez, S.R., T.S. Hogue, E.D. Stein. 2013. A framework for evaluating regional hydrologic sensitivity to climate change using archetypal watershed modeling. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 389-408. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.25

Harwood, V.J., A.B. Boehm, L.M. Sassoubre, K. Vijayavel, J.R. Stewart, T.-T. Fong, M.P. Caprais, R.R. Converse, D. Diston, J. Ebdon, J.A. Fuhrman, M. Gourmelon, J. Gentry-Shields, J.F. Griffith, D.R. Kashian, R.T. Noble, H. Taylor, M. Wicki. 2013. Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. Water Research 47:6929-6943.

Journal Article20130791Microbial Source Tracking, Microbial Water Quality

Vidal-Dorsch, D.E., S.M. Bay, C. Ribecco, L.J. Sprague, M. Angert, C. Ludka, O. Carnevali, D.J. Greenstein, D. Schlenk, K.M. Kelley, J.A. Reyes, S. Snyder, B. Vanderford, L.C. Wiborg, D. Petschauer, R. Sasik, M. Baker, G. Hardiman. 2013. Genomic and phenotypic response of hornyhead turbot exposed to municipal wastewater effluents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 153-168. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.11

Layton, B.A., Y. Cao, D.L. Ebentier, K. Hanley, E. Balleste, J. Brandao, M. Byappanahalli, R. Converse, A. Farnleitner, J. Gentry-Shields, M.L. Gidley, M. Gourmelon, C. Soo Lee, J. Lee, S. Lozach, T. Madi, W.G. Meijer, R. Noble, L. Peed, G.H. Reischer, R. Rodrigues, J.B. Rose, A. Schriewer, C. Sinigalliano, S. Srinivasan, J. Stewart, L.C. Van De Werfhorst, D. Wang, R. Whitman, S. Wuertz, J. Jay, P.A. Holden, A.B. Boehm, O. Shanks, J.F. Griffith. 2013. Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. Water Research 47:6897-6908.

Journal Article20130779Microbial Source Tracking, Microbial Water Quality

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2013. Eutrophication and Nutrient Cycling in Santa Margarita River Estuary: A Summary of Baseline Studies for Monitoring Order R9-2006-0076. Technical Report 635. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130635Eutrophication, Harmful Algal Blooms

Harwood, V.J., A.B. Boehm, L.M. Sassoubre, K. Vijayavel, J.R. Stewart, T.T. Fong, M.P. Caprais, R.R. Converse, D. Diston, J. Ebdon, J.A. Fuhrman, M. Gourmelon, J. Gentry- Shields, J.F. Griffith, D.R. Kashian, R.T. Noble, H. Taylor, M. Wicki. 2013. Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 501-521. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.32

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality. Technical Report 710. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710Eutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix A). Technical Report 710.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710.AEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix B). Technical Report 710.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710.BEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Sapozhnikova, Y., E. Wirth, K.C. Schiff, M. Fulton. 2013. Antifouling biocides in water and sediments from California marinas. Marine Pollution Bulletin 69:189-194.

Journal Article20130756Sediment Quality

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix C). Technical Report 710.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710.CEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix D). Technical Report 710.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710.DEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Ghosh, U., S.K. Driscoll, R.M. Burgess, M.T.O. Jonker, D. Reible, F. Gobas, Y. Choi, S.E. Apitz, K.A. Maruya, W.R. Gala, M. Mortimer, C. Beegan. 2013. Passive Sampling Methods for Contaminated Sediments: Practical Guidance for Selection, Calibration, and Implementation. Integrated Environmental Assessment and Management 10:210-223.

Journal Article20130806Sediment Quality

Howard, M.D.A., G. Robertson, M. Sutula, B.H. Jones, N.P. Nezlin, Y. Chao, H. Frenzel, M.J. Mengel, D.A. Caron, B. Seegers, A. Sengupta, E. Seubert, D.W. Diehl, S.B. Weisberg. 2013. Southern California Bight 2008 Regional Monitoring Program: VII. Water Quality (Appendix E). Technical Report 710.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130710.EEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, L. Stratton. 2013. A regional survey of the extent and magnitude of eutrophication in Mediterranean estuaries of southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 223-244. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.15

Schriewer, A., K.D. Goodwin, C.D. Sinigalliano, A.M. Cox, D. Wanless, J. Bartkowiak, D.L. Ebentier, K.T. Hanley, J. Ervin, L.A. Deering, O.C. Shanks, L.A. Peed, W.G. Meijer, J.F. Griffith, J. SantoDomingo, J.A. Jay, P.A. Holden, S. Wuertz. 2013. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 541-553. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.34

Schriewer, A., K.D. Goodwin, C.D. Sinigalliano, A.M. Cox, D. Wanless, J. Bartkowiak, D.L. Ebentier, K.T. Hanley, J. Ervin, L.A. Deering, O.C. Shanks, L.A. Peed, W.G. Meijer, J.F. Griffith, J. SantoDomingo, J.A. Jay, P.A. Holden, S. Wuertz. 2013. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. Water Research 47:6909-6920.

Journal Article20130792Microbial Source Tracking, Microbial Water Quality

Ranasinghe, J.A., E.D. Stein, M.R. Frazier, D.J. Gillett. 2013. Development of Puget Sound Benthic Indicators. Technical Report 755. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130755Bioassessment, Indices Of Biotic Integrity, Sediment Quality

Bourlat, S.J., A. Borja, J. Gilbert, M.I. Taylor, N. Davies, S.B. Weisberg, J.F. Griffith, T. Lettieri, D. Field, J. Benzie, F.O. Glockner, N. Rodriguez-Ezpeleta, D.P. Faith, T.P. Bean, M. Obst. 2013. Genomics in marine monitoring: New opportunities for assessing marine health status. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 115-135. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.09

Bourlat, S.J., A. Borja, J. Gilbert, M.I. Taylor, N. Davies, S.B. Weisberg, J.F. Griffith, T. Lettieri, D. Field, J. Benzie, F.O. Glockner, N. Rodriguez-Ezpeleta, D.P. Faith, T.P. Bean, M. Obst. 2013. Genomics in marine monitoring: New opportunities for assessing marine health status. Marine Pollution Bulletin 74:19-31.

Journal Article20130762DNA Barcoding, Regional Monitoring

Sengupta, A., M. Sutula, K. McLaughlin, M.D.A. Howard, L.L. Tiefenthaler, T. Von Bitner. 2013. Terrestrial nutrient loads and fluxes to the Southern California Bight, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 245-258. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.16

Arnold, B.F., K.C. Schiff, J.F. Griffith, J.S. Gruber, V. Yau, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, S.B. Weisberg, J.M. Colford Jr. 2013. Swimmer illness associated with marine water exposure and water quality indicators: Impact of widely used assumptions. Epidemiology 24:845-853.

Journal Article20130780Microbial Risk Assessment, Microbial Water Quality

Arnold, B.F., K.C. Schiff, J.F. Griffith, J.S. Gruber, V. Yau, C.C. Wright, T.J. Wade, S. Burns, J.M. Hayes, C. McGee, M. Gold, Y. Cao, S.B. Weisberg, J.M. Colford Jr. 2013. Swimmer illness associated with marine water exposure and water quality indicators: Impact of widely used assumptions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 611-624. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.39

Stein, E.D., B. Bledsoe. 2013. Framework for Developing Hydromodification Monitoring Programs. Technical Report 752. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130752Ecohydrology

Baker, M.E., D.E. Vidal-Dorsch, C. Ribecco, L.J. Sprague, M. Angert, N. Lekmine, C. Ludka, A. Martella, E. Ricciardelli, S.M. Bay, J.R. Gully, K.M. Kelley, C. Schlenk, O. Carnevali, R. Sasik, G. Hardiman. 2013. Molecular analysis of endocrine disruption in hornyhead turbot at wastewater outfalls in southern California using a second generation multi-species microarray. PLoS ONE 8:e75553.

Journal Article20130783Emerging Contaminants

Stein, E.D., B. Bledsoe. 2013. Modeling and Managing Hydromodification Effects: Summary of Available Tools and Decision-Making Approach. Technical Report 753. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130753Ecohydrology

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, B.W. Sweeney. 2013. Does DNA barcoding improve performance of traditional stream bioassessment metrics?. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 309-321. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.20

Ebentier, D.L., K.T. Hanley, Y. Cao, B.D. Badgley, A.B. Boehm, J.S. Ervin, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, C.A. Kelty, S. Lozach, C. McGee, L.A. Peed, M.R. Raith, H. Ryu, M.J. Sadowsky, E.A. Scott, J. Santo Domingo, A. Schriewer, C.D. Sinigalliano, O.C. Shanks, L.C. Van De Werfhorst, D. Wang, S. Wuertz, J.A. Jay. 2013. Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 433-444. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.27

Ebentier, D.L., K.T. Hanley, Y. Cao, B.D. Badgley, A.B. Boehm, J.S. Ervin, K.D. Goodwin, M. Gourmelon, J.F. Griffith, P.A. Holden, C.A. Kelty, S. Lozach, C.M.c.G.e.e. , L.A. Peed, M.R. Raith, H. Ryu, M.J. Sadowsky, E.A. Scott, J.S. Domingo, A. Schriewer, C.D. Sinigalliano, O.C. Shanks, L.C. Van De Werfhorst, D. Wang, S. Wuertz, J.A. Jay. 2013. Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods. Water Research 47:6839-6848.

Journal Article20130789Microbial Source Tracking, Microbial Water Quality

Sinigalliano, C.D., J. Ervin, L.C. Van De Werfhorst, B. Badgley, E. Ballest?, J. Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon. 2013. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 523-539. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.33

Panteleev, G., V. Luchin, N.P. Nezlin, T. Kikuchi. 2013. Seasonal climatologies of oxygen and phosphates in the Bering Sea reconstructed by variational data assimilation approach. Polar Science 7:214-232.

Journal Article20130809

McLaughlin, K., J.A. Sohm, G.A. Cutter, M.W. Lomas, A. Paytan. 2013. Phosphorus cycling in the Sargasso Sea: Investigation using the oxygen isotopic composition of phosphate, enzyme-labeled fluorescence, and turnover times. Global Biogeochemical Cycles 27:375-387.

Journal Article20130758Eutrophication

Alvarez, D., K.A. Maruya, N.G. Dodder, W. Lao, E. Furlong, K. Smalling. 2013. Occurrence of contaminants of emerging concern along the California coast (2009-10) using passive sampling devices. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 49-59. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.05

Vidal-Dorsch, D.E., S.M. Bay, C. Ribecco, L.J. Sprague, M. Angert, C. Ludka, E. Ricciardelli, O. Carnevali, D.J. Greenstein, D. Schlenk, K.M. Kelley, J.A. Reyes, S. Snyder, B. Vanderford, L.C. Wiborg, D. Petschauer, R. Sasik, M. Baker, G. Hardiman. 2013. Genomic and phenotypic response of hornyhead turbot exposed to municipal wastewater effluents. Aquatic Research 140-141:174-184.

Journal Article20130772Emerging Contaminants

Maruya, K.A., D. Schlenk, P.D. Anderson, N.D. Denslow, J.E. Drewes, A.W. Olivieri, G.I. Scott, S.A. Snyder. 2013. An adaptive, comprehensive monitoring strategy for chemicals of emerging concern (CECs) in California's aquatic ecosystems. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 1-12. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.01

Stein, E.D., B.P. White, R.D. Mazor, P.E. Miller, E.M. Pilgrim. 2013. Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates. PLoS ONE 8:e51273.

Journal Article20130741Bioassessment, DNA Barcoding

Maruya, K.A., D. Schlenk, P.D. Anderson, N.D. Denslow, J.E. Drewes, A.W. Olivieri, G.I. Scott, S.A. Snyder. 2013. An adaptive, comprehensive monitoring strategy for chemicals of emerging concern (CECs) in California's aquatic ecosystems. Integrated Environmental Assessment and Management 10:69-77.

Journal Article20130797Bioanalytical Cell Screening Assays, Emerging Contaminants

Sutula, M., H. Bailey, S. Poucher. 2013. Science Supporting Dissolved Oxygen Objectives in California Estuaries. Technical Report 684. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130684Eutrophication, Harmful Algal Blooms

Love, D.C., R.A. Rodriguez, C.D. Gibbons, J.F. Griffith, Q. Yu, J. Stewart, M.D. Sobsey. 2013. Human viruses and viral indicators in marine water at two beaches in southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 595-610. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.38

Stein, E.D., M.R. Cover, A.E. Fetscher, C. O'Reilly, R. Guardado, C.W. Solek. 2013. Reach-scale geomorphic and biological effects of localized streambank armoring. Journal of the American Water Resources Association 49:780-792.

Journal Article20130754Ecohydrology

Fetscher, A.E., R. Stancheva, J.P. Kociolek, R.G. Sheath, E.D. Stein, R.D. Mazor, P.R. Ode, L.B. Busse. 2013. Development and comparison of stream indices of biotic integrity using diatoms vs. non-diatom algae vs. a combination. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 183-204. Southern California Coastal Water Research Project. Costa Mesa, CA.

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Fetscher, A.E., R. Stancheva, J.P. Kociolek, R.G. Sheath, E.D. Stein, R.D. Mazor, P.R. Ode, L.B. Busse. 2013. Development and comparison of stream indices of biotic integrity using diatoms vs. non-diatom algae vs. a combination. Journal of Applied Phycology 26:433-450.

Journal Article20130776Bioassessment, Indices Of Biotic Integrity

Greenstein, D.J., S.M. Bay, D. Young, S. Asato, K.A. Maruya, W. Lao. 2013. The use of sediment toxicity identification evaluation methods to evaluate clean-up targets in an urban estuary. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 169-181. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.12

Tunis, L., K. Lunde, R. Payne, G. Sibbald, C. Clark, K. O'Connor, R. Clark, A. Solomesheh, C. Witham, M. Denn, C. Roberts, M. Stevens, C. Grosso, J. Collins, S. Pearce, C. Solek, E.D. Stein, C. Harvey, D. Weixelman, P. Jones, M. Scianni. 2013. California Rapid Assessment Method for Wetlands User's Manual Version 6.1. Technical Report 788. California Wetlands Monitoring Workgroup. Sacramento, CA.

Technical Report20130788Bioassessment

Cao, Y., L.C. Van De Werfhorst, E.A. Scott, M.R. Raith, P.A. Holden, J.F. Griffith. 2013. Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 475-490. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.30

Cao, Y., L.C. Van De Werfhorst, E.A. Scott, M.R. Raith, P.A. Holden, J.F. Griffith. 2013. Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP. Water Research 47:6944-6955.

Journal Article20130765Microbial Source Tracking, Microbial Water Quality

Maruya, K.A., N.G. Dodder, S.B. Weisberg, D. Gregorio, J.S. Bishop, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, S. Bricker, K.L. Kimbrough, G.G. Lauenstein. 2013. The Mussel Watch California Pilot Study on contaminants of emerging concern (CECs): Synthesis and next steps. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 61-73. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.06

Resh, V.H., L.A. Beche, J.E. Lawrence, R.D. Mazor, E.P. McElravy, A.P. O'Dowd, D. Rudnick, S.M. Carlson. 2013. Long-term population and community patterns of benthic macroinvertebrates and fishes in Northern California Mediterranean-climate streams. Hydrobiologia 719:93-118.

Journal Article20130786Bioassessment, Indices Of Biotic Integrity

Dodder, N.G., K.A. Maruya, P.L. Ferguson, R. Grace, S. Klosterhaus, a.n.d. MJ La Guardia, G.G. Lauenstein, J. Ramirez. 2013. Occurrence of contaminants of emerging concern in mussels (Mytilus spp.) along the California coast and the influence of land use, stormwater discharge, and treated wastewater effluent. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 37-47. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.04

Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller, E.L. Seubert, D.A. Caron. 2013. Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 259-272. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.17

Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller, E.L. Seubert, D.A. Caron. 2013. Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007. Journal of Plankton Research 35:1080-1092.

Journal Article20130799Eutrophication, Harmful Algal Blooms

Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron. 2013. Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 273-291. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.18

Bay, S.M., D.J. Greenstein, S.L. Moore, K.J. Ritter, J.A. Ranasinghe. 2013. Evaluation of Sediment Condition Using California's Sediment Quality Objectives Assessment Framework. Technical Report 764. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130764Sediment Quality, Sediment Quality Assessment Frameworks

Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron. 2013. Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA. Environmental Science and Pollution Research 20:6878-6895.

Journal Article20130763Eutrophication, Harmful Algal Blooms

Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans, D.A. Caron. 2013. Development, comparison and validation using ELISAs for the analysis of domoic acid in California sea lion body fluids. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 293-308. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.19

Brown, J.S., E.D. Stein, D. Ackerman, J.H. Dorsey, J. Lyon, P.M. Carters. 2013. Metals and bacteria partitioning to various size particles in Ballona Creek storm water runoff. Environmental Toxicology and Chemistry 32:320-328.

Journal Article20130749Runoff Water Quality, Stormwater BMPs

Lydy, M.J., P.F. Landrum, A.M.P. Oen, M. Allinson, F. Smedes, A.D. Harwood, H. Li, K.A. Maruya, J. Liu. 2013. Passive sampling methods for contaminated sediments: State of the science for organic contaminants. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 75-94. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.07

Lydy, M.J., P.F. Landrum, A.M.P. Oen, M. Allinson, F. Smedes, A.D. Harwood, H. Li, K.A. Maruya, J. Liu. 2013. Passive sampling methods for contaminated sediments: State of the science for organic contaminants. Integrated Environmental Assessment and Management 10:167-178.

Journal Article20130798Sediment Quality

Lunde, K.B., M.R. Cover, R.D. Mazor, C.A. Sommers, V.H. Resh. 2013. Identifying reference conditions and quantifying biological variability within benthic macroinvertebrate communities in perennial and non-perennial northern California streams. Environmental Management 51:1262-1273.

Journal Article20130766Bioassessment, Indices Of Biotic Integrity

Ferguson, D.M., J.F. Griffith, C.D. McGee, S.B. Weisberg, C. Hagedorn. 2013. Comparison of Enterococcus species diversity in marine water and wastewater using enterolert and EPA method 1600. Journal of Environmental and Public Health 2013:11-16.

Journal Article20130761Microbial Source Tracking, Microbial Water Quality

Wang, P.F., M. Sutula, B. Chadwick, W. Choi. 2013. Watershed Loading, Hydrodynamic, and Water Quality Modeling in Support of the Loma Alta Slough Bacteria and Nutrient TMDL. Technical Report 666. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20130666Ecohydrology, Eutrophication

Maruya, K.A., N.G. Dodder, R.A. Schaffner, S.B. Weisberg, D. Gregorio, S. Klosterhaus, D.A. Alvarez, E.T. Furlong, K.L. Kimbrough, G.G. Lauenstein, J.D. Christensen. 2013. Refocusing Mussel Watch on contaminants of emerging concern (CECs): The California Pilot Study (2009-10). in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 27-35. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.03

Ghosh, U., S. Kane-Driscoll, R.M. Burgess, M.T.O. Jonker, D. Reible, F. Gobas, Y. Choi, S.E. Apitz, K.A. Maruya, W.R. Gala, M. Mortimer, C. Beegan. 2013. Passive sampling methods for contaminated sediments: Practical guidance for selection, calibration and implementation. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 95-114. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.08

Sengupta, A., J.M. Lyons, D.J. Smith, J.E. Drewes, S.A. Snyder, A. Heil, K.A. Maruya. 2013. The occurrence and fate of chemicals of emerging concern (CECs) in coastal urban rivers receiving discharge of treated municipal wastewater effluent. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 13-25. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.02

Sengupta, A., M.J. Lyons, D.J. Smith, J.E. Drewes, S.A. Snyder, A. Heil, K.A. Maruya. 2013. The occurrence and fate of chemicals of emerging concern (CECs) in coastal urban rivers receiving discharge of treated municipal wastewater effluent. Environmental Toxicology and Chemistry 33:350-358.

Journal Article20130802Emerging Contaminants, Runoff Water Quality

Ode, P., A. Rehn, R.D. Mazor, K.C. Schiff, E.D. Stein, J. May, L. Brown, D. Herbst, D.J. Gillett, K. Lunde, C.P. Hawkins. 2013. Evaluating the adequacy of a reference-site pool for the ecological assessment of streams in environmentally complex regions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 337-355. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.22

Boehm, A.B., L.C. Van De Werfhorst, J.F. Griffith, P.A. Holden, J.A. Jay, O.C. Shanks, D. Wanga, S.B. Weisberg. 2013. Performance of forty-one microbial source tracking methods: A twenty-seven lab evaluation study. Water Research 47:6812-6828.

Journal Article20130775Microbial Source Tracking, Microbial Water Quality

Boehm, A.B., L.C. Van De Werfhorst, J.F. Griffith, P.A. Holden, J.A. Jay, O.C. Shanks, D. Wang, S.B. Weisberg. 2013. Performance of forty-three microbial source tracking methods: A twenty-seven laboratory evaluation study. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2013 Annual Report pp. 409-431. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20132013.26

Lao, W., D. Tsukada, K.A. Maruya. 2012. The effect of co-occurring polychlorinated biphenyls on quantitation of toxaphene in fish tissue samples by gas chromatography negative ion mass spectrometry. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 61-72. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.05

Lao, W., D. Tsukada, K.A. Maruya. 2012. The effect of co-occurring polychlorinated biphenyls on quantitation of toxaphene in fish tissue samples by gas chromatography negative ion mass spectrometry. Journal of Chromatography A 1270:262-268.

Journal Article20120739Emerging Contaminants

Ebentier, D.L., M.R. Raith, Y. Cao, J.F. Griffith, S.B. Weisberg. 2012. Factors affecting the relationship between qPCR and culture-based enumeration of Enterococcus. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 253-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.17

Gillett, D.J., D.J. Pondella II, J. Freiwald, K.C. Schiff, J.E. Caselle, C. Shuman, S.B. Weisberg. 2012. Comparing volunteer and professionally collected monitoring data from the rocky subtidal reefs of Southern California, USA. Environmental Monitoring and Assessment 184:3239-3257.

Journal Article20120702Regional Monitoring

Piontkovski, S.A., N.P. Nezlin, A. Al-Azri, K. Al-Hashmi. 2012. Mesoscale eddies and variability of chlorophyll-a in the Sea of Oman. International Journal of Remote Sensing 33:5341-5346.

Journal Article20120732Eutrophication

Ranasinghe, J.A., K.I. Welch, P.N. Slattery, D.E. Montagne, D.D. Huff, H. Lee II, J.L. Hyland, B. Thompson, S.B. Weisberg, J.M. Oakden, D.B. Cadien, R.G. Velarde. 2012. Habitat-related benthic macrofaunal assemblages of bays and estuaries of the western United States. Integrated Environmental Assessment and Management 8:638-648.

Journal Article20120724Sediment Quality, Sediment Quality Assessment Frameworks

Pondella II, D.J., J. Williams, J. Claisse, R.A. Schaffner, K. Ritter, K.C. Schiff. 2012. Southern California Bight 2008 Regional Monitoring Program: V. Rocky Reefs. Technical Report 685. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120685Regional Monitoring, Southern California Bight Regional Monitoring Program

Miller, E.F., K.C. Schiff. 2012. Descriptive trends in SCB demersal fish assemblages since 1994. California Cooperative Oceanic Fisheries Investigations Reports 53:107-131.

Journal Article20120736Regional Monitoring, Southern California Bight Regional Monitoring Program

Miller, E.F., K.C. Schiff. 2012. Descriptive trends in Southern California Bight demersal fish assemblages, 1994-2008. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 129-144. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.10

Ranasinghe, J.A., E.D. Stein, P.E. Miller, S.B. Weisberg. 2012. Performance of two southern California benthic community condition indices using species abundance and presence-only data: Relevance to DNA barcoding. PLoS ONE 7:e40875.

Journal Article20120713Bioassessment, DNA Barcoding, Indices Of Biotic Integrity

Solek, C.W., E.D. Stein. 2012. An Evaluation of Wetland Restoration Projects in Southern California using the California Rapid Assessment Method (CRAM): A Final Report to the Southern California Wetlands Recovery Project. Technical Report 659. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120659Bioassessment

Setty, K., K.C. Schiff, S.B. Weisberg. 2012. Forty Years after the Clean Water Act: A Retrospective Look at the Southern California Coastal Ocean. Technical Report 727. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120727Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Shanks, O.C., M. Sivaganesan, L. Peed, C.A. Kelty, A.D. Blackwood, M.R. Greene, R.T. Noble, R.N. Bushon, E.A. Stelzer, J. Kinzelman, T. Anan'eva, C. Sinigalliano, D. Wanless, J.F. Griffith, Y. Cao, S.B. Weisberg, V.J. Harwood, C. Staley, K.H. Oshima, M. Varma, R.A. Haugland. 2012. Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. Environmental Science and Technology 46:945-953.

Journal Article20120689Microbial Water Quality

Shanks, O.C., M. Sivaganesan, L.i.n.d.s.a.y. Peed, C.A. Kelty, A.D. Blackwood, M.R. Greene, R.T. Noble, R.N. Bushon, E.A. Stelzer, J. Kinzelman, T. Anan'eva, C. Sinigalliano, D. Wanless, J.F. Griffith, Y. Cao, S.B. Weisberg, V.J. Harwood, C. Staley, K.H. Oshima, M. Varma, R.A. Haugland. 2012. Inter-laboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 273-286. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.19

Ryu, H., J.F. Griffith, I.U.H. Khan, S. Hill, T.A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, J. Santo Domingo. 2012. Comparison of gull feces-specific assays targeting the 16S rRNA gene of Catellicoccus marimammalium and Streptococcus spp. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 309-322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.22

Ryu, H., J.F. Griffith, I.U.H. Khan, S. Hill, T.A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, J. Santo Domingo. 2012. Comparison of gull feces-specific assays targeting the 16S rRNA genes of Catellicoccus marimammalium and Streptococcus spp. Applied and Environmental Microbiology 78:1909-1916.

Journal Article20120693Microbial Risk Assessment, Microbial Water Quality

Ryu, H., M. Henson, M. Elk, C. Toledo-Hernandez, J.F. Griffith, D. Blackwood, R. Noble, M. Gourmelon, S. Glassmeyer, J. Santo Domingo. 2012. Development of quantitative PCR assays targeting 16S rRNA gene of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 341-356. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.24

Converse, R.R., J.F. Griffith, R.T. Noble, R.A. Haugland, K.C. Schiff, S.B. Weisberg. 2012. Correlation between quantitative polymerase chain reaction and culture-based methods for measuring Enterococcus over various temporal scales and three California marine beaches. Applied and Environmental Microbiology 78:1237-1242.

Journal Article20120731Microbial Water Quality

Brown, J.S., D. Ackerman, E.D. Stein. 2012. Continuous in situ characterization of particulate sizes in urban stormwater: Method testing and refinement. Journal of Environmental Engineering 138:673-679.

Journal Article20120704Runoff Water Quality, Stormwater BMPs

Bay, S.M., C.D. Vulpe, A.V. Loguinov, A. Arai. 2012. Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification. Technical Report 660. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120660Sediment Quality

Dodder, N.G., K.A. Maruya, G.G. Lauenstein, J. Ramirez, K.J. Ritter, K.C. Schiff. 2012. Distribution and sources of polybrominated diphenyl ethers in the southern California Bight. Environmental Toxicology and Chemistry 31:2239-2245.

Journal Article20120717Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Bay, S.M., C.D. Vulpe, A.V. Loguinov, A. Arai. 2012. Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification (Appendices B-D). Technical Report 660.Z. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120660.ZSediment Quality

Bay, S.M., S.B. Weisberg. 2012. Framework for interpreting sediment quality triad data. Integrated Environmental Assessment and Management 8:589-596.

Journal Article20120720Sediment Quality, Sediment Quality Assessment Frameworks

Maruya, K.A., D.E. Vidal-Dorsch, S.M. Bay, J.W. Kwon, K. Xia, K.L. Armbrust. 2012. Organic contaminants of emerging concern in sediments and flatfish collected near outfalls discharging treated wastewater effluent to the southern California Bight. Environmental Toxicology and Chemistry 31:2683-2688.

Journal Article20120737Sediment Quality

Cao, Y., L.C. Van De Werfhorst, B. Sercu, J.L.S. Murray, P.A. Holden. 2012. Application of an integrated community analysis approach for microbial source tracking in a coastal creek. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 299-308. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.21

Cao, Y., J.F. Griffith, S. Dorevitch, S.B. Weisberg. 2012. Effectiveness of qPCR permutations, internal controls and dilution as means for minimizing the impact of inhibition while measuring Enterococcus in environmental waters. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 287-298. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.20

Cao, Y., J.F. Griffith, S. Dorevitch, S.B. Weisberg. 2012. Effectiveness of qPCR permutations, internal controls and dilution as means for minimizing the impact of inhibition while measuring Enterococcus in environmental waters. Journal of Applied Microbiology 113:66-75.

Journal Article20120712Microbial Water Quality

Cao, Y., M. Sivaganesan, J. Kinzelman, A.D. Blackwood, R.T. Noble, R.A. Haugland, J.F. Griffith, S.B. Weisberg. 2012. Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 261-272. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.18

Ritter, K.J., S.M. Bay, R.W. Smith, D.E. Vidal-Dorsch, L.J. Field. 2012. Development and evaluation of sediment quality guidelines based on benthic macrofauna responses. Integrated Environmental Assessment and Management 8:610-624.

Journal Article20120722Sediment Quality, Sediment Quality Assessment Frameworks

Mazor, R.D., K.C. Schiff, P. Ode, E.D. Stein. 2012. Final Report on Bioassessment in Nonperennial Streams - Report to the State Water Resources Control Board. Technical Report 695. Southern California Coastal Water Research Projec. Costa Mesa, CA.

Technical Report20120695Bioassessment, Indices Of Biotic Integrity

Bay, S.M., K.J. Ritter, D.E. Vidal-Dorsch, L.J. Field. 2012. Comparison of national and regional sediment quality guidelines for classifying sediment toxicity in California. Integrated Environmental Assessment and Management 8:597-609.

Journal Article20120721Sediment Quality, Sediment Quality Assessment Frameworks

Lopez, S.R., T.S. Hogue, E.D. Stein. 2012. A framework for evaluating regional hydrologic sensitivity to climate change using archetypal watershed modeling. Hydrology and Earth System Sciences Discussions 9:13729-13771.

Journal Article20120740Climate Change, Ecohydrology

Beegan, C., S.M. Bay. 2012. Transitioning sediment quality assessment into regulations: Challenges and solutions in implementing California's sediment quality objectives. Integrated Environmental Assessment and Management 8:586-588.

Journal Article20120719Sediment Quality, Sediment Quality Assessment Frameworks

Thompson, B., S.B. Weisberg, A. Melwani, S. Lowe, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, R.J. Diaz, W. Fields, M. Kellogg, D.E. Montagne, P.R. Ode, D.J. Reish, P.N. Slattery. 2012. Low levels of agreement among experts using best professional judgment to assess benthic condition in the San Francisco Estuary and Delta. Ecological Indicators 12:167-173.

Journal Article20120663Bioassessment, Sediment Quality

Green, L., M. Sutula, P. Fong. 2012. How much is too much? Identifying benchmarks of adverse effects of macroalgae on the macrobenthic community in estuarine intertidal flats. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 171-188. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.12

Sutula, M., L. Green, G. Cicchetti, N. Detenbeck, P. Fong. 2012. Thresholds of adverse effects of macroalgal abundance and sediment organic matter on benthic habitat quality in estuarine intertidal flats. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 189-210. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.13

Lao, W., L.L. Tiefenthaler, D.J. Greenstein, K.A. Maruya, S.M. Bay, K. Ritter, K.C. Schiff. 2012. Pyrethroids in southern California coastal sediments. Environmental Toxicology and Chemistry 31:1649-1656.

Journal Article20120705Emerging Contaminants, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Greenstein, D.J., S.M. Bay. 2012. Selection of methods for assessing sediment toxicity in California bays and estuaries. Integrated Environmental Assessment and Management 8:625-637.

Journal Article20120723Sediment Quality, Sediment Quality Assessment Frameworks

Forsgren, K.L., S.M. Bay, D.E. Vidal-Dorsch, X. Deng, G. Lu, J. Armstrong, J.R. Gully, D. Schlenk. 2012. Annual and seasonal evaluation of reproductive status of hornyhead turbot at municipal wastewater outfalls in the Southern California Bight. Environmental Toxicology and Chemistry 31:2701-2710.

Journal Article20120744Emerging Contaminants

Sapozhnikova, Y., E. Wirth, K.C. Schiff, M. Fulton. 2012. Antifouling biocides in water and sediments from California marinas. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 1-10. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.01

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication. Technical Report 711. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120711Eutrophication, Regional Monitoring, Southern California Bight Regional Monitoring Program

Stein, E.D., F. Federico, D.B. Booth, B.P. Bledsoe, C. Bowles, Z. Rubin, G.M. Kondolf, A. Sengupta. 2012. Hydromodification Assessment and Management in California. Technical Report 667. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120667Ecohydrology

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix A). Technical Report 711.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120711.AEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Howard, M.D.A., M. Sutula, D. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin, A. Sengupta. 2012. Comparison of natural and anthropogenic nutrient sources in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 29-48. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.03

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix B). Technical Report 711.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120711.BEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix C). Technical Report 711.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120711.CEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

McLaughlin, K., M. Sutula, L. Busse, S. Anderson, J. Crooks, R. Dagit, D. Gibson, K. Johnston, N.P. Nezlin, L. Stratton. 2012. Southern California Bight 2008 Regional Monitoring Program: VIII. Estuarine Eutrophication (Appendix D). Technical Report 711.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120711.DEutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Nezlin, N.P., M. Sutula, R.P. Stumpf, A. Sengupta. 2012. Phytoplankton blooms detected by SeaWiFS along the central and southern California coast. Journal of Geophysical Research 117:C07004.

Journal Article20120708Eutrophication, Harmful Algal Blooms

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna. Technical Report 665. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Lao, W., J. Gan. 2012. Enantioselective degradation of warfarin in soils. Chirality 24:54-59.

Journal Article20120687Emerging Contaminants

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix A). Technical Report 665.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.ABioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Setty, K. 2012. Adapting and Adopting Rapid Molecular Methods for Beach Water Quality Monitoring. Urban Coast 3:48-53.

Journal Article20120698Microbial Water Quality

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix B). Technical Report 665.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.BBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Weisberg, S.B., K.E. Setty. 2012. Oceanic pollution. in: R.H. Friis (ed.), The Praeger Handbook of Environmental Health - Volume 1: Foundations of the Field pp. 133-154. ABC-CLIO, LLC. Santa Barbara, CA.

Book Chapter20120738Regional Monitoring, Southern California Bight Regional Monitoring Program, Trash Pollution

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix C). Technical Report 665.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.CBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix D). Technical Report 665.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.DBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix E). Technical Report 665.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.EBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix F). Technical Report 665.F. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.FBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Ranasinghe, J.A., K.C. Schiff, C.A. Brantley, L.L. Lovell, D.B. Cadien, T.K. Mikel, R.G. Velarde, S. Holt, S.C. Johnson. 2012. Southern California Bight 2008 Regional Monitoring Program: VI. Benthic Macrofauna (Appendix G). Technical Report 665.G. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120665.GBioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Bight Regional Monitoring Program

Stancheva, R., A.E. Fetscher, R.G. Sheath. 2012. A novel quantification method for stream-inhabiting, non-diatom benthic algae, and its application in bioassessment. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 211-226. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.14

Stancheva, R., A.E. Fetscher, R.G. Sheath. 2012. A novel quantification method for stream-inhabiting, non-diatom benthic algae, and its application in bioassessment. Hydrobiologia 684:225-239.

Journal Article20120691Bioassessment

Hammerstrom, K.K., J.A. Ranasinghe, S.B. Weisberg, J.S. Oliver, W.R. Fairey, P.N. Slattery, J.M. Oakden. 2012. Effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries. Integrated Environmental Assessment and Management 8:649-658.

Journal Article20120725Bioassessment, Sediment Quality

Maraccini, P.A., D.M. Ferguson, A.B. Boehm. 2012. Diurnal variation in Enterococcus species composition in polluted ocean water and a potential role for the enterococcal carotenoid in protection against photoinactivation. Applied and Environmental Microbiology 78:305-310.

Journal Article20120707Microbial Water Quality

Dark, S., E.D. Stein, D. Bram, J. Osuna. 2012. Historical Ecology as a Living Resource for Informing Urban Wetland Restoration. Urban Coast 3:54-60.

Journal Article20120697

Bledsoe, B.P., E.D. Stein, R.J. Hawley, D. Booth. 2012. Framework and tool for rapid assessment of stream susceptibility to hydromodification. Journal of the American Water Resources Association 48:788-808.

Journal Article20120715Ecohydrology

Maruya, K.A., P.F. Landrum, R.M. Burgess, J.P. Shine. 2012. Incorporating contaminant bioavailability into sediment quality assessment frameworks. Integrated Environmental Assessment and Management 8:659-673.

Journal Article20120726Sediment Quality, Sediment Quality Assessment Frameworks

Stein, E.D., J.S. Brown, T.S. Hogue, M.P. Burke, A. Kinoshita. 2012. Stormwater contaminant loading following southern California wildfires. Environmental Toxicology and Chemistry 31:2625-2638.

Journal Article20120733Runoff Water Quality

Stein, E.D., J.S. Brown, T.S. Hogue, M.P. Burke, A. Kinoshita. 2012. Stormwater contaminant loading following wildfires. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 11-28. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.02

Reyes, J.A., D.E. Vidal-Dorsch, D. Schlenk, S.M. Bay, J.L. Armstrong, J.R. Gully, C. Cash, M. Baker, T.D. Stebbins, G. Hardiman, K.M. Kelley. 2012. Evaluation of reproductive endocrine status in hornyhead turbot sampled from southern California's urbanized coastal environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 227-242. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.15

Reyes, J.A., D.E. Vidal-Dorsch, D. Schlenk, S.M. Bay, J.L. Armstrong, J.R. Gully, C. Cash, M. Baker, T.D. Stebbins, G. Hardiman, K.M. Kelley. 2012. Evaluation of reproductive endocrine status in hornyhead turbot sampled from southern California's urbanized coastal environments. Environmental Toxicology and Chemistry 31:2689-2700.

Journal Article20120745Emerging Contaminants

Stein, E.D., B.P. White, R.D. Mazor, P.E. Miller, E.M. Pilgrim. 2012. Optimizing ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 243-252. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.16

Anderson, P.D., N.D. Denslow, J.E. Drewes, A.W. Olivieri, D. Schlenk, G.I. Scott, S.A. Snyder. 2012. Monitoring Strategies for Chemicals of Emerging Concern (CECs) in California's Aquatic Ecosystems: Recommendations of a Science Advisory Panel. Technical Report 692. Southern California Coastal Water Research Project Authority. Costa Mesa, CA.

Technical Report20120692Emerging Contaminants

Stein, E.D., M.R. Cover, A.E. Fetscher, C. O'Reilly, R. Guardado, C.W. Solek. 2012. Reach-scale geomorphic and biological effects of localized stream bank armoring. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 113-128. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.09

Fernandez, L.A., W. Lao, K.A. Maruya, C. White, R.M. Burgess. 2012. Passive sampling to measure background dissolved persistent organic pollutant concentrations in the water column of the Palos Verdes Shelf Superfund site. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 49-60. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.04

Fernandez, L.A., W. Lao, K.A. Maruya, C. White, R.M. Burgess. 2012. Passive sampling to measure baseline dissolved persistent organic pollutant concentrations in the water column of the Palos Verdes shelf superfund site. Environmental Science and Technology 46:11937-11947.

Journal Article20120735Emerging Contaminants

Stein, E.D., L.G. Lackey. 2012. Technical Design for a Status & Trends Monitoring Program to Evaluate Extent and Distribution of Aquatic Resources in California. Technical Report 706. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120706

Raimondi, P., K.C. Schiff, D. Gregorio. 2012. Characterization of the Rocky Intertidal Ecological Communities Associated with Southern California Areas of Special Biological Significance. Technical Report 703. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120703Regional Monitoring

Goodwin, K.D., M. McNay, Y. Cao, D. Ebentier, M. Madison, J.F. Griffith. 2012. A multi-beach study of Staphylococcus aureus, MRSA, and enterococci in seawater and beach sand. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 357-373. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.25

Colford Jr, J.M., K.C. Schiff, J.F. Griffith, V. Yau, B.F. Arnold, C.C. Wright, J.S. Gruber, T.J. Wade, S. Burns, J. Hayes, C. McGee, M. Gold, Y. Cao, R.T. Noble, R. Haugland, S.B. Weisberg. 2012. Using rapid indicators for Enterococcus to assess the risk of illness after exposure to urban runoff contaminated marine water. Water Research 46:2176-2186.

Journal Article20120699Microbial Risk Assessment, Microbial Water Quality

Goodwin, K.D., M. McNay, Y. Cao, D. Ebentier, M. Madison, J.F. Griffith. 2012. A multi-beach study of Staphylococcus aureus, MRSA, and enterococci in seawater and beach sand. Water Research 46:4195-4207.

Journal Article20120709Microbial Water Quality

Lao, W., K.A. Maruya, D. Tsukada. 2012. A two-component mass balance model for calibration of solid-phase microextraction fibers for pyrethroids in seawater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 85-98. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.07

Lao, W., K.A. Maruya, D. Tsukada. 2012. A two-component mass balance model for calibration of solid-phase microextraction fibers for pyrethroids in seawater. Analytical Chemistry 84:9362-9369.

Journal Article20120734Emerging Contaminants

Bao, L.J., K.A. Maruya, S.A. Snyder, E.Y. Zeng. 2012. China's water pollution by persistent organic pollutants. Environmental Pollution 163:100-108.

Journal Article20120696

Resh, V.H., L.A. Beche, J.E. Lawrence, R.D. Mazor, E.P. McElravy, A.P. O'Dowd, D. Rudnick, S.M. Carlson. 2012. Long-term population and community patterns of benthic macroinvertebrates and fishes in northern California Mediterranean-climate streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 145-170. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.11

Vidal-Dorsch, D.E., S.M. Bay, K.A. Maruya, S.A. Snyder, R.A. Trenholm, B.J. Vanderford. 2012. Contaminants of emerging concern in municipal wastewater effluents and marine receiving water. Environmental Toxicology and Chemistry 31:2674-2682.

Journal Article20120743Emerging Contaminants

Bay, S.M., D.E. Vidal-Dorsch. 2012. Determining the impacts of contaminants of emerging concern in marine ecosystems. Environmental Toxicology and Chemistry 31:2672-2673.

Journal Article20120748Emerging Contaminants, Sediment Quality

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, K.A. Maruya, J.R. Gully. 2012. Integrated coastal effects study: synthesis of findings. Environmental Toxicology and Chemistry 31:2711-2722.

Journal Article20120747Emerging Contaminants, Sediment Quality

Teixeira, H., S.B. Weisberg, A. Borja, J.A. Ranasinghe, D.B. Cadien, R.G. Velarde, L.L. Lovell, D. Pasko, C.A. Phillips, D.E. Montagne, K.J. Ritter, F. Salas, J.C. Marques. 2012. Calibration and validation of the AZTI's Marine Biotic Index (AMBI) for Southern California marine bays. Ecological Indicators 12:84-95.

Journal Article20120653Bioassessment, Indices Of Biotic Integrity

Hawley, R.J., B.P. Bledsoe, E.D. Stein, B.E. Haines. 2012. Channel evolution model of semiarid stream response to urban-induced hydromodification. Journal of the American Water Resources Association 48:722-744.

Journal Article20120714Ecohydrology

Solek, C.W., M. Sutula, E.D. Stein, C. Roberts, R. Clark, K. O'Connor, K.J. Ritter. 2012. Determining the health of California's coastal salt marshes using rapid assessment. Wetland Science and Practice 29:8-28.

Journal Article20120701

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, J.C. Wolf, D. Pham, A.V. Loguinov, C. Vulpe. 2012. Using gene expression to assess the status of fish from anthropogenically influenced estuarine wetlands. Environmental Science and Technology 46:69-77.

Journal Article20120688Bioassessment, Sediment Quality

McQuaig, S., J.F. Griffith, V.J. Harwood. 2012. The association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 323-340. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.23

Hoh, E., N.G. Dodder, S.J. Lehotay, K.C. Pangallo, C.M. Reddy, K.A. Maruya. 2012. Nontargeted comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry method and software for inventorying persistent and bioaccumulative contaminants in marine environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 73-84. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.06

McQuaig, S., J.F. Griffith, V.J. Harwood. 2012. Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Applied and Environmental Microbiology 78:6423-6432.

Journal Article20120718Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Hoh, E., N.G. Dodder, S.J. Lehotay, K.C. Pangallo, C.M. Reddy, K.A. Maruya. 2012. Nontargeted comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry method and software for inventorying persistent and bioaccumulative contaminants in marine environments. Environmental Science and Technology 46:8001-8008.

Journal Article20120716Emerging Contaminants

Sengupta, A., E.D. Stein, R.J. Hawley. 2012. General regression neural networks to estimate hydromodification response in semi-arid southern California streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2012 Annual Report pp. 99-112. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20122012.08

Jenkins, S., J. Paduan, P. Roberts, D. Schlenk, J. Weis. 2012. Management of Brine Discharges to Coastal Waters: Recommendations of a Science Advisory Panel. Technical Report 694. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20120694

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix E). Technical Report 661.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661.ERegional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Thompson, B., J.A. Ranasinghe, S. Lowe, A. Melwani, S.B. Weisberg. 2011. Benthic macrofaunal assemblages of the San Francisco Estuary and Delta. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 163-176. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.11

Greenstein, D.J., S.M. Bay, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K. Ritter, K.C. Schiff. 2011. Regional assessment of marine and estuarine sediment toxicity in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 237-247. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.18

Miller, E.F., K.C. Schiff. 2011. Spatial distribution of Southern California Bight demersal fishes in 2008. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 271-284. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.21

Griffith, J.F., S.B. Weisberg. 2011. Challenges in implementing new technology for beach water quality monitoring: Lessons from a California demonstration project. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 177-186. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.12

Griffith, J.F., S.B. Weisberg. 2011. Challenges in implementing new technology for beach water quality monitoring: Lessons from a California demonstration project. Marine Technology Society Journal 45:65-73.

Journal Article20110647Microbial Water Quality

Ranasinghe, J.A., E.D. Stein, P.E. Miller, S.B. Weisberg. 2011. Relative performance of the Southern California Benthic Response Index using species abundance and presence-only data: Relevance to DNA Barcoding. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 297-303. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.23

Tiefenthaler, L.L., E.D. Stein, K.C. Schiff. 2011. Levels and patterns of fecal indicator bacteria in stormwater runoff from homogenous land use sites and urban watersheds. Journal of Water and Health 9:279-290.

Journal Article20110649Microbial Water Quality, Runoff Water Quality, Stormwater BMPs

Converse, R.R., J.F. Griffith, R.T. Noble, R.A. Haugland, K.C. Schiff, S.B. Weisberg. 2011. Correlation between quantitative polymerase chain reaction and culture-based methods for measuring Enterococcus over various temporal scales and three California marine beaches. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 187-196. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.13

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates. Technical Report 655. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655Regional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix B). Technical Report 655.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.BRegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix D). Technical Report 655.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.DRegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix A). Technical Report 655.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.ARegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix C). Technical Report 655.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.CRegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix E). Technical Report 655.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.ERegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix F). Technical Report 655.F. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.FRegional Monitoring, Southern California Bight Regional Monitoring Program

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix G). Technical Report 655.G. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.GRegional Monitoring, Southern California Bight Regional Monitoring Program

Sabin, L.D., K.A. Maruya, W. Lao, D.W. Diehl, D. Tsukada, K.D. Stolzenbach, K.C. Schiff. 2011. A pilot study of air-water exchange of organochlorine compounds at three coastal estuaries in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 71-82. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.05

Allen, M.J., D. Cadien, D.W. Diehl, K. Ritter, S.L. Moore, C. Cash, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, W. Power, A.K. Latker, J. Williams, J.L. Armstrong, E. Miller, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: Volume IV. Demersal Fishes and Megabenthic Invertebrates (Appendix H). Technical Report 655.H. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110655.HRegional Monitoring, Southern California Bight Regional Monitoring Program

Dodder, N.G., K.A. Maruya, G.G. Lauenstein, J. Ramirez, K.J. Ritter, K.C. Schiff. 2011. Distribution and sources of polybrominated diphenyl ethers in the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 261-270. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.20

Cao, Y., C.H. Wu, G.L. Andersen, P.A. Holden. 2011. Community analysis-based methods. in: C. Hagedorn, A. Blanch, V. Harwood (eds.), Microbial Source Tracking: Methods, Applications, and Case Studies pp. 251-282. Springer. New York, NY.

Book Chapter20110728Microbial Source Tracking, Microbial Water Quality

Maruya, K.A., D.E. Vidal-Dorsch, S.M. Bay, J.W. Kwon, K. Xia, K.L. Armbrust. 2011. Organic contaminants of emerging concern in sediments and flatfish collected near outfalls discharging treated municipal wastewater effluent to the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 365-373. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.28

Cao, Y., L.C. Van De Werfhorst, B. Sercu, J.L.S. Murray, P.A. Holden. 2011. Application of an integrated community analysis approach for microbial source tracking in a coastal creek. Environmental Science and Technology 45:7195-7201.

Journal Article20110690Microbial Source Tracking, Microbial Water Quality

Burke, M.P., T.S. Hogue, J. Barco, C. Wessel, A.Y. Kinoshita, E.D. Stein. 2011. Dynamics of pre- and post-fire pollutant loads in an urban fringe watershed. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 61-70. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.04

Cao, Y., C.D. McGee, J.F. Griffith, S.B. Weisberg. 2011. Method repeatability for measuring Enterococcus in southern California beach sands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 207-211. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.15

Lu, J., H. Ryu, J.S. Domingo, J.F. Griffith, N. Ashbolt. 2011. Molecular detection of Campylobacter spp. in California Gull (Larus Californicus) excreta. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 213-221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.16

Cao, Y., C.D. McGee, J.F. Griffith, S.B. Weisberg. 2011. Method repeatability for measuring Enterococcus in southern California beach sands. Letters in Applied Microbiology 53:656-659.

Journal Article20110729Microbial Water Quality

Lu, J., H. Ryu, J.W. Santo Domingo, J.F. Griffith, N. Ashbolt. 2011. Molecular detection of Campylobacter spp. in California gull (Larus californicus) excreta. Applied and Environmental Microbiology 77:5034-5039.

Journal Article20110651Microbial Source Tracking, Microbial Water Quality

Beller, E., R. Grossinger, M. Salomon, S. Dark, E.D. Stein, B. Orr, P. Downs, T. Longcore, G. Coffman, A. Whipple, R. Askevold, B. Stanford, J. Beagle. 2011. Historical ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats. Technical Report 662. San Francisco Estuary Institute. Oakland, CA.

Technical Report20110662

Liu, S., T. Hogue, E.D. Stein, J. Barco. 2011. Contemporary and Historical Hydrologic Analysis of the Ballona Creek Watershed. Technical Report 683. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110683Ecohydrology

Hawley, R.J., B.P. Bledsoe, E.D. Stein. 2011. Hydromodification Effects on Flow Peaks and Durations in Southern California Urbanizing Watersheds. Technical Report 654. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110654Ecohydrology

Mazor, R.D., D.J. Gillett, K.C. Schiff, K. Ritter, E.D. Stein. 2011. Ecological Condition of Watersheds in Coastal Southern California: Progress Report of the Stormwater Monitoring Coalition's Stream Monitoring Program First Year (2009). Technical Report 639. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110639Bioassessment, Indices Of Biotic Integrity, Regional Monitoring, Southern California Stormwater Monitoring Coalition

Borja, A., A. Basset, S. Bricker, J.-C. Dauvin, M. Elliott, T. Harrison, J.-C. Marques, S.B. Weisberg, R. West. 2011. Classifying ecological quality and integrity of estuaries. in: E. Wolanski, D.S. McLusky (eds.), Treatise on Estuarine and Coastal Science: Volume 1 pp. 125-162. Academic Press. Waltham, MA.

Book Chapter20110700

McKee, L., M. Sutula, A. Gilbreath, J. Beagle, D. Gluchowski, J. Hunt. 2011. Numeric Nutrient Endpoint Development for San Francisco Bay Estuary: Literature Review and Data Gaps Analysis. Technical Report 644. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110644Eutrophication, Harmful Algal Blooms

Grossinger, R., E.D. Stein, K. Cayce, R. Askevold, S. Dark, A. Whipple. 2011. Historical Wetlands of the Southern California Coast: An Atlas of US Coast Survey T-sheets, 1851-1889. Technical Report 589. San Francisco Estuary Institute. Richmond, CA.

Technical Report20110589

Bay, S.M., D.J. Greenstein, M. Jacobe, C. Barton, K. Sakamoto, D. Young, K.J. Ritter, K.C. Schiff. 2011. Southern California Bight 2008 Regional Monitoring Program: I. Sediment Toxicity. Technical Report 640. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110640Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in Buena Vista Lagoon, Carlsbad, California. Technical Report 638. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110638Eutrophication, Harmful Algal Blooms

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in Loma Alta Slough, Oceanside, California. Technical Report 630. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110630Eutrophication, Harmful Algal Blooms

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2011. Eutrophication and Nutrient Cycling in San Elijo Lagoon, Encinitas, California. Technical Report 636. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110636Eutrophication, Harmful Algal Blooms

Ross, M.S., E.L. Pulster, M.B. Ejsmont, E.A. Chow, C.M. Hessel, K.A. Maruya, C. Wong. 2011. Enantioselectivity of polychlorinated biphenyl atropisomers in sediment and biota from the Turtle/Brunswick River estuary, Georgia, USA. Marine Pollution Bulletin 63:548-55.

Journal Article20110656Sediment Quality

Lao, W., L.L. Tiefenthaler, D.J. Greenstein, K.A. Maruya, S.M. Bay, K. Ritter, K.C. Schiff. 2011. Pyrethroids in southern California coastal sediments. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 249-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.19

Greenstein, D.J., S.M. Bay. 2011. Selection of methods for assessing sediment toxicity in California bays and estuaries. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 119-136. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.08

Stein, E.D., K. Vyverberg, G.M. Kondolf, K. Janes. 2011. Episodic Stream Channels: Imperatives for Assessment and Environmental Planning in California - Proceedings of a Special Technical Workshop. Technical Report 645. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110645Ecohydrology

Forsgren, K.L., S.M. Bay, D.E. Vidal-Dorsch, X. Deng, G. Lu, J. Armstrong, J.R. Gully, D. Schlenk. 2011. Annual and seasonal evaluation of reproductive status in hornyhead turbot at municipal wastewater outfalls in the Southern California Bight. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 375-388. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.29

Gregory, J.B., L.F. Webster, J.F. Griffith, J.R. Stewart. 2011. Improved detection and quantitation of norovirus from water. Journal of Virological Methods 172:38-45.

Journal Article20110648Microbial Water Quality

Brown, J.S., S.M. Bay. 2011. Temporal Assessment of Chemistry, Toxicity and Benthic Communities in Sediments at the Mouths of Chollas Creek and Paleta Creek, San Diego Bay. Technical Report 668. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110668Sediment Quality

Nezlin, N.P., M. Sutula, R.P. Stumpf, A. Sengupta. 2011. Phytoplankton blooms detected by SeaWiFS along the central and southern California coast. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 305-322. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.24

Dark, S., E.D. Stein, D. Bram, J. Osuna, J. Monteferante, T. Longcore, R. Grossinger, E. Beller. 2011. Historical Ecology of the Ballona Creek Watershed. Technical Report 671. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110671Ecohydrology

Bernstein, B., K. Merkel, B. Chesney, M. Sutula. 2011. Recommendations for a Southern California Regional Eelgrass Monitoring Program. Technical Report 632. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110632Regional Monitoring

Solek, C.W., E.D. Stein, M. Sutula. 2011. Demonstration of an integrated watershed assessment using a three-tiered assessment framework. Wetlands Ecology and Management 19:459-474.

Journal Article20110664

Lyon, G.S., M. Sutula. 2011. Effluent discharges to the Southern California Bight from large municipal wastewater treatment facilities from 2005 to 2009. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 223-236. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.17

Maraccini, P.A., D.M. Ferguson, A.B. Boehm. 2011. Diurnal variation in Enterococcus species composition in polluted ocean water: A potential role for the enterococcal carotenoid in protection against photoinactivation. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 197-206. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.14

Sutula, M. 2011. Review of Indicators for Development of Nutrient Numeric Endpoints in California Estuaries. Technical Report 646. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110646Eutrophication, Harmful Algal Blooms

Bledsoe, B.P., E.D. Stein, R.J. Hawley, D. Booth. 2011. Framework and tool for rapid assessment of stream susceptibility to hydromodification. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 25-47. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.02

Greenstein, D.J., S.M. Bay, D. Young. 2011. Sediment Toxicity Identification Evaluation for the Mouths of Chollas and Paleta Creeks, San Diego. Technical Report 669. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110669Sediment Quality

McLaughlin, K., J.A. Sohm, G.A. Cutter, M.W. Lomas, A. Paytan. 2011. Phosphorus cycling in the Sargasso Sea: Investigation using the oxygen isotopic composition of phosphate, enzyme labeled fluorescence, and turnover times. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 323-334. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.25

Schiff, K.C., L.L. Tiefenthaler. 2011. Seasonal flushing of pollutant concentrations and loads in urban stormwater. Journal of the American Water Resources Association 47:136-142.

Journal Article20110642Runoff Water Quality, Stormwater BMPs

Schiff, K.C., B. Luk, D. Gregorio. 2011. Impact of stormwater discharges to water quality in California's areas of special biological significance. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 285-295. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.22

Stein, E.D., M. Cover, C. O'Reilly, J.J. Hayes, A.E. Fetscher, R. Ambrose, L.S. Fong, R. Guardado, C. Solek, G.M. Kondolf, C. Alford, C. Zuri. 2011. Evaluation of Stream Condition Indicators for Determining Effects of Direct Hydromodification via Stream Bank Armoring. Technical Report 643. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110643Ecohydrology

Vidal-Dorsch, D.E., S.M. Bay, K.A. Maruya, S.A. Snyder, R.A. Trenholm, B.J. Vanderford. 2011. Contaminants of emerging concern in municipal wastewater effluents and marine receiving water. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 351-364. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.27

Bay, S.M., J.R. Gully, D.J. Greenstein, P.J. Markle, J.A. Ranasinghe. 2011. Relationship of sediment toxicity to benthic community impacts and water body management decisions. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 137-148. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.09

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2011. Assessing water quality in Marine Protected Areas from Southern California, USA. Marine Pollution Bulletin 62:2780-2786.

Journal Article20110672Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Brown, J.S., E.D. Stein, D. Ackerman, J.H. Dorsey, J. Lyon, P.M. Carter. 2011. Metals and bacteria partitioning to various size particles in Ballona Creek stormwater runoff. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 48-60. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.03

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2011. Southern California Bight 2008 Regional Monitoring Program: II. Areas of Special Biological Significance. Technical Report 641. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110641Regional Monitoring, Southern California Bight Regional Monitoring Program

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, K.A. Maruya, J.R. Gully. 2011. Integrated coastal effects study: Synthesis of findings. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 335-350. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.26

Bay, S.M., D.E. Vidal-Dorsch, D. Schlenk, K.M. Kelley, M.E. Baker, K.A. Maruya, J.R. Gully. 2011. Sources and Effects of Endocrine Disruptors and other Contaminants of Emerging Concern in the Southern California Bight Coastal Ecosystem. Technical Report 650. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110650Emerging Contaminants, Sediment Quality

Jacobs, D.K., E.D. Stein, T. Longcore. 2011. Classification of California estuaries based on natural closure patterns: Templates for restoration and management (Revised). Technical Report 619.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110619.AClimate Change, Sea Level Rise

Teixeira, H., S.B. Weisberg, A. Borja, J.A. Ranasinghe, D.B. Cadien, R.G. Velarde, L.L. Lovell, D. Pasko, C.A. Phillips, D.E. Montagne, K.J. Ritter, F. Salas, J.C. Marques. 2011. Calibration and validation of the AZTI's Marine Biotic Index (AMBI) for southern California marine bays. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 99-118. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.07

Hawley, R.J., B.P. Bledsoe, E.D. Stein, B.E. Haines. 2011. Channel evolution model of response to urbanization in southern California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 1-24. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.01

Solek, C.W., M. Sutula, E.D. Stein, C. Roberts, R. Clark, K. O'Connor, K.J. Ritter. 2011. Determining the health of California's coastal salt marshes using rapid assessment. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 83-97. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.06

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, J. Wolf, D. Pham, A.V. Loguinov, C. Vulpe. 2011. Using gene expression to assess the status of fish from anthropogenically influenced estuarine wetlands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2011 Annual Report pp. 149-162. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20112011.10

Ackerman, D., E.D. Stein, K.J. Ritter. 2011. Evaluating performance of stormwater sampling approaches using a dynamic watershed model. Environmental Monitoring and Assessment 180:283-302.

Journal Article20110657Runoff Water Quality, Stormwater BMPs

Hagedorn, C., S.B. Weisberg. 2011. Chemical-Based Fecal Source Tracking Methods. in: C. Hagedorn, A.R. Blanch, V.J. Harwood (eds.), Microbial Source Tracking: Methods, Applications, and Case Studies pp. 189-206. Springer. Basingstoke, UK.

Book Chapter20110652Microbial Source Tracking, Microbial Water Quality

Boehm, A.B., K.M. Yamahara, S.P. Walters, B.A. Layton, D.P. Keymer, R.S. Thompson, K.L. Knee, M. Rosener. 2011. Dissolved inorganic nitrogen, soluble reactive phosphorous, and microbial pollutant loading from tropical rural watersheds in Hawai'i to the coastal ocean during non-storm conditions. Estuaries and Coasts 34:925-936.

Journal Article20110658Runoff Water Quality, Stormwater BMPs

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry. Technical Report 661. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix A). Technical Report 661.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661.ARegional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix B). Technical Report 661.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661.BRegional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix C). Technical Report 661.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661.CRegional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Schiff, K.C., R. Gossett, K. Ritter, L.L. Tiefenthaler, N. Dodder, W. Lao, K.A. Maruya. 2011. Southern California Bight 2008 Regional Monitoring Program: III. Sediment Chemistry (Appendix D). Technical Report 661.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20110661.DRegional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Hamilton, M.J., A.Z. Hadi, J.F. Griffith, S. Ishii, M.J. Sadowsky. 2010. Large scale analysis of virulence genes in Escherichia coli strains isolated from Avalon Bay, CA. Water Research 44:5463-5473.

Journal Article20100681Microbial Water Quality

Lao, W., D. Tsukada, D.J. Greenstein, S.M. Bay, K.A. Maruya. 2010. Analysis, occurrence, and toxic potential of pyrethroids, and fibronil in sediments from an urban estuary. Environmental Toxicology and Chemistry 29:843-851.

Journal Article20100609Emerging Contaminants, Sediment Quality

Dickson, A., R. Gossett, D. Gregorio, B. Jones, S. Murray, B. Posthumus, K.C. Schiff. 2010. Summation of Findings Natural Water Quality Committee 2006-2009. Technical Report 625. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100625

Ferguson, D.M., J.F. Griffith, C.D. McGee, S.B. Weisberg. 2010. Comparison of Enterococcus species selectivity using Enterolert and EPA Method 1600. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 67-73. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.06

Gillett, D.J., D.J. Pondella II, K.C. Schiff, J. Freiwald, J.E. Casselle, C. Shuman, S.B. Weisberg. 2010. Comparing volunteer and professionally collected monitoring data from subtidal rocky reefs in southern California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 219-237. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.17

Setty, K.E., K.C. Schiff, J.R. Gully, S.B. Weisberg. 2010. Evolution of monitoring program design for marine outfalls in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 1-13. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.01

Thompson, B., S.B. Weisberg, A.M.e.l.w.a.n.i. , S. Lowe, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, R.J. Diaz, W. Fields, M. Kellogg, D.E. Montagne, P.R. Ode, D.J. Reish, P.N. Slattery. 2010. Levels of agreement among experts using Best Professional Judgment to assess mesohaline and tidal freshwater benthic macrofaunal condition in the San Francisco Estuary and Delta. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 177-185. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.14

Mika, K.B., G. Imamura, C. Chang, V. Conway, G. Fernandez, J.F. Griffith, R.A. Kampalath, a.n.d. CM Lee, C.-C. Lin, R. Moreno, S. Thompson, R.L. Whitman, J.A. Jay. 2010. Pilot- and bench-scale testing of fecal indicator bacteria survival in marine beach sand near point sources. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 87-101. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.08

Noble, R.T., A.D. Blackwood, J.F. Griffith, C.D. McGee, S.B. Weisberg. 2010. Comparison of rapid quantitative PCR-based and conventional culture-based methods for enumeration of Enterococcus spp. and Escherichia coli in recreational waters. Applied and Environmental Microbiology 76:7437-7443.

Journal Article20100627Microbial Water Quality

Sabin, L.D., K.A. Maruya, W. Lao, D.W. Diehl, D. Tsukada, K.D. Stolzenbach, K.C. Schiff. 2010. Exchange of polycyclic aromatic hydrocarbons among the atmosphere, water, and sediment in coastal embayments of southern California, USA. Environmental Toxicology and Chemistry 29:265-274.

Journal Article20100608Sediment Quality

Lyon, G.S., E.D. Stein. 2010. Effluent discharges from offshore oil platforms to the outer continental shelf of southern California in 2005. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 29-43. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.03

Lyon, G.S., E.D. Stein. 2010. Effluent discharges to the Southern California Bight from power generating stations in 2005. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 15-28. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.02

Gossett, R., K.C. Schiff. 2010. Stormwater Monitoring Coalition Laboratory Guidance Document (Third Edition). Technical Report 615. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100615Regional Monitoring, Southern California Stormwater Monitoring Coalition

Teixeira, H., A. Borja, S.B. Weisberg, J.A. Ranasinghe, D.B. Cadien, D.M. Dauer, J.-C. Dauvin, S. Degraer, R.J. Diaz, A. Gremare, I. Karakassis, R.J. Llanso, L.L. Lovell, J.C. Marques, D.E. Montagne, A. Occhipinti-Ambrogi, R. Rosenberg, R. Sarda, L.C. Schaffner, R.G. Velarde. 2010. Assessing coastal benthic macrofauna community condition using best professional judgement - Developing consensus across North America and Europe. Marine Pollution Bulletin 60:589-600.

Journal Article20100612Bioassessment

Nezlin, N.P., I.G. Polikarpov, F.Y. Al-Yamani, D.V. Subba Rao, A.M. Ignatov. 2010. Satellite monitoring of climatic factors regulating phytoplankton variability in the Arabian (Persian) Gulf. Journal of Marine Systems 82:47-60.

Journal Article20100633Eutrophication, Harmful Algal Blooms

McLaughlin, K., M. Sutula, J. Cable, P. Fong. 2010. Eutrophication and Nutrient Cycling in Famosa Slough: A Summary of Baseline Data for Monitoring Order R9-2006-0076. Technical Report 629. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100629Eutrophication, Harmful Algal Blooms

Boerger, C.M., G.L. Lattin, S.L. Moore, C.J. Moore. 2010. Plastic ingestion by planktivorous fishes in the North Pacific Central Gyre. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 281-285. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.21

Boerger, C.M., G.L. Lattin, S.L. Moore, C.J. Moore. 2010. Plastic ingestion by planktivorous fishes in the North Pacific Gyre. Marine Pollution Bulletin 60:2275-2278.

Journal Article20100637Trash Pollution

Johnston, C., J.A. Unfar, J.F. Griffith, J.A. Gooch, J.R. Stewart. 2010. A real-time qPCR assay for the detection of the nifH gene of Methanobrevibater smithii, a potential indicator of sewage pollution. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 127-138. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.11

Johnston, C., J.A. Ufnar, J.F. Griffith, J.A. Gooch, J.R. Stewart. 2010. A real-time qPCR assay for the detection of the nifH gene of Methanobrevibater smithii, a potential indicator of sewage pollution. Journal of Applied Microbiology 109:1946-1956.

Journal Article20100680Microbial Source Tracking, Microbial Water Quality

Gregory, J.B., L.F. Webster, J.F. Griffith, J.R. Stewart. 2010. Improved detection and quantification of norovirus from water. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 139-152. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.12

Lee, C.M., J.F. Griffith, W. Kaiser, J.A. Jay. 2010. Covalently-linked immunomagnetic separation/adenosine triphosphate technique (Cov-IMS/ATP) enables rapid, in-field detection and quantification of Escherichia coli and Enterococcus spp. in freshwater and marine environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 75-85. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.07

Griffith, J.F., K.C. Schiff, G.S. Lyon, J.A. Fuhrman. 2010. Microbiological water quality at non-human influenced reference beaches in southern California during wet weather. Marine Pollution Bulletin 60:500-508.

Journal Article20100610Microbial Water Quality

Lee, C.M., J.F. Griffith, W. Kaiser, J.A. Jay. 2010. Covalently-linked immunomagnetic separation/adenosine triphosphate technique (Cov-IMS/ATP) enables rapid, in-field detection and quantification of Escherichia coli and Enterococcus spp. in freshwater and marine environments. Journal of Applied Microbiology 109:324-333.

Journal Article20100682Microbial Water Quality

Lao, W., J. Gan. 2010. Characterization of warfarin unusual peak profiles on oligoproline chiral high performance liquid chromatography columns. Journal of Chromatography A 1217:6545-6554.

Journal Article20100623Emerging Contaminants

Lao, W., J. Gan. 2010. Temperature effects on a doubly tethered diproline chiral stationary phase: Hold-up volume, enantioselectivity and robustness. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 57-66. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.05

Lao, W., J. Gan. 2010. Temperature effects on a doubly tethered diproline chiral stationary phase: Hold-up volume, enantioselectivity and robustness. Journal of Separation Science 33:3052-3059.

Journal Article20100622

Fetscher, A.E., M. Sutula, J.C. Callaway, V.T. Parker, M.C. Vasey, J.N. Collins, W.G. Nelson. 2010. Patterns in estuarine vegetation communities in two regions of California: Insights from a probabilistic survey. Wetlands 30:833-846.

Journal Article20100626

Stein, E.D., S. Dark, T. Longcore, R. Grossinger, N. Hall, M. Beland. 2010. Historical ecology as a tool for assessing landscape change and informing wetland restoration priorities. Wetlands 30:589-601.

Journal Article20100617Ecohydrology

Halliday, E., J.F. Griffith, R.J. Gast. 2010. Use of an exogenous plasmid standard and quantitative PCR to monitor spatial and temporal distribution of Enterococcus spp. in beach sands. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 103-112. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.09

Halliday, E., J.F. Griffith, R.J. Gast. 2010. Use of an exogenous plasmid standard and quantitative PCR to monitor spatial and temporal distribution of Enterococcus spp. in beach sands. Limnology and Oceanography: Methods 8:146-154.

Journal Article20100614Microbial Water Quality

Hammerstrom, K.K., J.A. Ranasinghe, S.B. Weisberg, J.S. Oliver, W.R. Fairey, P.N. Slattery, J.M. Oakden. 2010. The effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 187-198. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.15

Mazor, R.D., K.C. Schiff, K. Ritter, A. Rehn, P. Ode. 2010. Bioassessment tools in novel habitats: An evaluation of indices and sampling methods in low-gradient streams in California. Environmental Monitoring and Assessment 167:91-104.

Journal Article20100618Bioassessment, Indices Of Biotic Integrity

Booth, D.B., S.R. Dusterhoff, E.D. Stein, B.P. Bledsoe. 2010. Hydromodification Screening Tools: GIS-based catchment analyses of potential changes in runoff and sediment discharge. Technical Report 605. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100605Ecohydrology

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field Manual (Appendix A). Technical Report 606.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100606.AEcohydrology

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field Manual (Appendix B). Technical Report 606.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100606.BEcohydrology

Vidal-Dorsch, D.E., S.M. Bay, M.A. Mays, D.J. Greenstein, D. Young, D. Schlenk, K.M. Kelley. 2010. Biological responses of marine flatfish exposed to effluent. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 239-250. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.18

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Field manual for assessing channel susceptibility. Technical Report 606. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100606Ecohydrology

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix A). Technical Report 607.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100607.AEcohydrology

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix B). Technical Report 607.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100607.BEcohydrology

Maruya, K.A., P.F. Landrum, R.M. Burgess, J.P. Shine. 2010. Incorporating contaminant bioavailability into sediment quality assessment frameworks. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 153-175. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.13

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical Basis (Appendix C). Technical Report 607.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100607.CEcohydrology

Bledsoe, B.P., R.J. Hawley, E.D. Stein, D.B. Booth. 2010. Hydromodification Screening Tools: Technical basis for development of a field screening tool for assessing channel susceptibility to hydromodification. Technical Report 607. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100607Ecohydrology

Ranasinghe, J.A., K.C. Schiff, D.E. Montagne, T.K. Mikel, D.B. Cadien, R.G. Velarde, C.A. Brantley. 2010. Benthic macrofaunal community condition in the Southern California Bight, 1994-2003. Marine Pollution Bulletin 60:827-833.

Journal Article20100616Bioassessment, Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Svejkovsky, J., N.P. Nezlin, N.M. Mustain, J.B. Kum. 2010. Tracking stormwater discharge plumes and water quality of the Tijuana River with multispectral aerial imagery. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 261-280. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.20

Svejkovsky, J., N.P. Nezlin, N.M. Mustain, J.B. Kum. 2010. Tracking stormwater discharge plumes and water quality of the Tijuana River with multispectral aerial imagery. Estuarine, Coastal and Shelf Science 87:387-398.

Journal Article20100611Runoff Water Quality, Stormwater BMPs

Ramezani, M.K., D.P. Oliver, R.S. Kookana, W. Lao, G. Gill, C. Preston. 2010. Faster degradation of herbicidally-active enantiomer of imidazolinones in soils. Chemosphere 79:1040-1045.

Journal Article20100677Emerging Contaminants

Schiff, K.C., B. Luk, D. Gregorio. 2010. Status of California's Marine Water Quality Protected Areas. Technical Report 631. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100631Regional Monitoring

Brown, J.S., M. Sutula, C. Stransky, J. Rudolph, E. Byron. 2010. Sediment contaminant chemistry and toxicity of freshwater in urban wetlands in southern California. Journal of the American Water Resources Association 46:367-384.

Journal Article20100678Runoff Water Quality, Sediment Quality

Bay, S.M., D.J. Greenstein, K.A. Maruya, W. Lao. 2010. Toxicity Identification Evaluation of Sediment (Sediment TIE) in Ballona Creek Estuary: Final Report. Technical Report 634. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100634Sediment Quality

Harmful Algal Bloom Monitoring and Alert Program (HABMAP) Working Group. 2010. The Second Regional Workshop for Harmful Algal Blooms (HABs) in California Coastal Waters. Technical Report 620. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100620Eutrophication, Harmful Algal Blooms

Schiff, K.C., B. Luk, D. Gregorio, S. Gruber. 2010. Assessing water quality conditions in southern California's areas of special biological significance. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 251-260. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.19

Lawrence, J.E., K.B. Lunde, R.D. Mazor, L.A. Beche, E.P. McElravy, V.H. Resh. 2010. Long-term macroinvertebrate responses to climate change: Implications for biological assessment in Mediterranean-climate streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 199-217. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.16

Jacobs, D., E.D. Stein, T. Longcore. 2010. Classification of California estuaries based on natural closure patterns: Templates for restoration and management. Technical Report 619. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100619Climate Change, Eutrophication, Harmful Algal Blooms

Integrated Ocean Observing Systems and California Sea Grant and USC Sea Grant and Oregon Sea Grant and Washington Sea Grant and California Ocean Science Trust and Southern California Coastal Water. 2010. Ocean Acidification Impacts on Shellfish Workshop: Findings and Recommendations. Technical Report 624. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20100624Climate Change, Ocean Acidification And Hypoxia

Sayre, J.M., R.G. Adams, W. Lao, K.A. Maruya. 2010. Comparing solid phase microextraction and polyethylene passive samplers for measuring ultra-low aqueous concentrations of regulated organic pollutants. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 45-56. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.04

Hamilton, M.J., A.Z. Hadi, J.F. Griffith, M.J. Sadowsky. 2010. Large scale analysis of virulence genes in Escherichia coli strains isolated from Avalon Bay, CA. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2010 Annual Report pp. 113-125. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20102010.10

2009. Assessing coastal benthic macrofauna community condition using best professional judgement: Developing consensus across North America and Europe. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 43-59. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.04

2009. Bioassessment tools in novel habitats: An evaluation of indices and sampling methods in low-gradient streams in California. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 61-74. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.05

Lao, W., D. Tsukada, D.J. Greenstein, S.M. Bay, K.A. Maruya. 2009. Analysis, occurrence, and toxic potential of pyrethroids and fipronil in sediments from the Ballona Creek estuary. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 277-289. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.19

Hagedorn, C., S.B. Weisberg. 2009. Chemical-based fecal source tracking methods: current status and guidelines for evaluation. Reviews in Environmental Science and Biotechnology 8:275-287.

Journal Article20090601Microbial Source Tracking, Microbial Water Quality

Meng, X.Z., M.E. Blasius, R.W. Gossett, K.A. Maruya. 2009. Polybrominated diphenyl ethers in pinnipeds stranded along the southern California coast. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 263-276. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.18

Meng, X.-Z., M.E. Blasius, R.W. Gossett, K.A. Maruya. 2009. Polybrominated diphenyl ethers in pinnipeds stranded along the southern California coast. Environmental Pollution 157:2731.

Journal Article20090597Emerging Contaminants

Schiff, K.C., J. Diamond. 2009. Identifying barriers to Tiered Aquatic Life Uses (TALU) in southern California. Technical Report 590. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090590

Griffith, J.F., Y. Cao, C.D. McGee, S.B. Weisberg. 2009. Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 223-233. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.15

Griffith, J.F., Y. Cao, C.D. McGee, S.B. Weisberg. 2009. Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality. Water Research 43:4900-4907.

Journal Article20090603Microbial Source Tracking, Microbial Water Quality

Boehm, A.B., N.J. Ashbolt, J.M. Colford, J.r. , L.E. Dunbar, L.E. Fleming, M.A. Gold, J.A. Hansel, P.R. Hunter, A.M. Ichida, C.D. McGee, J.A. Soller, S.B. Weisberg. 2009. A sea change ahead for recreational water quality criteria. Journal of Water and Health 7:9-20.

Journal Article20090621Microbial Water Quality

Maruya, K.A., K.C. Schiff. 2009. The extent and magnitude of sediment contamination in the Southern California Bight. The Geological Society of America 454:399-412.

Journal Article20090591Regional Monitoring, Sediment Quality, Sediment Quality Assessment Frameworks, Southern California Bight Regional Monitoring Program

Noble, R.T., A.D. Blackwood, J.F. Griffith, C.D. McGee, S.B. Weisberg. 2009. Comparison of rapid QPCR-based and culture-based methods for enumeration of Enterococcus sp. and Escherichia coli in recreational waters. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 211-221. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.14

Lyon, G.S., E.D. Stein. 2009. Effluent discharges to the Southern California Bight from industrial facilities in 2005. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 15-29. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.02

Lyon, G.S., E.D. Stein. 2009. How effective has the Clean Water Act been at reducing pollutant mass emissions to the Southern California Bight over the past 35 years?. Environmental Monitoring and Assessment 154:413-426.

Journal Article20090593Regional Monitoring, Southern California Bight Regional Monitoring Program

Brown, J.S., D. Ackerman, E.D. Stein. 2009. Continuous in situ characterization of particulate sizes in urban stormwater: Method testing and refinement. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 183-193. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.12

Ode, P., K.C. Schiff. 2009. Recommendations for the development and maintenance of a reference condition management program (RCMP) to support biological assessment of California. Technical Report 581. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090581Bioassessment

Cao, Y., J.F. Griffith, S.B. Weisberg. 2009. Evaluation of optical brightener photodecay characteristics for detection of human fecal contamination. Water Research 43:2273-2279.

Journal Article20090584Microbial Water Quality

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual. Technical Report 582. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090582Sediment Quality, Sediment Quality Assessment Frameworks

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix A). Technical Report 582.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090582.ASediment Quality, Sediment Quality Assessment Frameworks

Nezlin, N.P., K. Kamer, J. Hyde, E.D. Stein. 2009. Dissolved oxygen dynamics in a eutrophic estuary, Upper Newport Bay, California. Estuarine, Coastal and Shelf Science 82:139-151.

Journal Article20090579Eutrophication, Harmful Algal Blooms

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix B). Technical Report 582.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090582.BSediment Quality, Sediment Quality Assessment Frameworks

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix C). Technical Report 582.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090582.CSediment Quality, Sediment Quality Assessment Frameworks

Bay, S.M., D.J. Greenstein, J.A. Ranasinghe, D.W. Diehl, A.E. Fetscher. 2009. Sediment quality assessment draft technical support manual (Appendix D). Technical Report 582.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090582.DSediment Quality, Sediment Quality Assessment Frameworks

Maruya, K.A., E.Y. Zeng, D. Tsukada, S.M. Bay. 2009. A passive sampler based on solid-phase microextraction for quantifying hydrophobic organic contaminants in sediment pore water. Environmental Toxicology and Chemistry 28:733-740.

Journal Article20090580Sediment Quality

Lao, W., J. Gan. 2009. Doubly tethered tertiary amide linked and ionically bonded diproline chiral stationary phases. Journal of Separation Science 32:2359-2368.

Journal Article20090596

Lao, W., J. Gan. 2009. Evaluation of triproline and tri-a-methylproline chiral stationary phases retention and enantioseparation associated with hydrogen bonding. Journal of Chromatography A 1216:5020-5029.

Journal Article20090676

Fetscher, A.E., M. Sutula, J.C. Callaway, V.T. Parker, M. Vasey, J.N. Collins, W.G. Nelson. 2009. Patterns in vegetation communities of estuarine wetlands in two California regions: Insights from a probabilistic survey. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 127-144. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.09

Stein, E.D., S. Dark, T. Longcore, R. Grossinger, N. Hall, M. Beland. 2009. Historical ecology as a tool for assessing landscape change and wetland restoration priorities. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 145-160. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.10

Ackerman, D., N.P. Nezlin. 2009. Suspended particle dynamics in a southern California urban estuary during the dry season. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 97-108. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.07

Kwon, J.W., K.L. Armbrust, D.E. Vidal-Dorsch, S.M. Bay, K. Xia. 2009. Determination of 17α-ethynylestradiol, carbamazepine, diazepam, simvastatin, and oxybenzone in fish livers. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 291-303. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.20

Kwon, J.-W., K.L. Armbrust, D. Vidal-Dorsch, S.M. Bay, K. Xia. 2009. Determination of 17 alpha-ethynylestradiol, carbamazepine, diazepam, simvastatin, and oxybenzone in fish livers. Journal of AOAC International 92:359-369.

Journal Article20090583Emerging Contaminants

Converse, R.R., A.D. Blackwood, M. Kirs, J.F. Griffith, R.T. Noble. 2009. Rapid qPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. Water Research 43:4828-4837.

Journal Article20090679Microbial Source Tracking, Microbial Water Quality

Solek, C.W., E.D. Stein, M. Sutula. 2009. Demonstration of an integrated watershed assessment using a three-tiered assessment framework. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 109-126. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.08

Reifel, K.M., S.C. Johnson, P.M. DiGiacomo, M.J. Mengel, N.P. Nezlin, J.A. Warrick, B.H. Jones. 2009. Impacts of stormwater runoff in the Southern California Bight: Relationships among plume constituents. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 161-181. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.11

Reifel, K.M., S.C. Johnson, P.M. DiGiacomo, M.J. Mengel, N.P. Nezlin, J.A. Warrick, B.H. Jones. 2009. Impacts of stormwater runoff in the Southern California Bight: Relationships among plume constituents. Continental Shelf Research 29:1821-1835.

Journal Article20090599Runoff Water Quality, Stormwater BMPs

Fetscher, A.E., L. Busse, P.R. Ode. 2009. Standard Operating Procedures for Collecting Stream Algae Samples and Associated Physical Habitat and Chemical Data for Ambient Bioassessments in California. Technical Report 602. California State Water Resources Control Board Surface Water Ambient Monitoring Program (SWAMP). Sacramento, CA.

Technical Report20090602Bioassessment

Boehm, A.B., J.F. Griffith, C.D. McGee, T.A. Edge, H.M. Solo-Gabriele, R. Whitman, Y. Cao, M. Getrich, J.A. Jay, D. Ferguson, K.D. Goodwin, C.M. Lee, M. Madison, S.B. Weisberg. 2009. Fecal indicator bacteria (FIB) enumeration in beach sand: A comparison study of FIB extraction methods in medium to coarse sands. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 249-261. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.17

Boehm, A.B., J.F. Griffith, C.D. McGee, T.A. Edge, H.M. Solo-Gabriele, R. Whitman, Y. Cao, M. Getrich, J.A. Jay, D. Ferguson, K.D. Goodwin, C.M. Lee, M. Madison, S.B. Weisberg. 2009. Fecal indicator bacteria enumeration in beach sand: A comparison study of FIB extraction methods in medium to coarse sands. Journal of Applied Microbiology 107:1740-1750.

Journal Article20090628Microbial Water Quality

Ranasinghe, J.A., K.C. Schiff, D.E. Montagne, T.K. Mikel, D.B. Cadien, R.G. Velarde, C.A. Brantley. 2009. Benthic macrofaunal community condition in the Southern California Bight, 1994-2003. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 31-42. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.03

Stein, E.D., J.S. Brown. 2009. Effects of post-fire runoff on surface water quality: Development of a southern California regional monitoring program with management questions and implementation recommendations. Technical Report 598. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090598Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Stein, E.D., J.S. Brown. 2009. Effects of post-fire runoff on surface water quality: Development of a southern California regional monitoring program with management questions and implementation recommendations (Appendix A). Technical Report 598.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20090598.ARegional Monitoring, Runoff Water Quality, Stormwater BMPs

Lea, R.N., M.J. Allen, W. Power. 2009. Records of the Pacific Bearded Brotula, Brotula clarkae, from Southern California. Bulletin of the Southern California Academy of Sciences 108:163-167.

Journal Article20090604

California Ocean Science Trust and National Water Research Institute and San Francisco Estuary Institute and Southern California Coastal Water Research Project. 2009. Workshop Report - Managing contaminants of emerging concern in California: Developing processes for prioritizing, monitoring, and determining thresholds of concern. Technical Report 600. National Water Research Institute. Fountain Valley, CA.

Technical Report20090600Emerging Contaminants

Converse, R.R., A.D. Blackwood, M. Kirs, R.T. Noble, J.F. Griffith. 2009. Rapid QPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 235-247. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.16

Sutula, M., K. Kamer, J. Cable. 2009. The importance of benthic nutrient flux in supporting eutrophication in an intermittently tidal coastal lagoon. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 75-95. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.06

Stein, E.D., D.B. Cadien. 2009. Ecosystem response to regulatory and management actions: The southern California experience in long-term monitoring. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 1-14. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.01

Stein, E.D., D.B. Cadien. 2009. Ecosystem response to regulatory and management actions: The southern California experience in long-term monitoring. Marine Pollution Bulletin 59:91-100.

Journal Article20090594Regional Monitoring

Stein, E.D., A.E. Fetscher, R.P. Clark, A. Wiskind, J.L. Grenier, M. Sutula, J.N. Collins, C. Grosso. 2009. Validation of a wetland rapid assessment method: Use of EPA's Level 1-2-3 Framework for method testing and refinement. Wetlands 29:648-665.

Journal Article20090588Bioassessment

Baker, M.E., B. Ruggeri, L.J. Sprague, C. Eckhardt-Ludka, J. Lapira, I. Wick, L. Soverchia, M. Ubaldi, A.M. Polzonetti-Magni, D. Vidal-Dorsch, M. Bay, J.R. Gullye, J.A. Reyes, K.M. Kelley, D. Schlenk, E.C. Breen, R. Sasik, G. Hardiman. 2009. Analysis of endocrine disruption in southern California coastal fish using an aquatic multispecies microarray. Environmental Health Perspectives 117:223-230.

Journal Article20090673Emerging Contaminants

Mazor, R.D., A.H. Purcell, V.H. Resh. 2009. Long-term variability in bioassessments: A twenty-year study from two northern California streams. Environmental Management 43:1269-1286.

Journal Article20090586Bioassessment

Ackerman, D., E.D. Stein, K.J. Ritter. 2009. Evaluating stormwater sampling approaches using a dynamic watershed model. in: K.C. Schiff, K. Miller (eds.), Southern California Coastal Water Research Project 2009 Annual Report pp. 195-210. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20092009.13

Tiefenthaler, L.L., E.D. Stein, G.S. Lyon. 2009. Fecal indicator bacteria (FIB) levels during dry weather from southern California reference streams. Environmental Monitoring and Assessment 155:477-492.

Journal Article20090595Microbial Water Quality

Ranasinghe, J.A., S.B. Weisberg, R.W. Smith, D.E. Montagne, B. Thompson, J.M. Oakden, D.D. Huff, D.B. Cadien, R.G. Velarde, K.J. Ritter. 2009. Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats. Marine Pollution Bulletin 59:5-13.

Journal Article20090577Bioassessment, Indices Of Biotic Integrity, Sediment Quality

Pulster, E.L., K.L. Smalling, E. Zolman, L. Schwacke, K.A. Maruya. 2009. Persistent organochlorine pollutants and toxaphene congener profiles in bottlenose dolphins (Tursiops truncates) frequenting the Turtle/Brunswick River Estuary, Georgia, USA. Environmental Toxicology and Chemistry 28:1390-1399.

Journal Article20090592Emerging Contaminants

Elsbury, K.E., A. Paytan, N.E. Ostrom, C. Kendall, M.B. Young, K. McLaughlin, M.E. Rollog, S. Watson. 2009. Using oxygen isotopes of phosphate to trace phosphorus sources and cycling in Lake Erie. Environmental Science and Technology 43:3108-3114.

Journal Article20090585Eutrophication

Borja, A., A. Ranasinghe, S.B. Weisberg. 2009. Assessing ecological integrity in marine waters, using multiple indices and ecosystem components: Challenges for the future. Marine Pollution Bulletin 59:1-4.

Journal Article20090578Bioassessment, Indices Of Biotic Integrity

Mika, K.B., G. Imamura, C. Chang, V. Conway, G. Fernandez, J.F. Griffith, R.A. Kampalath, C.M. Lee, C.-C. Lin, R. Moreno, S. Thompson, R.L. Whitman, J.A. Jay. 2009. Pilot- and bench-scale testing of faecal indicator bacteria survival in marine beach sand near point sources. Journal of Apllied Microbiology 107:72-84.

Journal Article20090587Microbial Water Quality

Barnett, A.M., S.M. Bay, K.J. Ritter, S.L. Moore, S.B. Weisberg. 2008. Sediment quality in California bays and estuaries. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 187-198. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.15

Sutula, M., J.N. Collins, A. Wiskind, C. Roberts, C. Solek, S. Pearce, R. Clark, A.E. Fetscher, C. Grosso, K. O'Connor, A. Robinson, C. Clark, K. Rey, S. Morrissette, A. Eicher, R. Pasquinelli, M. May, K. Ritter. 2008. Status of perennial estuarine wetlands in the state of California: Final Report to the Surface Water Ambient Monitoring Program and State Water Resources Control Board. Technical Report 571. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080571

Ode, P.R., C.P. Hawkins, R.D. Mazor. 2008. Comparability of biological assessments derived from predictive models and multimetric indices of increasing geographic scope. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 123-143. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.10

Ode, P.R., C.P. Hawkins, R.D. Mazor. 2008. Comparability of biological assessments derived from predictive models and multimetric indices of increasing geographic scope. Journal of the North American Benthological Society 27:967-985.

Journal Article20080575Bioassessment, Indices Of Biotic Integrity

Ranasinghe, J.A., K.I. Welch, P.N. Slattery, D.E. Montagne, D.D. Huff, H. Lee II, J.L. Hyland, B. Thompson, S.B. Weisberg, J.M. Oakden, D.B. Cadien, R.G. Velarde. 2008. Habitat related benthic macrofaunal assemblages of bays and estuaries of the western United States. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 199-210. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.16

Stein, E.D., L.L. Tiefenthaler, K.C. Schiff. 2008. Comparison of stormwater pollutant loading by land use type. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 15-27. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.02

Bledsoe, B., R. Hawley, E.D. Stein. 2008. Stream channel classification and mapping systems: implications for assessing susceptibility to hydromodification effects in southern California. Technical Report 562. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080562Ecohydrology

Allen, M.J. 2008. Bathymetric responses in functional structure of southern California demersal fish communities to Pacific Decadal Oscillation regimes and an El Niño. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 211-228. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.17

Fetscher, A.E., K. McLaughlin. 2008. Incorporating bioassessment using freshwater algae into California's Surface Water Ambient Monitoring Program (SWAMP). Technical Report 563. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080563Bioassessment

Ackerman, D., E.D. Stein. 2008. Estimating the variability and confidence of land use and imperviousness relationships at a regional scale. Journal of the American Water Resources Association 44:996-1008.

Journal Article20080566Ecohydrology

Ackerman, D., E.D. Stein. 2008. Evaluating the effectiveness of best management practices using dynamic modeling. Journal of Environmental Engineering 134:628-639.

Journal Article20080568Runoff Water Quality, Stormwater BMPs

Baker, M.E., B. Ruggeri, J. Sprague, C. Eckhardt, J. Lapira, I. Wick, L. Soverchia, M. Ubaldi, A.M. Polzonetti-Magni, D.E. Vidal-Dorsch, S.M. Bay, J.R. Gully, J.A. Reyes, K.M. Kelley, D. Schlenk, E.C. Breen, R. Sasik, G. Hardiman. 2008. Analysis of endocrine disruption in southern California coastal fish using an aquatic multi-species microarray. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 65-78. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.06

Sabin, L.D., K.C. Schiff. 2008. Dry atmospheric deposition rates of metals along a coastal transect in southern California. Atmospheric Environment 42:6606-6613.

Journal Article20080570Sediment Quality

Sutula, M., J.N. Collins, R. Clark, C. Roberts, E.D. Stein, C. Grosso, A. Wiskind, C. Solek, M. May, K. O'Connor, E. Fetscher, J.L. Grenier, S. Pearce, A. Robinson, C. Clark, K. Rey, S. Morrissette, A. Eicher, R. Pasquinelli, K. Ritter. 2008. California's Wetland Demonstration Program Pilot - A Final Project Report to the California Resources Agency. Technical Report 572. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080572

Sabin, L.D., K.A. Maruya, W. Lao, D.W. Diehl, D. Tsukada, K.D. Stolzenbach, K.C. Schiff. 2008. Exchange of polycyclic aromatic hydrocarbons between the atmosphere, water, and sediment in southern California coastal embayments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 51-64. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.05

Lyon, G.S., E.D. Stein. 2008. Effluent discharges to the Southern California Bight from small municipal wastewater treatment facilities in 2005. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 1-14. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.01

Sutula, M., J.N. Collins, R. Clark, C. Roberts, E.D. Stein, C. Grosso, A. Wiskind, C. Solek, M. May, K. O'Connor, E. Fetscher, J.L. Grenier, S. Pearce, A. Robinson, C. Clark, K. Rey, S. Morrissette, A. Eicher, R. Pasquinelli, K. Ritter. 2008. California's Wetland Demonstration Program Pilot - A Final Project Report to the California Resources Agency (Appendix 1). Technical Report 572.1. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080572.A

Sutula, M., J.N. Collins, R. Clark, C. Roberts, E.D. Stein, C. Grosso, A. Wiskind, C. Solek, M. May, K. O'Connor, E. Fetscher, J.L. Grenier, S. Pearce, A. Robinson, C. Clark, K. Rey, S. Morrissette, A. Eicher, R. Pasquinelli, K. Ritter. 2008. California's Wetland Demonstration Program Pilot - A Final Project Report to the California Resources Agency (Appendix 2). Technical Report 572.2. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080572.B

Tiefenthaler, L.L., E.D. Stein, K.C. Schiff. 2008. Origins and mechanisms of watershed and land use based sources of fecal indicator bacteria in urban stormwater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 153-161. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.12

Tiefenthaler, L.L., E.D. Stein, K.C. Schiff. 2008. Watershed and land use-based sources of trace metals in urban stormwater. Environmental Toxicology and Chemistry 27:277-287.

Journal Article20080556Runoff Water Quality, Stormwater BMPs

Bay, S.M., S.B. Weisberg. 2008. A framework for interpreting sediment quality triad data. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 175-185. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.14

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Carlsbad Hydrologic Unit. Technical Report 527.04. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.04Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Los Penasquitos Hydrologic Unit. Technical Report 527.06. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.06Bioassessment

Cao, Y., J.F. Griffith, S.B. Weisberg. 2008. Evaluation of optical brightener photodecay characteristics for the detection of human fecal contamination. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 145-152. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.11

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Otay Hydrologic Unit. Technical Report 527.1. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.10Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Pueblo San Diego Hydrologic Unit. Technical Report 527.08. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.08Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the San Diego River Hydrologic Unit. Technical Report 527.07. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.07Bioassessment

Nezlin, N.P., K. Kamer, J. Hyde, E.D. Stein. 2008. Dissolved oxygen dynamics in a eutrophic estuary, Upper Newport Bay, California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 229-245. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.18

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the San Dieguito Hydrologic Unit. Technical Report 527.05. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.05Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the San Juan Hydrologic Unit. Technical Report 527.01. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.01Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the San Luis Rey Hydrologic Unit. Technical Report 527.03. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.03Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Santa Margarita Hydrologic Unit. Technical Report 527.02. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.02Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Sweetwater Hydrologic Unit. Technical Report 527.09. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.09Bioassessment

Ritter, K.J., S.M. Bay, R.W. Smith, D.E. Vidal-Dorsch, L.J. Field. 2008. Development and evaluation of sediment quality guidelines based on benthic macrofauna responses. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 91-105. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.08

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) Report on the Tijuana Hydrologic Unit. Technical Report 527.11. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527.11Bioassessment

Mazor, R.D., K.C. Schiff. 2008. Surface Water Ambient Monitoring Program (SWAMP) synthesis report on stream assessment in the San Diego Region. Technical Report 527. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080527Bioassessment

Bay, S.M., K.J. Ritter, D.E. Vidal-Dorsch, L.J. Field. 2008. Comparison of national and regional sediment quality guidelines for classifying sediment toxicity in California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 79-90. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.07

Yoon, V.K., E.D. Stein. 2008. Natural catchments as sources of background levels of storm-water metals, nutrients, and solids. Journal of Environmental Engineering 134:961-973.

Journal Article20080576Runoff Water Quality, Stormwater BMPs

Kayhanian, M., C. Stransky, S.M. Bay, S.-L. Lau, M.K. Stenstrom. 2008. Toxicity of urban highway runoff with respect to storm duration. Science of the Total Environment 389:386-406.

Journal Article20080564Runoff Water Quality, Stormwater BMPs

Maruya, K.A., E.Y. Zeng, D. Tsukada, S.M. Bay. 2008. A passive sampler based on solid phase microextraction (SPME) for quantifying hydrophobic organic contaminants in sediment porewater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 39-49. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.04

Sutula, M., J.S. Brown, E. Fetscher, M. Mattson, S. Madon, G. Santolo, E. Byron, C. Stransky. 2008. Habitat value and treatment effectiveness of freshwater urban wetlands. Technical Report 559. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080559Runoff Water Quality, Stormwater BMPs

Lao, W., J. Gan. 2008. Characterization of column hold-up volume with static and dynamic methods on an immobilized polysaccharide-based chiral stationary phase. Chromatographia 67:3-7.

Journal Article20080675

Weisberg, S.B., B. Thompson, J.A. Ranasinghe, D.E. Montagne, D.B. Cadien, D.M. Dauer, D. Diener, J. Oliver, D.J. Reish, R.G. Velarde, J.Q. Word. 2008. The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. Ecological Indicators 8:389-394.

Journal Article20080557Bioassessment, Sediment Quality

Stein, E.D., V.K. Yoon. 2008. Dry weather flow contribution of metals, nutrients, and solids from natural catchments. Water, Air, and Soil Pollution 190:183-195.

Journal Article20080560Runoff Water Quality, Stormwater BMPs

Stein, E.D., B. Bernstein. 2008. Integrating probabalistic and targeted compliance monitoring for comprehensive watershed assessment. Environmental Monitoring and Assessment 144:117-129.

Journal Article20080569

Greenstein, D.J., S.M. Bay, B. Anderson, G.T. Chandler, J.D. Farrar, C. Keppler, B. Phillips, A. Ringwood, D. Young. 2008. Comparison of methods for evaluating acute and chronic toxicity in marine sediments. Environmental Toxicology and Chemistry 27:933-944.

Journal Article20080558Sediment Quality

California Integrated Water Quality System (CIWQS) Review Panel. 2008. Final report of the California Integrated Water Quality System (CIWQS) Review Panel. Technical Report 561. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080561

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005. Technical Report 574. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574Sediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix A). Technical Report 574.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.ASediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix B). Technical Report 574.B. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.BSediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix C). Technical Report 574.C. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.CSediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix D). Technical Report 574.D. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.DSediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix E). Technical Report 574.E. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.ESediment Quality

Allen, M.J., E.T. Jarvis, V. Raco-Rands, G. Lyon, J.A. Reyes, D.M. Petschauer. 2008. Extent of fishing and fish consumption by fishers in Ventura and Los Angeles County watersheds in 2005 (Appendix F). Technical Report 574.F. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080574.FSediment Quality

Yang, Z.Y., K.A. Maruya, D.J. Greenstein, D. Tsukada, E.Y. Zeng. 2008. Experimental verification of a model describing solid phase microextraction (SPME) of freely dissolved organic pollutants in sediment porewater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 29-38. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.03

Yang, Z.Y., K.A. Maruya, D.J. Greenstein, D. Tsukada, E.Y. Zeng. 2008. Experimental verification of a model describing solid phase microextraction (SPME) of freely dissolved organic pollutants in sediment porewater. Chemosphere 72:1435-1440.

Journal Article20080567Sediment Quality

Stein, E.D., A.E. Fetscher, R.P. Clark, A. Wiskind, J.L. Grenier, M. Sutula, J.N. Collins, C. Grosso. 2008. Validation of a Wetlands Rapid Assessment Method: Application of the EPA's Level 1-2-3 Framework for method testing and refinement. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 247-269. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.19

Harmful Algal Bloom Monitoring and Alert Program (HABMAP) Working Group. 2008. The regional workshop for Harmful Algal Blooms (HABs) in California coastal waters. Technical Report 565. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080565Eutrophication, Harmful Algal Blooms

Tiefenthaler, L.L., E.D. Stein, G.S. Lyon. 2008. Fecal Indicator Bacteria (FIB) levels during dry weather from southern California reference streams. Technical Report 542. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20080542Microbial Water Quality

Tiefenthaler, L.L., E.D. Stein, G.S. Lyon. 2008. Fecal indicator bacteria levels during dry weather in southern California reference streams. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 163-174. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.13

Ranasinghe, J.A., S.B. Weisberg, R.W. Smith, D.E. Montagne, B. Thompson, J.M. Oakden, D.D. Huff, D.B. Cadien, R.G. Velarde, K.J. Ritter. 2008. Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 107-121. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.09

Nezlin, N.P., P.M. DiGiacomo, D.W. Diehl, B.H. Jones, S.C. Johnson, M.J. Mengel, K.M. Reifel, J.A. Warrick, M. Wang. 2008. Stormwater plume detection by MODIS imagery in the southern California coastal ocean. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 289-304. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.21

Nezlin, N.P., P.M. DiGiacomo, D.W. Diehl, B.H. Jones, S.C. Johnson, M.J. Mengel, K.M. Reifel, J.A. Warrick, M. Wang. 2008. Stormwater plume detection by MODIS imagery in the southern California coastal ocean. Estuarine, Coastal and Shelf Science 80:141-152.

Journal Article20080573Runoff Water Quality, Stormwater BMPs

Rose, J.B., E.A. Dreelin, S.B. Weisberg. 2008. Transboundary Monitoring of International Waters: Critical Questions for Microbial Water Quality. in: J.B. Rose, E.A. Dreelin (eds.), Effective Cross-Border Monitoring Systems for Waterborne Microbial Pathogens: A Plan for Action pp. 1-22. IWA Publishing. London, UK.

Book Chapter20080554Microbial Risk Assessment, Microbial Water Quality, Regional Monitoring

Brown, J.S., M. Sutula, C. Stransky, J. Rudolph. 2008. Sediment contaminant chemistry and toxicity of freshwater urban wetlands. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2008 Annual Report pp. 271-287. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20082008.20

Nezlin, N.P., P.M. DiGiacomo, B.H. Jones, K.M. Reifel, J.A. Warrick, S.C. Johnson, M.J. Mengel. 2007. MODIS imagery as a tool for synoptic water quality assessments in the southern California coastal ocean. Coastal Ocean Remote Sensing pp. 66800T-1-66800T-11. Society of Photo-Optical Instrumentation Engineers. Bellingham, WA.

Book Chapter20070548Runoff Water Quality, Sediment Quality

Barnett, A.M., S.M. Bay, K.J. Ritter, S.L. Moore, S.B. Weisberg. 2007. Sediment quality in California bays and estuaries. Technical Report 522. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070522Sediment Quality, Sediment Quality Assessment Frameworks

Yang, Z.Y., D.J. Greenstein, E.Y. Zeng, K.A. Maruya. 2007. Determination of poly(dimethyl)siloxanewater partition coefficients for selected hydrophobic organic chemicals using 14C-labeled analogs. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 269-279. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.20

Stein, E.D., D. Ackerman. 2007. Dry weather water quality loadings in arid, urban watersheds of the Los Angeles basin, California, USA. Journal of the American Water Resources Association 43:398-413.

Journal Article20070508Runoff Water Quality, Stormwater BMPs

Yang, Z.Y., D.J. Greenstein, E.Y. Zeng, K.A. Maruya. 2007. Determination of poly(dimethyl)siloxane-water partition coefficients for selected hydrophobic organic chemicals using 14C-labeled analogs. Journal of Chromatography A 1148:23-30.

Journal Article20070515Sediment Quality

Stein, E.D., D. Ackerman. 2007. Hydrodynamic modeling of the San Gabriel River estuary. Technical Report 511. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070511Ecohydrology

Colford Jr, J.M., T.J. Wade, K.C. Schiff, C.C. Wright, J.F. Griffith, S.K. Sandhu, S. Burns, M. Sobsey, G. Lovelace, S.B. Weisberg. 2007. Water quality indicators and the risk of illness at beaches with nonpoint sources of fecal contamination. Epidemiology 18:27-35.

Journal Article20070498Microbial Risk Assessment, Microbial Water Quality

Griffith, J.F., D. Moore, C. McGee, S.B. Weisberg. 2007. Beta testing of rapid methods for measuring beach water quality. Technical Report 506. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070506Microbial Water Quality

Jarvis, E., K.C. Schiff, L. Sabin, M.J. Allen. 2007. Chlorinated hydrocarbons in pelagic forage fishes and squid of the Southern California Bight. Environmental Toxicology and Chemistry 26:2290-2298.

Journal Article20070532Regional Monitoring, Southern California Bight Regional Monitoring Program

Jarvis, E., K.C. Schiff, L. Sabin, M.J. Allen. 2007. Chlorinated hydrocarbons in pelagic forage fishes and squid of the Southern California Bight, USA. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 245-258. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.18

Stein, E.D., L.L. Tiefenthaler, K.C. Schiff. 2007. Sources, patterns and mechanisms of storm water pollutant loading from watersheds and land uses of the greater Los Angeles area, California, USA. Technical Report 510. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070510Ecohydrology, Runoff Water Quality, Stormwater BMPs

Ackerman, D., E.D. Stein. 2007. Estimating the variability and confidence of land use and imperviousness relationships at a regional scale. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 157-170. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.12

Ackerman, D., E.D. Stein. 2007. Evaluating the effectiveness of Best Management Practices using dynamic modeling. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 183-196. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.14

Nezlin, N.P., S.B. Weisberg, D.W. Diehl. 2007. Relative availability of satellite imagery and ship-based sampling for assessment of stormwater runoff plumes in coastal southern California. Estuarine, Coastal and Shelf Science 71:250-258.

Journal Article20070497Runoff Water Quality, Stormwater BMPs

Sabin, L.D., K.C. Schiff. 2007. Metal dry deposition rates along a coastal transect in southern California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 61-71. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.05

Sabin, L.D., K.C. Schiff. 2007. Metal dry deposition rates along a coastal transect in southern California. Technical Report 509. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070509Sediment Quality

Lyon, G.S., E.D. Stein. 2007. How effective has the Clean Water Act been at reducing pollutant mass emissions to the Southern California Bight over the past 35 years?. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 1-12. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.01

Tiefenthaler, L.L., E.D. Stein, K.C. Schiff. 2007. Watershed and land use-based sources of trace metals in urban stormwater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 13-29. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.02

Bay, S.M., W. Berry, P. Chapman, R. Fairey, T. Gries, E. Long, D. MacDonald, S.B. Weisberg. 2007. Evaluating consistency of best professional judgment in the application of a multiple lines of evidence sediment quality triad. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 259-267. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.19

Bay, S.M., W. Berry, P.M. Chapman, R. Fairey, T. Gries, E. Long, D. MacDonald, S.B. Weisberg. 2007. Evaluating consistency of best professional judgment in the application of a multiple lines of evidence sediment quality triad. Integrated Environmental Assessment and Management 3:491-497.

Journal Article20070525Sediment Quality, Sediment Quality Assessment Frameworks

Gosset, R., K.C. Schiff. 2007. Stormwater Monitoring Coalition laboratory guidance document (Second Edition). Technical Report 521. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070521Regional Monitoring, Southern California Stormwater Monitoring Coalition

Warrick, J.A., P.M. DiGiacomo, S.B. Weisberg, N.P. Nezlin, M.J. Mengel, B.H. Jones, J.C. Ohlmann, L. Washburn, E.J. Terrill, K.L. Farnsworth. 2007. River plume patterns and dynamics within the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 215-236. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.16

Warrick, J.A., P.M. DiGiacomo, S.B. Weisberg, N.P. Nezlin, M. Mengel, B.H. Jones, J.C. Ohlmann, L. Washburn, E.J. Terrill, K.L. Farnsworth. 2007. River plume patterns and dynamics within the Southern California Bight. Continental Shelf Research 27:2427-2448.

Journal Article20070531Runoff Water Quality, Stormwater BMPs

Nezlin, N.P., K. Kamer, E.D. Stein. 2007. Application of color infrared aerial photography to assess macroalgal distribution in an eutrophic estuary, upper Newport Bay, California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 139-155. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.11

Nezlin, N.P., K. Kamer, E.D. Stein. 2007. Application of color infrared aerial photography to assess macroalgal distribution in an eutrophic estuary, upper Newport Bay, California. Estuaries and Coasts 30:855-868.

Journal Article20070534Eutrophication, Harmful Algal Blooms

Ranasinghe, J.A., A.M. Barnett, K.C. Schiff, D.E. Montagne, C. Brantley, C. Beegan, D.B. Cadien, C. Cash, G.B. Deets, D.R. Diener, T.K. Mikel, R.W. Smith, R.G. Velarde, S.D. Watts, S.B. Weisberg. 2007. Southern California Bight 2003 Regional Monitoring Program: III. Benthic Macrofauna. Technical Report 529. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070529Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Yoon, V.K., E.D. Stein. 2007. Contribution of natural catchments to levels of metals, nutrients, and solids in stormwater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 45-59. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.04

Kayhanian, M., C. Stransky, S.M. Bay, S. Lau, M.K. Stenstrom. 2007. Toxicity of urban highway runoff with respect to storm duration. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 109-128. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.09

Sapozhnikova, Y., E. Wirth, K.C. Schiff, J.S. Brown, M. Fulton. 2007. Antifouling pesticides in the coastal waters of southern California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 93-101. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.07

Hartel, P.G., S.P. Myoda, K.J. Ritter, R.L. Kuntz, K. Rodgers, J.A. Entry, S.A. Ver Wey, E.C. Schr, J. Calle, M. Lacourt, J.E. Thies, J.P. Reilly, J.J. Fuhrmann. 2007. Geographic sharing of ribotype patterns in Enterococcus faecalis for bacterial source tracking. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 299-309. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.22

Sapozhnikova, Y., E. Wirth, K.C. Schiff, J.S. Brown, M. Fulton. 2007. Antifouling pesticides in the coastal waters of southern California. Marine Pollution Bulletin 54:1972-1978.

Journal Article20070533Emerging Contaminants

Weisberg, S.B., B. Thompson, J.A. Ranasinghe, D.E. Montagne, D.B. Cadien, D.M. Dauer, D. Diener, J. Oliver, D.J. Reish, R.G. Velarde, J.Q. Word. 2007. The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. Technical Report 523. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070523Bioassessment, Sediment Quality

Sutula, M., C. Creager, G. Wortham. 2007. Technical approach to develop nutrient numeric endpoints for California estuaries. Technical Report 516. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070516Eutrophication, Harmful Algal Blooms

Schiff, K.C., B. Bax, P. Markle, T. Fleming, J. Newman. 2007. Wet and dry weather toxicity in the San Gabriel River. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 129-138. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.10

Schiff, K.C., B. Bax, P. Markle, T. Fleming, J. Newman. 2007. Wet and dry weather toxicity in the San Gabriel River. Bulletin of the Southern California Academy of Sciences 160:179-192.

Journal Article20070541Runoff Water Quality, Stormwater BMPs

Rosenberger, K.J., J. Xu, E.D. Stein, M.A. Noble, A.L. Gartner. 2007. Circulation and physical processes within the San Gabriel River estuary during summer 2005. Technical Report 501. U.S. Geological Survey. Reston, VA.

Technical Report20070501Ecohydrology

Stein, E.D., V.K. Yoon. 2007. Assessment of water quality concentrations and loads from natural landscapes. Technical Report 500. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070500Ecohydrology

Stein, E.D., V.K. Yoon. 2007. Dry-weather flow contribution of metals, nutrients, and solids from natural catchments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 31-44. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.03

Stein, E.D., B. Bernstein. 2007. Integrating probabalistic and targeted compliance monitoring for comprehensive watershed assessment. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 171-181. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.13

Stein, E.D., S. Dark, T. Longcore, N. Hall, M. Beland, R. Grossinger, J. Casanova, M. Sutula. 2007. Historical ecology and landscape change of the San Gabriel River and floodplain. Technical Report 499. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070499

Stein, E.D., S. Dark, T. Longcore, N. Hall, M. Beland, R. Grossinger, J. Casanova, M. Sutula. 2007. Historical ecology and landscape change of the San Gabriel River and floodplain (Appendices A-C). Technical Report 499.A. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070499.A

McLaughlin, K., M. Sutula. 2007. Developing nutrient numeric endpoints and TMDL tools for California estuaries: An implementation plan. Technical Report 540. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070540Eutrophication, Harmful Algal Blooms

California Integrated Water Quality System (CIWQS) Review Panel. 2007. Preliminary report of the California Integrated Water Quality System (CIWQS) Review Panel. Technical Report 517. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070517

Bay, S.M., D.J. Greenstein, D. Young. 2007. Evaluation of methods for measuring sediment toxicity in California bays and estuaries. Technical Report 503. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070503Sediment Quality

Schiff, K.C., J.S. Brown, D.W. Diehl, D.J. Greenstein. 2007. Extent and magnitude of copper contamination in marinas of the San Diego region, California, USA. Marine Pollution Bulletin 54:322-328.

Journal Article20070504Sediment Quality

Southern California Coastal Water Research Project. 2007. Model monitoring for small publicly-owned treatment works in the San Diego region. Technical Report 518. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070518Sediment Quality

Peng, J., E.Y. Zeng. 2007. An integrated geochemical and hydrodynamic model for tidal coastal environments. Marine Chemistry 103:15-29.

Journal Article20070496Sediment Quality

Peng, J., K.A. Maruya, K.C. Schiff, D. Tsukada, D.W. Diehl, W. Lao, J. Gan, E. Zeng. 2007. Organochlorine pesticides and other trace organic contaminants in the Upper Newport Bay watershed. Technical Report 512. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070512Regional Monitoring, Runoff Water Quality, Southern California Bight Regional Monitoring Program, Stormwater BMPs

Clarke, L.B., D. Ackerman, J. Largier. 2007. Dye dispersion in the surf zone: measurements and simple models. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 73-92. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.06

Clarke, L.B., D. Ackerman, J. Largier. 2007. Dye dispersion in the surf zone: measurements and simple models. Continental Shelf Research 27:650-669.

Journal Article20070507Microbial Water Quality

Schnetzer, A., P.E. Miller, R.A. Schaffner, B.A. Stauffer, B.H. Jones, S.B. Weisberg, P.M. DiGiacomo, W.M. Berelson, D.A. Caron. 2007. Blooms of Pseudo-nitzschia and domoic acid in the San Pedro Channel and Los Angeles Harbor areas of the Southern California Bight, 2003-2004. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 197-213. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.15

Schnetzer, A., P.E. Miller, R.A. Schaffner, B.A. Stauffer, B.H. Jones, S.B. Weisberg, P.M. DiGiacomo, W.M. Berelson, D.A. Caron. 2007. Blooms of Pseudo-nitzschia and domoic acid in the San Pedro Channel and Los Angeles Harbor areas of the Southern California Bight, 2003-2004. Harmful Algae 6:372-387.

Journal Article20070514Eutrophication, Harmful Algal Blooms

Ritter, K.J., M. Leecaster. 2007. Multi-lag cluster designs for estimating the semivariogram for sediments affected by effluent discharges offshore in San Diego. Environmental and Ecological Statistics 14:41-53.

Journal Article20070530Sediment Quality

Stormwater Monitoring Coalition Bioassessment Working Group. 2007. Regional monitoring of Southern California's coastal watersheds. Technical Report 539. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070539Regional Monitoring, Southern California Stormwater Monitoring Coalition

Schiff, K.C., S. Carter. 2007. Monitoring and modeling of Chollas, Paleta, and Switzer Creeks. Technical Report 513. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070513Runoff Water Quality, Stormwater BMPs

Schiff, K.C., D. Ackerman, E. Strecker, M. Leisenring. 2007. Concept development: design storm for water quality in the Los Angeles region. Technical Report 520. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070520Runoff Water Quality, Stormwater BMPs

Allen, M.J., T. Mikel, D. Cadien, J.E. Kalman, E.T. Jarvis, K.C. Schiff, D.W. Diehl, S.L. Moore, S. Walther, G. Deets, C. Cash, S. Watts, D.J. Pondella II, V. Raco-Rands, C. Thomas, R. Gartman, L. Sabin, W. Power, A.K. Groce, J.L. Armstrong. 2007. Southern California Bight 2003 Regional Monitoring Program: IV. Demersal Fishes and Megabenthic Invertebrates. Technical Report 505. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070505Regional Monitoring, Southern California Bight Regional Monitoring Program

Ranasinghe, J.A., S.B. Weisberg, R.W. Smith, D.E. Montagne, B. Thompson, J.M. Oakden, D.D. Huff, D.B. Cadien, R.G. Velarde, K.J. Ritter. 2007. Evaluation of five indicators of benthic community condition in two California bay and estuary habitats. Technical Report 524. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070524Bioassessment, Sediment Quality

Weisberg, S.B., R.T. Noble, J.F. Griffith. 2007. Microbial Indicators of Marine Recreational Water Quality. in: C.J. Hurst, R.L. Crawford, A.L. Mills, J.L. Garland, L.D. Stetzenbach, D.A. Lipson (eds.), Manual of Environmental Microbiology pp. 280-289. ASM Press. Washington, D.C..

Book Chapter20070552Microbial Risk Assessment, Microbial Source Tracking, Microbial Water Quality

Griffith, J.F., K.C. Schiff, S.B. Weisberg, C.D. McGee, C. Clifton. 2007. Efficacy of shallow water sampling to determine exposure of surfers to indicator bacteria at marine beaches. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 237-244. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.17

Weisberg, S.B. 2007. A management context for the statistical design of recreational contact water quality monitoring programs. in: L.J. Wymer (ed.), Statistical Framework for Recreational Water Quality Criteria and Monitoring pp. 13-18. John Wiley & Sons, Ltd. West Sussex, England.

Book Chapter20070553.AMicrobial Risk Assessment, Microbial Water Quality

Griffith, J.F., K.C. Schiff, S.B. Weisberg, C. McGee, C. Clifton. 2007. Southern California Bight 2003 Regional Monitoring Program: VI. Shoreline Microbiology. Technical Report 526. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070526Microbial Water Quality, Regional Monitoring, Southern California Bight Regional Monitoring Program

Boehm, A.B., R.L. Whitman, M.B. Nevers, D. Hou, S.B. Weisberg. 2007. Nowcasting recreational water quality. in: L.J. Wymer (ed.), Statistical Framework for Recreational Water Quality Criteria and Monitoring pp. 179-210. John Wiley & Sons, Ltd. West Sussex, England.

Book Chapter20070553.BMicrobial Risk Assessment, Microbial Water Quality

Hartel, P.G., C. Hagedorn, J.L. McDonald, J.A. Fisher, M.A. Saluta, J.W. Dickerson Jr, L.C. Gentit, S.L. Smith, N.S. Mantripragada, K.J. Ritter, C.N. Belcher. 2007. Exposing water samples to ultraviolet light improves fluorometry for detecting human fecal contamination. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 281-298. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.21

Feng, Y., P.G. Hartel, J.A. Fisher, K. Rodgers, B. Liu, B. Liu, K.J. Ritter. 2007. Differences in survival among Enterococcus faecalis subspecies in two freshwater creek sediments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2007 Annual Report pp. 103-107. Southern California Coastal Water Research Project. Costa Mesa, CA.

Annual Report20072007.08

Stein, E.D., M. Sutula, R. Clark, A. Wiskind, J. Collins. 2007. Improving monitoring and assessment of wetland and riparian areas in California through implementation of a Level 1, 2, 3 framework. Technical Report 555. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070555

Nezlin, N.P., P.M. DiGiacomo, S.B. Weisberg, D.W. Diehl, J.A. Warrick, M.J. Mengel, B.H. Jones, K.M. Reifel, S.C. Johnson, J.C. Ohlmann, L. Washburn, E.J. Terrill. 2007. Southern California Bight 2003 Regional Monitoring Program: V. Water Quality. Technical Report 528. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070528Eutrophication, Harmful Algal Blooms, Regional Monitoring, Southern California Bight Regional Monitoring Program

Bight '03 Steering Committee. 2007. Southern California Bight 2003 Regional Monitoring Program: Executive Summary. Technical Report 538. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20070538Regional Monitoring, Southern California Bight Regional Monitoring Program

Boehm, A.B., S.B. Weisberg. 2006. Tidal forcing of enterococci at marine recreational beaches at fortnightly and semi-diurnal frequencies. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 263-275. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.20

Colford Jr, J.M., T.J. Wade, K.C. Schiff, C.C. Wright, J.F. Griffith, S.K. Sandhu, S. Burns, J. Hayes, M. Sobsey, G. Lovelace, S.B. Weisberg. 2006. Water quality indicators and the risk of illness in non-point source impacted recreational waters. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 141-153. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.11

Collis, H., J. Cable, M. Sutula. 2006. Evaluating Sediment Depositional Patterns Using Be-7 in Upper Newport Estuary, California. in: V.P. Singh, Y.H. Xu (eds.), Coastal Hydrology and Processes pp. 369-382. Water Resources Publications. Lone Tree, CO.

Book Chapter20060547Sediment Quality

Stein, E.D., D. Ackerman. 2006. Dry weather water quality loadings in arid, urban watersheds of the Los Angeles Basin, California, USA. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 17-31. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.02

Yang, Z.Y., E.Y. Zeng, H. Xia, J. Wang, B. Mai, K.A. Maruya. 2006. Application of a static solid-phase microextraction procedure combined with liquid-liquid extraction to determine poly(dimethyl)siloxane-water partition coefficients for selected polychlorinated biphenyls. Journal of Chromatography 1116:240-247.

Journal Article20060487Sediment Quality

Ackerman, D., S.B. Weisberg. 2006. Evaluating HSPF runoff and water quality predictions at multiple time and spatial scales. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 293-303. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.22

Nezlin, N.P., P.M. DiGiacomo, E.D. Stein, D. Ackerman. 2006. Stormwater runoff plumes observed by SeaWiFS radiometer in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 87-105. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.07

Griffith, J.F., L.A. Aumand, I.M. Lee, C.D. McGEE, L.L. Othman, K.J. Ritter, K.O. Walker, S.B. Weisberg. 2006. Comparison and verification of bacterial water quality indicator measurement methods using ambient coastal water samples. Environmental Monitoring and Assessment 116:335-344.

Journal Article20060491Microbial Water Quality

Griffith, J.F., S.B. Weisberg. 2006. Evaluation of Rapid Microbiological Methods for Measuring Recreational Water Quality. Technical Report 485. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060485Microbial Water Quality

Stein, E.D., L.L. Tiefenthaler, K.C. Schiff. 2006. Watershed-based sources of polycyclic aromatic hydrocarbons in urban storm water. Environmental Toxicology and Chemistry 25:373-385.

Journal Article20060478Regional Monitoring, Runoff Water Quality, Sediment Quality, Stormwater BMPs

Stein, E.D., L.L. Tiefenthaler, K.C. Schiff. 2006. Watershed-based sources of polycyclic aromatic hydrocarbons in urban stormwater. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 33-50. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.03

Ritter, K.J., B.H. Jones, S.B. Weisberg, D.W. Diehl. 2006. A two-stage multivariate approach to identifying ocean outfall plumes based on temperature and salinity profiles. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 133-139. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.10

Schiff, K.C., J.S. Brown, D.W. Diehl. 2006. Extent and magnitude of copper contamination in marinas of the San Diego region, CA USA. Technical Report 483. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060483Regional Monitoring, Sediment Quality

Allen, M.J. 2006. Continental shelf and upper slope. in: L.G. Allen, D.J. Pondella, M.H. Horn (eds.), The Ecology of Marine Fishes: California and Adjacent Waters pp. 167-202. University of California Press. Berkeley, CA.

Book Chapter20060488Bioassessment, Sediment Quality

Allen, M.J. 2006. Pollution. in: L.G. Allen, D.J. Pondella, M.H. Horn (eds.), The Ecology of Marine Fishes: California and Adjacent Waters pp. 595-610. University of California Press. Berkeley, CA.

Book Chapter20060489Sediment Quality

Nezlin, N.P., S.B. Weisberg, D.W. Diehl. 2006. Relative availability of satellite imagery and ship-based sampling for assessment of stormwater runoff plumes in coastal southern California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 305-314. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.23

Zeidberg, L.D., W.M. Hamner, N.P. Nezlin, A. Henry. 2006. The fishery for California market squid (Loligo opalescens) (Cephalopoda: Myopsida), from 1981 through 2003. Fishery Bulletin 104:46-59.

Journal Article20060476Bioassessment

Zeidberg, L.D., W.M. Hamner, N.P. Nezlin, A. Henry. 2006. The fishery for California market squid, Loligo opalescens (Cephalopoda: Myopsida), from 1981-2003. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 247-261. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.19

Caldeira, R.M.A., P. Marchesiello, N.P. Nezlin, P.M. DiGiacomo, J.C. McWilliams. 2006. Island wakes in the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 227-246. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.18

Sabin, L.D., J.H. Lim, K.D. Stolzenbach, K.C. Schiff. 2006. Atmospheric dry deposition of trace metals in the coastal region of Los Angeles, California, USA. Environmental Toxicology and Chemistry 25:2334-2341.

Journal Article20060535Runoff Water Quality, Stormwater BMPs

Sabin, L.D., J.H. Lim, K.D. Stolzenbach, K.C. Schiff. 2006. Contribution of trace metals from atmospheric deposition to stormwater runoff in a small impervious urban catchment. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 67-76. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.05

Lyon, G.S., D. Petschauer, E.D. Stein. 2006. Effluent discharges to the Southern California Bight from large municipal wastewater treatment facilities in 2003 and 2004. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 1-15. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.01

Robinson, B.J., K.J. Ritter, R.D. Ellender. 2006. A statistical appraisal of disproportional versus proportional microbial source tracking libraries. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 327-332. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.25

Sutula, M., K. Kamer, J. Cable, H. Colis, W. Berelson, J. Mendez. 2006. Sediments as an internal source of nutrients to Upper Newport Bay, California. Technical Report 482. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060482Eutrophication, Harmful Algal Blooms

Nezlin, N.P., K. Kamer, E.D. Stein, A. Carr, J. Hyde. 2006. Relationship between dissolved oxygen and macroalgal distribution in Upper Newport Bay. Technical Report 494. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060494Eutrophication, Harmful Algal Blooms

Sutula, M., E.D. Stein, E. Inlander. 2006. Evaluation of a method to cost-effectively map riparian areas in southern California Coastal Watersheds. Technical Report 480. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060480Regional Monitoring

Noble, R.T., J.F. Griffith, A.D. Blackwood, J.A. Fuhrman, J.B. Gregory, X. Hernandez, X. Liang, A.A. Bera, K.C. Schiff. 2006. Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California. Applied and Environmental Microbiology 72:1604-1612.

Journal Article20060484Microbial Source Tracking, Microbial Water Quality

Noble, R.T., J.F. Griffith, A.D. Blackwood, J.A. Fuhrman, J.B. Gregory, X. Hernandez, X. Liang, A.A. Bera, K.C. Schiff. 2006. Multi-tiered approach using quantitative polymerase chain reaction for tracking sources of fecal pollution to Santa Monica Bay, California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 181-193. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.15

Vidal, D., S.M. Bay, D. Schlenk. 2006. Effects of dietary Selenomethionine on larval Rainbow Trout (Oncorhynchus mykiss). in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 173-179. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.14

Brown, J.S., S.M. Bay. 2006. Assessment of Best Management Practice (BMP) effectiveness for reducing toxicity in urban runoff. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 207-225. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.17

Lim, J.H., L.D. Sabin, K.C. Schiff, K.D. Stolzenbach. 2006. Concentration, size distribution, and dry deposition rate of particle-associated metals in the Los Angeles region. Atmospheric Environment 40:7810-7823.

Journal Article20060536Runoff Water Quality, Stormwater BMPs

Sabin, L.D., J.H. Lim, M.T. Venezia, A.M. Winer, K.C. Schiff, K.D. Stolzenbach. 2006. Dry deposition and resuspension of particle-associated metals near a freeway in Los Angeles. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 77-86. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.06

Sabin, L.D., J.H. Lim, M.T. Venezia, A.M. Winer, K.C. Schiff, K.D. Stolzenbach. 2006. Dry deposition and resuspension of particle-associated metals near a freeway in Los Angeles. Atmospheric Environment 40:7528-7538.

Journal Article20060537Runoff Water Quality, Stormwater BMPs

Weisberg, S.B., B. Thompson, J.A. Ranasinghe, D.E. Montagne, D.B. Cadien, D.M. Dauer, D. Diener, J. Oliver, D.J. Reish, R.G. Velarde, J.Q. Word. 2006. The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 165-171. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.13

Schiff, K.C., B. Bax, P. Markle, T. Fleming, J. Newman. 2006. Wet and dry weather toxicity in the San Gabriel River. Technical Report 493. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060493Runoff Water Quality, Stormwater BMPs

Sanders, B.F., F. Arega, M. Sutula. 2006. Modeling the dry-weather tidal cycling of fecal indicator bacteria in surface waters of an intertidal wetland. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 51-66. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.04

Dark, S., D.L. Bram, M. Quinones, L.D. Duong, J. Patananan, J. Dooley, M. Antos, F. Bashir, J. Mejia, M. Sutula, E. Blok. 2006. Wetland and riparian mapping within the rivers and mountains conservancy territory: a landscape profile. Technical Report 519. Southern California Coastal Water Research Project. Costa Mesa, CA.

Technical Report20060519

Greenstein, D.J., S.M. Bay, B. Anderson, G.T. Chandler, J.D. Farrar, C. Keppler, B. Phillips, A. Ringwood, D. Young. 2006. Comparison of methods for acute and chronic toxicity in marine sediments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 277-292. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.21

Schiff, K.C., J.S. Brown, D.W. Diehl, D.J. Greenstein. 2006. Extent and magnitude of copper contamination in marinas of the San Diego region, California. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 155-163. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.12

Stein, E.D., S. Zaleski. 2006. Managing runoff to protect natural streams: the latest developments on investigation and management of hydromodification in California. Technical Report 475. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060475Ecohydrology, Runoff Water Quality, Stormwater BMPs

Peng, J., E.Y. Zeng. 2006. An integrated geochemical and hydrodynamic model for tidal coastal environments. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 117-131. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.09

Collins, J.N., M. Sutula, E.D. Stein, M. Odaya, E. Zhang, K. Larned. 2006. Comparison of methods to map California riparian areas. Technical Report 502. San Francisco Estuary Institute. Oakland, CA.

Technical Report20060502

Ritter, K.J., M. Leecaster. 2006. Multi-lag cluster designs for estimating the semivariogram of sediment contaminants from effluent discharge offshore in San Diego. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 315-325. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.24

Griffith, J.F., K.C. Schiff, G.S. Lyon. 2006. Microbiological water quality at non-human impacted reference beaches in southern California during wet weather. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 195-206. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.16

Griffith, J.F., K.C. Schiff, G.S. Lyon. 2006. Microbiological water quality at non-human impacted reference beaches in southern California during wet weather. Technical Report 495. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060495Microbial Water Quality

Schiff, K.C., K.A. Maruya, K. Christenson. 2006. Southern California Bight 2003 Regional Monitoring Program: II. Sediment Chemistry. Technical Report 492. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060492Regional Monitoring, Sediment Quality, Southern California Bight Regional Monitoring Program

Sutula, M., E.D. Stein, J.N. Collins, A.E. Fetscher, R. Clark. 2006. A practical guide for the development of a wetland assessment method: the California experience. Journal of the American Water Resources Association 42:157-175.

Journal Article20060481Regional Monitoring

Zeng, E.Y., D. Tsukada, D.W. Diehl, J. Peng, K.C. Schiff, J.A. Noblett, K.A. Maruya. 2006. Distribution and mass inventory of total dichlorodiphenyldichloroethylene in the water column of the Southern California Bight. in: S.B. Weisberg, K. Miller (eds.), Southern California Coastal Water Research Project 2005-06 Biennial Report pp. 107-116. Southern California Coastal Water Research Project. Westminster, CA.

Annual Report20062006.08

Scientific Planning and Review Committee. 2006. Review of California's Surface Water Ambient Monitoring Program (SWAMP). Technical Report 486. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20060486Regional Monitoring

NOAA National Centers for Coastal Ocean Science (NCCOS). 2005. A Biogeographic Assessment of the Channel Islands National Marine Sanctuary: A Review of Boundary Expansion Concepts for NOAA's National Marine Sanctuary Program. Technical Report 490. NCCOS's Biogeography Team in cooperation with the National Marine Sanctuary Program. Silver Spring, MD.

Technical Report20050490Regional Monitoring

Ackerman, D., K.C. Schiff, S.B. Weisberg. 2005. Evaluating HSPF in an arid, urbanized watershed. Journal of the American Water Resources Association 41:477-486.

Journal Article20050452Runoff Water Quality, Stormwater BMPs

Nezlin, N.P., P.M. DiGiacomo, E.D. Stein, D. Ackerman. 2005. Stormwater runoff plumes observed by SeaWiFS radiometer in the Southern California Bight. Remote Sensing of Environment 98:494-510.

Journal Article20050463Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Ranasinghe, J.A., T.K. Mikel, R.G. Velarde, S.B. Weisberg, D.E. Montagne, D.B. Cadien, A. Dalkey. 2005. The prevalence of non-indigenous species in southern California embayments and their effects on benthic macroinvertebrate communities. Biological Invasion 7:679-686.

Journal Article20050466Bioassessment, Sediment Quality

Colford Jr, J.M., T.J. Wade, K.C. Schiff, C. Wright, J.F. Griffith, S.K. Sandhu, S.B. Weisberg. 2005. Recreational water contact and illness in Mission Bay, California. Technical Report 449. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050449Microbial Risk Assessment, Microbial Water Quality, Runoff Water Quality

Ackerman, D., E.D. Stein, K.C. Schiff. 2005. Dry-season water quality in the San Gabriel River watershed. Bulletin of the Southern California Academy of Sciences 104:125-145.

Journal Article20050477Runoff Water Quality, Stormwater BMPs

Colford Jr, J.M., T.J. Wade, K.C. Schiff, C. Wright, J.F. Griffith, S.K. Sandhu, S.B. Weisberg. 2005. Recreational water contact and illness in Mission Bay, California (Appendices 1-3). Technical Report 449.1-3. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050449.1-3Microbial Risk Assessment, Microbial Water Quality

Colford Jr, J.M., T.J. Wade, K.C. Schiff, C. Wright, J.F. Griffith, S.K. Sandhu, S.B. Weisberg. 2005. Recreational water contact and illness in Mission Bay, California (Appendices 4-7). Technical Report 449.4-7. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050449.4-7Microbial Risk Assessment, Microbial Water Quality

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams. Technical Report 450. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450Ecohydrology, Runoff Water Quality, Southern California Stormwater Monitoring Coalition, Stormwater BMPs

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Borrego Canyon& Serrano Creek Map). Technical Report 450.A4. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A4Ecohydrology

Nezlin, N.P., P.M. Digiacomo. 2005. Satellite ocean color observations of stormwater runoff plumes along the San Pedro Shelf (southern California) during 1997-2003. Continental Shelf Research 25:1692-1711.

Journal Article20050460Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Caldeira, R.M.A., P. Marchesiello, N.P. Nezlin, P.M. DiGiacomo, J.C. McWilliams. 2005. Island wakes in the Southern California Bight. Journal of Geophysical Research 110:C11012.

Journal Article20050470

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Dry Canyon Map). Technical Report 450.A6. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A6Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Hasley Canyon Map). Technical Report 450.A2. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A2Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Hicks Canyon Wash Map). Technical Report 450.A7. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A7Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Plum Canyon Map). Technical Report 450.A3. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A3Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Santiago Creek Map). Technical Report 450.A5. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A5Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A - Topanga Creek Map). Technical Report 450.A1. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.A1Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix A). Technical Report 450.A. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.AEcohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix B1). Technical Report 450.B1. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.B1Ecohydrology

Sabin, L.D., J.H. Lim, K.D. Stolzenbach, K.C. Schiff. 2005. Contribution of trace metals from atmospheric deposition to stormwater runoff in a small impervious urban catchment. Water Research 39:3929-3937.

Journal Article20050462Regional Monitoring, Runoff Water Quality, Stormwater BMPs

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix B2). Technical Report 450.B2. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.B2Ecohydrology

Coleman, D., C. MacRae, E.D. Stein. 2005. Effect of increases in peak flows and imperviousness on the morphology of southern California streams (Appendix C). Technical Report 450.C. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050450.CEcohydrology

Noble, R.T., S.B. Weisberg. 2005. A review of technologies for rapid detection of bacteria in recreational waters. Journal of Water and Health 3.4:381-392.

Journal Article20050479Microbial Water Quality

Nezlin, N.P., E.D. Stein. 2005. Spatial and temporal patterns of remotely-sensed and field-measured rainfall in southern California. Remote Sensing of Environment 96:228-245.

Journal Article20050455Runoff Water Quality, Stormwater BMPs

Noble, R.T., J.F. Griffith, A.D. Blackwood, J.A. Fuhrman, J.B. Gregory, X. Hernandez, X. Liang, A.A. Bera, K.C. Schiff. 2005. Multi-tiered approach using quantitative polymerase chain reaction for tracking sources of fecal pollution to Santa Monica Bay, California. Technical Report 446. Southern California Coastal Water Research Project. Westminster, CA.

Technical Report20050446Microbial Source Tracking, Microbial Water Quality

Vidal, D., S.M. Bay, D. Schlenk. 2005. Effects of dietary selenomethionine on larval Rainbow Trout (Oncorhynchus mykiss). Environmental Contamination and Toxicology 49:71-75.

Journal Article20050456Emerging Contaminants

Vidal, D.E., S.M. Bay. 2005. Comparative sediment quality guideline performance for predicting sediment toxicity in southern California, USA. Environmental Toxicology and Chemistry 24:3173-3182.

Journal Article20050472Sediment Quality

Brown, J.S., S.M. Bay. 2005.